data_1EJE
#
_model_server_result.job_id            -9oFPztkArk_ln-0DwPNZA 
_model_server_result.datetime_utc      '2024-10-24 04:21:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1eje 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    1EJE 
#
_exptl.entry_id    1EJE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1EJE 
_cell.length_a            94.65 
_cell.length_b            94.65 
_cell.length_c            45.4 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1EJE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 45.4 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 1 A GLY 1 6_455 C NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? 
metalc ? metalc2 A N GLY 1 A GLY 1 6_455 C NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
metalc ? metalc3 A NE2 HIS 6 A HIS 6 6_455 C NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc4 A OD1 ASN 42 A ASN 42 1_555 B NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc5 A ND1 HIS 68 A HIS 68 1_555 B NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc6 A ND1 HIS 77 A HIS 77 1_555 C NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
metalc ? metalc7 A OE1 GLU 105 A GLU 105 1_555 B NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? 
metalc ? metalc8 B NI NI . A NI 201 1_555 E O3P FMN . A FMN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc9 B NI NI . A NI 201 1_555 F O HOH . A HOH 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc10 B NI NI . A NI 201 1_555 F O HOH . A HOH 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc11 C NI NI . A NI 202 1_555 F O HOH . A HOH 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1EJE 
_atom_sites.fract_transf_matrix[1][1]    0.010565 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010565 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022026 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NI A 1 201 201 NI NI . 
C 2 NI A 1 202 202 NI NI . 
D 3 SO4 A 1 301 301 SO4 SO4 . 
E 4 FMN A 1 401 401 FMN FMN . 
F 5 HOH A 1 1001 1001 HOH HOH . 
F 5 HOH A 2 1002 1002 HOH HOH . 
F 5 HOH A 3 1003 1003 HOH HOH . 
F 5 HOH A 4 1004 1004 HOH HOH . 
F 5 HOH A 5 1005 1005 HOH HOH . 
F 5 HOH A 6 1006 1006 HOH HOH . 
F 5 HOH A 7 1007 1007 HOH HOH . 
F 5 HOH A 8 1008 1008 HOH HOH . 
F 5 HOH A 9 1009 1009 HOH HOH . 
F 5 HOH A 10 1010 1010 HOH HOH . 
F 5 HOH A 11 1011 1011 HOH HOH . 
F 5 HOH A 12 1012 1012 HOH HOH . 
F 5 HOH A 13 1013 1013 HOH HOH . 
F 5 HOH A 14 1014 1014 HOH HOH . 
F 5 HOH A 15 1015 1015 HOH HOH . 
F 5 HOH A 16 1016 1016 HOH HOH . 
F 5 HOH A 17 1017 1017 HOH HOH . 
F 5 HOH A 18 1018 1018 HOH HOH . 
F 5 HOH A 19 1019 1019 HOH HOH . 
F 5 HOH A 20 1020 1020 HOH HOH . 
F 5 HOH A 21 1021 1021 HOH HOH . 
F 5 HOH A 22 1022 1022 HOH HOH . 
F 5 HOH A 23 1023 1023 HOH HOH . 
F 5 HOH A 24 1024 1024 HOH HOH . 
F 5 HOH A 25 1025 1025 HOH HOH . 
F 5 HOH A 26 1026 1026 HOH HOH . 
F 5 HOH A 27 1027 1027 HOH HOH . 
F 5 HOH A 28 1028 1028 HOH HOH . 
F 5 HOH A 29 1029 1029 HOH HOH . 
F 5 HOH A 30 1030 1030 HOH HOH . 
F 5 HOH A 31 1031 1031 HOH HOH . 
F 5 HOH A 32 1032 1032 HOH HOH . 
F 5 HOH A 33 1033 1033 HOH HOH . 
F 5 HOH A 34 1034 1034 HOH HOH . 
F 5 HOH A 35 1035 1035 HOH HOH . 
F 5 HOH A 36 1036 1036 HOH HOH . 
F 5 HOH A 37 1037 1037 HOH HOH . 
F 5 HOH A 38 1038 1038 HOH HOH . 
F 5 HOH A 39 1039 1039 HOH HOH . 
F 5 HOH A 40 1040 1040 HOH HOH . 
F 5 HOH A 41 1041 1041 HOH HOH . 
F 5 HOH A 42 1043 1043 HOH HOH . 
F 5 HOH A 43 1044 1044 HOH HOH . 
F 5 HOH A 44 1045 1045 HOH HOH . 
F 5 HOH A 45 1046 1046 HOH HOH . 
F 5 HOH A 46 1047 1047 HOH HOH . 
F 5 HOH A 47 1048 1048 HOH HOH . 
F 5 HOH A 48 1049 1049 HOH HOH . 
F 5 HOH A 49 1050 1050 HOH HOH . 
F 5 HOH A 50 1051 1051 HOH HOH . 
F 5 HOH A 51 1052 1052 HOH HOH . 
F 5 HOH A 52 1053 1053 HOH HOH . 
F 5 HOH A 53 1054 1054 HOH HOH . 
F 5 HOH A 54 1055 1055 HOH HOH . 
F 5 HOH A 55 1056 1056 HOH HOH . 
F 5 HOH A 56 1057 1057 HOH HOH . 
F 5 HOH A 57 1058 1058 HOH HOH . 
F 5 HOH A 58 1059 1059 HOH HOH . 
F 5 HOH A 59 1060 1060 HOH HOH . 
F 5 HOH A 60 1061 1061 HOH HOH . 
F 5 HOH A 61 1062 1062 HOH HOH . 
F 5 HOH A 62 1063 1063 HOH HOH . 
F 5 HOH A 63 1064 1064 HOH HOH . 
F 5 HOH A 64 1065 1065 HOH HOH . 
F 5 HOH A 65 1066 1066 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               9.296 
_atom_site.Cartn_y               31.3 
_atom_site.Cartn_z               31.752 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        27.81 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           202 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#