data_1EJ1 # _model_server_result.job_id cWEPg1eCoz-gY0JtQc8PWA _model_server_result.datetime_utc '2024-11-17 01:58:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ej1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 1EJ1 # _exptl.entry_id 1EJ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 458.235 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1EJ1 _cell.length_a 69.6 _cell.length_b 75.4 _cell.length_c 76.6 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EJ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C11 H18 N5 O11 P2 1' _chem_comp.formula_weight 458.235 _chem_comp.id M7G _chem_comp.mon_nstd_flag . _chem_comp.name "7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A M7G doub 218 n n PA O2A M7G sing 219 n n PA O3A M7G sing 220 n n PA O5' M7G sing 221 n n O2A HOA2 M7G sing 222 n n O3A PB M7G sing 223 n n O5' C5' M7G sing 224 n n PB O1B M7G doub 225 n n PB O2B M7G sing 226 n n PB O3B M7G sing 227 n n O2B HOB2 M7G sing 228 n n O3B HOB3 M7G sing 229 n n C5' C4' M7G sing 230 n n C5' "H5'1" M7G sing 231 n n C5' "H5'2" M7G sing 232 n n C4' O4' M7G sing 233 n n C4' C3' M7G sing 234 n n C4' H4' M7G sing 235 n n O4' C1' M7G sing 236 n n C3' O3' M7G sing 237 n n C3' C2' M7G sing 238 n n C3' H3' M7G sing 239 n n O3' HO3' M7G sing 240 n n C2' O2' M7G sing 241 n n C2' C1' M7G sing 242 n n C2' H2' M7G sing 243 n n O2' HO2' M7G sing 244 n n C1' N9 M7G sing 245 n n C1' H1' M7G sing 246 n n N9 C8 M7G sing 247 n y N9 C4 M7G sing 248 n y C8 N7 M7G doub 249 n y C8 H81 M7G sing 250 n n N7 CM7 M7G sing 251 n n N7 C5 M7G sing 252 n y CM7 HM71 M7G sing 253 n n CM7 HM72 M7G sing 254 n n CM7 HM73 M7G sing 255 n n C5 C6 M7G sing 256 n n C5 C4 M7G doub 257 n y C6 O6 M7G doub 258 n n C6 N1 M7G sing 259 n n N1 C2 M7G sing 260 n n N1 HN1 M7G sing 261 n n C2 N2 M7G sing 262 n n C2 N3 M7G doub 263 n n N2 HN21 M7G sing 264 n n N2 HN22 M7G sing 265 n n N3 C4 M7G sing 266 n n # _atom_sites.entry_id 1EJ1 _atom_sites.fract_transf_matrix[1][1] 0.014368 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013263 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013055 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 M7G A 1 1000 1000 M7G M7G . D 2 M7G B 1 1001 1001 M7G M7G . E 3 HOH A 1 1001 166 HOH HOH . E 3 HOH A 2 1002 206 HOH HOH . E 3 HOH A 3 1003 174 HOH HOH . E 3 HOH A 4 1004 186 HOH HOH . E 3 HOH A 5 1005 8 HOH HOH . E 3 HOH A 6 1006 35 HOH HOH . E 3 HOH A 7 1007 179 HOH HOH . E 3 HOH A 8 1008 187 HOH HOH . E 3 HOH A 9 1009 7 HOH HOH . E 3 HOH A 10 1010 11 HOH HOH . E 3 HOH A 11 1011 21 HOH HOH . E 3 HOH A 12 1012 25 HOH HOH . E 3 HOH A 13 1013 31 HOH HOH . E 3 HOH A 14 1014 34 HOH HOH . E 3 HOH A 15 1015 37 HOH HOH . E 3 HOH A 16 1016 39 HOH HOH . E 3 HOH A 17 1017 42 HOH HOH . E 3 HOH A 18 1018 43 HOH HOH . E 3 HOH A 19 1019 45 HOH HOH . E 3 HOH A 20 1020 48 HOH HOH . E 3 HOH A 21 1021 50 HOH HOH . E 3 HOH A 22 1022 51 HOH HOH . E 3 HOH A 23 1023 52 HOH HOH . E 3 HOH A 24 1024 58 HOH HOH . E 3 HOH A 25 1025 60 HOH HOH . E 3 HOH A 26 1026 61 HOH HOH . E 3 HOH A 27 1027 62 HOH HOH . E 3 HOH A 28 1028 64 HOH HOH . E 3 HOH A 29 1029 68 HOH HOH . E 3 HOH A 30 1030 71 HOH HOH . E 3 HOH A 31 1031 76 HOH HOH . E 3 HOH A 32 1032 78 HOH HOH . E 3 HOH A 33 1033 80 HOH HOH . E 3 HOH A 34 1034 82 HOH HOH . E 3 HOH A 35 1035 89 HOH HOH . E 3 HOH A 36 1036 91 HOH HOH . E 3 HOH A 37 1037 93 HOH HOH . E 3 HOH A 38 1038 96 HOH HOH . E 3 HOH A 39 1039 99 HOH HOH . E 3 HOH A 40 1040 101 HOH HOH . E 3 HOH A 41 1041 103 HOH HOH . E 3 HOH A 42 1042 105 HOH HOH . E 3 HOH A 43 1043 110 HOH HOH . E 3 HOH A 44 1044 111 HOH HOH . E 3 HOH A 45 1045 112 HOH HOH . E 3 HOH A 46 1046 113 HOH HOH . E 3 HOH A 47 1047 114 HOH HOH . E 3 HOH A 48 1048 120 HOH HOH . E 3 HOH A 49 1049 123 HOH HOH . E 3 HOH A 50 1050 126 HOH HOH . E 3 HOH A 51 1051 129 HOH HOH . E 3 HOH A 52 1052 130 HOH HOH . E 3 HOH A 53 1053 133 HOH HOH . E 3 HOH A 54 1054 225 HOH HOH . E 3 HOH A 55 1055 226 HOH HOH . E 3 HOH A 56 1056 227 HOH HOH . E 3 HOH A 57 1057 230 HOH HOH . E 3 HOH A 58 1058 232 HOH HOH . E 3 HOH A 59 1059 233 HOH HOH . E 3 HOH A 60 1060 234 HOH HOH . E 3 HOH A 61 1061 237 HOH HOH . E 3 HOH A 62 1062 238 HOH HOH . E 3 HOH A 63 1063 241 HOH HOH . E 3 HOH A 64 1064 242 HOH HOH . E 3 HOH A 65 1065 243 HOH HOH . E 3 HOH A 66 1066 246 HOH HOH . E 3 HOH A 67 1067 247 HOH HOH . E 3 HOH A 68 1068 248 HOH HOH . E 3 HOH A 69 1069 249 HOH HOH . E 3 HOH A 70 1070 251 HOH HOH . E 3 HOH A 71 1071 253 HOH HOH . E 3 HOH A 72 1072 254 HOH HOH . E 3 HOH A 73 1073 256 HOH HOH . E 3 HOH A 74 1074 257 HOH HOH . E 3 HOH A 75 1075 258 HOH HOH . E 3 HOH A 76 1076 259 HOH HOH . E 3 HOH A 77 1077 260 HOH HOH . E 3 HOH A 78 1078 262 HOH HOH . E 3 HOH A 79 1079 263 HOH HOH . F 3 HOH B 1 1002 124 HOH HOH . F 3 HOH B 2 1003 195 HOH HOH . F 3 HOH B 3 1004 169 HOH HOH . F 3 HOH B 4 1005 184 HOH HOH . F 3 HOH B 5 1006 161 HOH HOH . F 3 HOH B 6 1007 9 HOH HOH . F 3 HOH B 7 1008 10 HOH HOH . F 3 HOH B 8 1009 12 HOH HOH . F 3 HOH B 9 1010 22 HOH HOH . F 3 HOH B 10 1011 23 HOH HOH . F 3 HOH B 11 1012 26 HOH HOH . F 3 HOH B 12 1013 32 HOH HOH . F 3 HOH B 13 1014 33 HOH HOH . F 3 HOH B 14 1015 36 HOH HOH . F 3 HOH B 15 1016 55 HOH HOH . F 3 HOH B 16 1017 56 HOH HOH . F 3 HOH B 17 1018 59 HOH HOH . F 3 HOH B 18 1019 63 HOH HOH . F 3 HOH B 19 1020 67 HOH HOH . F 3 HOH B 20 1021 69 HOH HOH . F 3 HOH B 21 1022 74 HOH HOH . F 3 HOH B 22 1023 75 HOH HOH . F 3 HOH B 23 1024 85 HOH HOH . F 3 HOH B 24 1025 86 HOH HOH . F 3 HOH B 25 1026 90 HOH HOH . F 3 HOH B 26 1027 94 HOH HOH . F 3 HOH B 27 1028 95 HOH HOH . F 3 HOH B 28 1029 98 HOH HOH . F 3 HOH B 29 1030 100 HOH HOH . F 3 HOH B 30 1031 102 HOH HOH . F 3 HOH B 31 1032 104 HOH HOH . F 3 HOH B 32 1033 106 HOH HOH . F 3 HOH B 33 1034 107 HOH