data_1EJ4
#
_model_server_result.job_id            PJp_bYGEN8FNMHoeAnsCEg 
_model_server_result.datetime_utc      '2024-11-05 04:57:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ej4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1000}' 
#
_entry.id    1EJ4 
#
_exptl.entry_id    1EJ4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              458.235 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.8 
_cell.angle_gamma         90 
_cell.entry_id            1EJ4 
_cell.length_a            81.9 
_cell.length_b            45.2 
_cell.length_c            62.1 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1EJ4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C11 H18 N5 O11 P2 1' 
_chem_comp.formula_weight    458.235 
_chem_comp.id                M7G 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A M7G doub 218 n n 
PA O2A M7G sing 219 n n 
PA O3A M7G sing 220 n n 
PA O5' M7G sing 221 n n 
O2A HOA2 M7G sing 222 n n 
O3A PB M7G sing 223 n n 
O5' C5' M7G sing 224 n n 
PB O1B M7G doub 225 n n 
PB O2B M7G sing 226 n n 
PB O3B M7G sing 227 n n 
O2B HOB2 M7G sing 228 n n 
O3B HOB3 M7G sing 229 n n 
C5' C4' M7G sing 230 n n 
C5' "H5'1" M7G sing 231 n n 
C5' "H5'2" M7G sing 232 n n 
C4' O4' M7G sing 233 n n 
C4' C3' M7G sing 234 n n 
C4' H4' M7G sing 235 n n 
O4' C1' M7G sing 236 n n 
C3' O3' M7G sing 237 n n 
C3' C2' M7G sing 238 n n 
C3' H3' M7G sing 239 n n 
O3' HO3' M7G sing 240 n n 
C2' O2' M7G sing 241 n n 
C2' C1' M7G sing 242 n n 
C2' H2' M7G sing 243 n n 
O2' HO2' M7G sing 244 n n 
C1' N9 M7G sing 245 n n 
C1' H1' M7G sing 246 n n 
N9 C8 M7G sing 247 n y 
N9 C4 M7G sing 248 n y 
C8 N7 M7G doub 249 n y 
C8 H81 M7G sing 250 n n 
N7 CM7 M7G sing 251 n n 
N7 C5 M7G sing 252 n y 
CM7 HM71 M7G sing 253 n n 
CM7 HM72 M7G sing 254 n n 
CM7 HM73 M7G sing 255 n n 
C5 C6 M7G sing 256 n n 
C5 C4 M7G doub 257 n y 
C6 O6 M7G doub 258 n n 
C6 N1 M7G sing 259 n n 
N1 C2 M7G sing 260 n n 
N1 HN1 M7G sing 261 n n 
C2 N2 M7G sing 262 n n 
C2 N3 M7G doub 263 n n 
N2 HN21 M7G sing 264 n n 
N2 HN22 M7G sing 265 n n 
N3 C4 M7G sing 266 n n 
#
_atom_sites.entry_id                     1EJ4 
_atom_sites.fract_transf_matrix[1][1]    0.01221 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002551 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022124 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016451 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 M7G A 1 1000 1000 M7G M7G . 
D 4 HOH A 1 1001 1 HOH TIP . 
D 4 HOH A 2 1002 2 HOH TIP . 
D 4 HOH A 3 1003 3 HOH TIP . 
D 4 HOH A 4 1004 4 HOH TIP . 
D 4 HOH A 5 1005 6 HOH TIP . 
D 4 HOH A 6 1006 7 HOH TIP . 
D 4 HOH A 7 1007 8 HOH TIP . 
D 4 HOH A 8 1008 9 HOH TIP . 
D 4 HOH A 9 1009 10 HOH TIP . 
D 4 HOH A 10 1010 11 HOH TIP . 
D 4 HOH A 11 1011 12 HOH TIP . 
D 4 HOH A 12 1012 13 HOH TIP . 
D 4 HOH A 13 1013 14 HOH TIP . 
D 4 HOH A 14 1014 16 HOH TIP . 
D 4 HOH A 15 1015 17 HOH TIP . 
D 4 HOH A 16 1016 19 HOH TIP . 
D 4 HOH A 17 1017 21 HOH TIP . 
D 4 HOH A 18 1018 22 HOH TIP . 
D 4 HOH A 19 1019 23 HOH TIP . 
D 4 HOH A 20 1020 25 HOH TIP . 
D 4 HOH A 21 1021 26 HOH TIP . 
D 4 HOH A 22 1022 27 HOH TIP . 
D 4 HOH A 23 1023 28 HOH TIP . 
D 4 HOH A 24 1024 30 HOH TIP . 
D 4 HOH A 25 1025 31 HOH TIP . 
D 4 HOH A 26 1026 32 HOH TIP . 
D 4 HOH A 27 1027 33 HOH TIP . 
D 4 HOH A 28 1028 34 HOH TIP . 
D 4 HOH A 29 1029 35 HOH TIP . 
D 4 HOH A 30 1030 36 HOH TIP . 
D 4 HOH A 31 1031 37 HOH TIP . 
D 4 HOH A 32 1032 38 HOH TIP . 
D 4 HOH A 33 1033 45 HOH TIP . 
D 4 HOH A 34 1034 46 HOH TIP . 
D 4 HOH A 35 1035 47 HOH TIP . 
D 4 HOH A 36 1036 48 HOH TIP . 
D 4 HOH A 37 1037 50 HOH TIP . 
D 4 HOH A 38 1038 53 HOH TIP . 
D 4 HOH A 39 1039 54 HOH TIP . 
D 4 HOH A 40 1040 55 HOH TIP . 
D 4 HOH A 41 1041 56 HOH TIP . 
D 4 HOH A 42 1042 57 HOH TIP . 
D 4 HOH A 43 1043 58 HOH TIP . 
D 4 HOH A 44 1044 59 HOH TIP . 
D 4 HOH A 45 1045 60 HOH TIP . 
D 4 HOH A 46 1046 61 HOH TIP . 
D 4 HOH A 47 1047 62 HOH TIP . 
D 4 HOH A 48 1048 64 HOH TIP . 
D 4 HOH A 49 1049 65 HOH TIP . 
D 4 HOH A 50 1050 66 HOH TIP . 
D 4 HOH A 51 1051 68 HOH TIP . 
D 4 HOH A 52 1052 69 HOH TIP . 
D 4 HOH A 53 1053 70 HOH TIP . 
D 4 HOH A 54 1054 73 HOH TIP . 
D 4 HOH A 55 1055 74 HOH TIP . 
D 4 HOH A 56 1056 76 HOH TIP . 
D 4 HOH A 57 1057 77 HOH TIP . 
D 4 HOH A 58 1058 78 HOH TIP . 
D 4 HOH A 59 1059 79 HOH TIP . 
D 4 HOH A 60 1060 80 HOH TIP . 
D 4 HOH A 61 1061 81 HOH TIP . 
D 4 HOH A 62 1062 82 HOH TIP . 
D 4 HOH A 63 1063 83 HOH TIP . 
D 4 HOH A 64 1064 84 HOH TIP . 
D 4 HOH A 65 1065 85 HOH TIP . 
D 4 HOH A 66 1066 86 HOH TIP . 
D 4 HOH A 67 1067 87 HOH TIP . 
D 4 HOH A 68 1068 88 HOH TIP . 
D 4 HOH A 69 1069 89 HOH TIP . 
D 4 HOH A 70 1070 90 HOH TIP . 
D 4 HOH A 71 1071 93 HOH TIP . 
D 4 HOH A 72 1072 94 HOH TIP . 
E 4 HOH B 1 65 5 HOH TIP . 
E 4 HOH B 2 66 18 HOH TIP . 
E 4 HOH B 3 67 20 HOH TIP . 
E 4 HOH B 4 68 39 HOH TIP . 
E 4 HOH B 5 69 40 HOH TIP . 
E 4 HOH B 6 70 41 HOH TIP . 
E 4 HOH B 7 71 43 HOH TIP . 
E 4 HOH B 8 72 44 HOH TIP . 
E 4 HOH B 9 73 49 HOH TIP . 
E 4 HOH B 10 74 52 HOH TIP . 
E 4 HOH B 11 75 63 HOH TIP . 
E 4 HOH B 12 76 72 HOH TIP . 
E 4 HOH B 13 77 92 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA M7G . . . C 3 4.439 -7.584 21.896 1 37.6 ? PA M7G 1000 A 1 
HETATM 2 O O1A M7G . . . C 3 4.742 -8.549 20.81 1 38 ? O1A M7G 1000 A 1 
HETATM 3 O O2A M7G . . . C 3 5.482 -6.527 21.881 1 36.18 ? O2A M7G 1000 A 1 
HETATM 4 O O3A M7G . . . C 3 2.992 -6.896 21.654 1 39.31 ? O3A M7G 1000 A 1 
HETATM 5 O O5' M7G . . . C 3 4.431 -8.338 23.329 1 34.25 ? O5' M7G 1000 A 1 
HETATM 6 P PB M7G . . . C 3 1.619 -7.646 22.001 1 42.26 ? PB M7G 1000 A 1 
HETATM 7 O O1B M7G . . . C 3 1.586 -8.958 21.297 1 39.64 ? O1B M7G 1000 A 1 
HETATM 8 O O2B M7G . . . C 3 0.5 -6.797 21.544 1 40.79 ? O2B M7G 1000 A 1 
HETATM 9 O O3B M7G . . . C 3 1.526 -7.837 23.479 1 40.98 ? O3B M7G 1000 A 1 
HETATM 10 C C5' M7G . . . C 3 4.27 -9.742 23.444 1 31.43 ? C5' M7G 1000 A 1 
HETATM 11 C C4' M7G . . . C 3 5.109 -10.378 24.49 1 27.94 ? C4' M7G 1000 A 1 
HETATM 12 O O4' M7G . . . C 3 6.349 -10.674 23.841 1 27.47 ? O4' M7G 1000 A 1 
HETATM 13 C C3' M7G . . . C 3 5.607 -9.487 25.59 1 25.75 ? C3' M7G 1000 A 1 
HETATM 14 O O3' M7G . . . C 3 4.664 -9.392 26.669 1 25.53 ? O3' M7G 1000 A 1 
HETATM 15 C C2' M7G . . . C 3 6.835 -10.279 26.104 1 24.78 ? C2' M7G 1000 A 1 
HETATM 16 O O2' M7G . . . C 3 6.423 -11.494 26.848 1 23.38 ? O2' M7G 1000 A 1 
HETATM 17 C C1' M7G . . . C 3 7.459 -10.616 24.76 1 23.27 ? C1' M7G 1000 A 1 
HETATM 18 N N9 M7G . . . C 3 8.284 -9.601 24.062 1 21.63 ? N9 M7G 1000 A 1 
HETATM 19 C C8 M7G . . . C 3 8.02 -8.653 23.117 1 19.85 ? C8 M7G 1000 A 1 
HETATM 20 N N7 M7G . . . C 3 9.121 -8.005 22.844 1 20.46 ? N7 M7G 1000 A 1 
HETATM 21 C CM7 M7G . . . C 3 9.229 -6.912 21.877 1 19.36 ? CM7 M7G 1000 A 1 
HETATM 22 C C5 M7G . . . C 3 10.302 -8.523 23.666 1 19.6 ? C5 M7G 1000 A 1 
HETATM 23 C C6 M7G . . . C 3 11.568 -8.272 23.813 1 20.28 ? C6 M7G 1000 A 1 
HETATM 24 O O6 M7G . . . C 3 12.192 -7.367 23.187 1 20.04 ? O6 M7G 1000 A 1 
HETATM 25 N N1 M7G . . . C 3 12.19 -9.125 24.764 1 21.14 ? N1 M7G 1000 A 1 
HETATM 26 C C2 M7G . . . C 3 11.571 -10.123 25.482 1 21.86 ? C2 M7G 1000 A 1 
HETATM 27 N N2 M7G . . . C 3 12.29 -10.823 26.323 1 21.65 ? N2 M7G 1000 A 1 
HETATM 28 N N3 M7G . . . C 3 10.248 -10.39 25.342 1 20.87 ? N3 M7G 1000 A 1 
HETATM 29 C C4 M7G . . . C 3 9.61 -9.56 24.405 1 20.37 ? C4 M7G 1000 A 1 
#
_model_server_stats.io_time_ms              48 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           29 
#