HOH . F 3 HOH B 34 1035 109 HOH HOH . F 3 HOH B 35 1036 115 HOH HOH . F 3 HOH B 36 1037 122 HOH HOH . F 3 HOH B 37 1038 125 HOH HOH . F 3 HOH B 38 1039 127 HOH HOH . F 3 HOH B 39 1040 228 HOH HOH . F 3 HOH B 40 1041 229 HOH HOH . F 3 HOH B 41 1042 231 HOH HOH . F 3 HOH B 42 1043 235 HOH HOH . F 3 HOH B 43 1044 236 HOH HOH . F 3 HOH B 44 1045 239 HOH HOH . F 3 HOH B 45 1046 240 HOH HOH . F 3 HOH B 46 1047 244 HOH HOH . F 3 HOH B 47 1048 245 HOH HOH . F 3 HOH B 48 1049 250 HOH HOH . F 3 HOH B 49 1050 252 HOH HOH . F 3 HOH B 50 1051 255 HOH HOH . F 3 HOH B 51 1052 261 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA M7G . . . D 2 52.477 11.852 16.201 1 25.33 ? PA M7G 1001 B 1 HETATM 2 O O1A M7G . . . D 2 51.776 12.464 17.361 1 25.29 ? O1A M7G 1001 B 1 HETATM 3 O O2A M7G . . . D 2 52.211 10.405 16.185 1 25.17 ? O2A M7G 1001 B 1 HETATM 4 O O3A M7G . . . D 2 51.947 12.494 14.836 1 25.66 ? O3A M7G 1001 B 1 HETATM 5 O O5' M7G . . . D 2 54.075 12.082 16.306 1 25.46 ? O5' M7G 1001 B 1 HETATM 6 P PB M7G . . . D 2 52.4 13.956 14.44 1 24.7 ? PB M7G 1001 B 1 HETATM 7 O O1B M7G . . . D 2 52.136 14.842 15.576 1 25.53 ? O1B M7G 1001 B 1 HETATM 8 O O2B M7G . . . D 2 51.579 14.402 13.309 1 26.61 ? O2B M7G 1001 B 1 HETATM 9 O O3B M7G . . . D 2 53.841 13.957 14.066 1 25.4 ? O3B M7G 1001 B 1 HETATM 10 C C5' M7G . . . D 2 54.587 13.118 17.1 1 23.51 ? C5' M7G 1001 B 1 HETATM 11 C C4' M7G . . . D 2 55.791 12.801 17.902 1 23.46 ? C4' M7G 1001 B 1 HETATM 12 O O4' M7G . . . D 2 55.35 12.061 19.027 1 22.94 ? O4' M7G 1001 B 1 HETATM 13 C C3' M7G . . . D 2 56.803 11.866 17.332 1 23.91 ? C3' M7G 1001 B 1 HETATM 14 O O3' M7G . . . D 2 57.751 12.581 16.497 1 27.3 ? O3' M7G 1001 B 1 HETATM 15 C C2' M7G . . . D 2 57.58 11.448 18.612 1 22.56 ? C2' M7G 1001 B 1 HETATM 16 O O2' M7G . . . D 2 58.484 12.533 19.079 1 23.57 ? O2' M7G 1001 B 1 HETATM 17 C C1' M7G . . . D 2 56.407 11.236 19.53 1 19.74 ? C1' M7G 1001 B 1 HETATM 18 N N9 M7G . . . D 2 55.69 9.966 19.532 1 16.77 ? N9 M7G 1001 B 1 HETATM 19 C C8 M7G . . . D 2 54.594 9.524 18.904 1 15.09 ? C8 M7G 1001 B 1 HETATM 20 N N7 M7G . . . D 2 54.387 8.287 19.28 1 14.67 ? N7 M7G 1001 B 1 HETATM 21 C CM7 M7G . . . D 2 53.294 7.423 18.834 1 13.3 ? CM7 M7G 1001 B 1 HETATM 22 C C5 M7G . . . D 2 55.419 7.823 20.268 1 13.65 ? C5 M7G 1001 B 1 HETATM 23 C C6 M7G . . . D 2 55.659 6.773 20.913 1 12.96 ? C6 M7G 1001 B 1 HETATM 24 O O6 M7G . . . D 2 54.936 5.729 20.856 1 12.24 ? O6 M7G 1001 B 1 HETATM 25 N N1 M7G . . . D 2 56.806 6.905 21.693 1 12.45 ? N1 M7G 1001 B 1 HETATM 26 C C2 M7G . . . D 2 57.589 8.011 21.782 1 11.67 ? C2 M7G 1001 B 1 HETATM 27 N N2 M7G . . . D 2 58.629 7.966 22.57 1 11.84 ? N2 M7G 1001 B 1 HETATM 28 N N3 M7G . . . D 2 57.329 9.135 21.111 1 13.06 ? N3 M7G 1001 B 1 HETATM 29 C C4 M7G . . . D 2 56.205 9.007 20.329 1 14.1 ? C4 M7G 1001 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #