data_1EJH
#
_model_server_result.job_id            nB2SbpzyNhh45iKBGJnc-w 
_model_server_result.datetime_utc      '2024-10-19 10:28:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ejh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":1003}' 
#
_entry.id    1EJH 
#
_exptl.entry_id    1EJH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              458.235 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1EJH 
_cell.length_a            140.6 
_cell.length_b            140.6 
_cell.length_c            39.4 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1EJH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,I,M,Q 1 1 
B,F,J,N,R 2 1 
C,G,K,O 3 1 
D,H,L,P 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
#
_chem_comp.formula           'C11 H18 N5 O11 P2 1' 
_chem_comp.formula_weight    458.235 
_chem_comp.id                M7G 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A M7G doub 218 n n 
PA O2A M7G sing 219 n n 
PA O3A M7G sing 220 n n 
PA O5' M7G sing 221 n n 
O2A HOA2 M7G sing 222 n n 
O3A PB M7G sing 223 n n 
O5' C5' M7G sing 224 n n 
PB O1B M7G doub 225 n n 
PB O2B M7G sing 226 n n 
PB O3B M7G sing 227 n n 
O2B HOB2 M7G sing 228 n n 
O3B HOB3 M7G sing 229 n n 
C5' C4' M7G sing 230 n n 
C5' "H5'1" M7G sing 231 n n 
C5' "H5'2" M7G sing 232 n n 
C4' O4' M7G sing 233 n n 
C4' C3' M7G sing 234 n n 
C4' H4' M7G sing 235 n n 
O4' C1' M7G sing 236 n n 
C3' O3' M7G sing 237 n n 
C3' C2' M7G sing 238 n n 
C3' H3' M7G sing 239 n n 
O3' HO3' M7G sing 240 n n 
C2' O2' M7G sing 241 n n 
C2' C1' M7G sing 242 n n 
C2' H2' M7G sing 243 n n 
O2' HO2' M7G sing 244 n n 
C1' N9 M7G sing 245 n n 
C1' H1' M7G sing 246 n n 
N9 C8 M7G sing 247 n y 
N9 C4 M7G sing 248 n y 
C8 N7 M7G doub 249 n y 
C8 H81 M7G sing 250 n n 
N7 CM7 M7G sing 251 n n 
N7 C5 M7G sing 252 n y 
CM7 HM71 M7G sing 253 n n 
CM7 HM72 M7G sing 254 n n 
CM7 HM73 M7G sing 255 n n 
C5 C6 M7G sing 256 n n 
C5 C4 M7G doub 257 n y 
C6 O6 M7G doub 258 n n 
C6 N1 M7G sing 259 n n 
N1 C2 M7G sing 260 n n 
N1 HN1 M7G sing 261 n n 
C2 N2 M7G sing 262 n n 
C2 N3 M7G doub 263 n n 
N2 HN21 M7G sing 264 n n 
N2 HN22 M7G sing 265 n n 
N3 C4 M7G sing 266 n n 
#
_atom_sites.entry_id                     1EJH 
_atom_sites.fract_transf_matrix[1][1]    0.007112 
_atom_sites.fract_transf_matrix[1][2]    0.004106 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008213 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025381 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 M7G A 1 1001 1000 M7G M7G . 
J 3 M7G B 1 1002 1000 M7G M7G . 
K 3 M7G C 1 1003 1000 M7G M7G . 
L 3 M7G D 1 1004 1000 M7G M7G . 
M 4 HOH A 1 1002 2 HOH TIP . 
M 4 HOH A 2 1003 5 HOH TIP . 
M 4 HOH A 3 1004 7 HOH TIP . 
M 4 HOH A 4 1005 8 HOH TIP . 
M 4 HOH A 5 1006 13 HOH TIP . 
M 4 HOH A 6 1007 16 HOH TIP . 
M 4 HOH A 7 1008 17 HOH TIP . 
M 4 HOH A 8 1009 20 HOH TIP . 
M 4 HOH A 9 1010 21 HOH TIP . 
M 4 HOH A 10 1011 22 HOH TIP . 
M 4 HOH A 11 1012 23 HOH TIP . 
M 4 HOH A 12 1013 25 HOH TIP . 
M 4 HOH A 13 1014 33 HOH TIP . 
M 4 HOH A 14 1015 40 HOH TIP . 
M 4 HOH A 15 1016 41 HOH TIP . 
M 4 HOH A 16 1017 42 HOH TIP . 
M 4 HOH A 17 1018 45 HOH TIP . 
M 4 HOH A 18 1019 48 HOH TIP . 
M 4 HOH A 19 1020 52 HOH TIP . 
M 4 HOH A 20 1021 55 HOH TIP . 
M 4 HOH A 21 1022 60 HOH TIP . 
M 4 HOH A 22 1023 66 HOH TIP . 
M 4 HOH A 23 1024 69 HOH TIP . 
M 4 HOH A 24 1025 72 HOH TIP . 
M 4 HOH A 25 1026 73 HOH TIP . 
M 4 HOH A 26 1027 78 HOH TIP . 
M 4 HOH A 27 1028 81 HOH TIP . 
M 4 HOH A 28 1029 83 HOH TIP . 
M 4 HOH A 29 1030 96 HOH TIP . 
M 4 HOH A 30 1031 101 HOH TIP . 
M 4 HOH A 31 1032 106 HOH TIP . 
M 4 HOH A 32 1033 110 HOH TIP . 
M 4 HOH A 33 1034 113 HOH TIP . 
M 4 HOH A 34 1035 114 HOH TIP . 
M 4 HOH A 35 1036 120 HOH TIP . 
N 4 HOH B 1 1003 1 HOH TIP . 
N 4 HOH B 2 1004 4 HOH TIP . 
N 4 HOH B 3 1005 6 HOH TIP . 
N 4 HOH B 4 1006 10 HOH TIP . 
N 4 HOH B 5 1007 12 HOH TIP . 
N 4 HOH B 6 1008 14 HOH TIP . 
N 4 HOH B 7 1009 15 HOH TIP . 
N 4 HOH B 8 1010 27 HOH TIP . 
N 4 HOH B 9 1011 30 HOH TIP . 
N 4 HOH B 10 1012 34 HOH TIP . 
N 4 HOH B 11 1013 35 HOH TIP . 
N 4 HOH B 12 1014 36 HOH TIP . 
N 4 HOH B 13 1015 38 HOH TIP . 
N 4 HOH B 14 1016 47 HOH TIP . 
N 4 HOH B 15 1017 49 HOH TIP . 
N 4 HOH B 16 1018 51 HOH TIP . 
N 4 HOH B 17 1019 53 HOH TIP . 
N 4 HOH B 18 1020 56 HOH TIP . 
N 4 HOH B 19 1021 57 HOH TIP . 
N 4 HOH B 20 1022 59 HOH TIP . 
N 4 HOH B 21 1023 63 HOH TIP . 
N 4 HOH B 22 1024 67 HOH TIP . 
N 4 HOH B 23 1025 77 HOH TIP . 
N 4 HOH B 24 1026 82 HOH TIP . 
N 4 HOH B 25 1027 84 HOH TIP . 
N 4 HOH B 26 1028 85 HOH TIP . 
N 4 HOH B 27 1029 86 HOH TIP . 
N 4 HOH B 28 1030 89 HOH TIP . 
N 4 HOH B 29 1031 90 HOH TIP . 
N 4 HOH B 30 1032 94 HOH TIP . 
N 4 HOH B 31 1033 95 HOH TIP . 
N 4 HOH B 32 1034 97 HOH TIP . 
N 4 HOH B 33 1035 100 HOH TIP . 
N 4 HOH B 34 1036 102 HOH TIP . 
N 4 HOH B 35 1037 103 HOH TIP . 
N 4 HOH B 36 1038 105 HOH TIP . 
N 4 HOH B 37 1039 111 HOH TIP . 
N 4 HOH B 38 1040 116 HOH TIP . 
O 4 HOH C 1 1004 3 HOH TIP . 
O 4 HOH C 2 1005 11 HOH TIP . 
O 4 HOH C 3 1006 18 HOH TIP . 
O 4 HOH C 4 1007 37 HOH TIP . 
O 4 HOH C 5 1008 39 HOH TIP . 
O 4 HOH C 6 1009 44 HOH TIP . 
O 4 HOH C 7 1010 46 HOH TIP . 
O 4 HOH C 8 1011 64 HOH TIP . 
O 4 HOH C 9 1012 65 HOH TIP . 
O 4 HOH C 10 1013 68 HOH TIP . 
O 4 HOH C 11 1014 70 HOH TIP . 
O 4 HOH C 12 1015 79 HOH TIP . 
O 4 HOH C 13 1016 92 HOH TIP . 
O 4 HOH C 14 1017 93 HOH TIP . 
O 4 HOH C 15 1018 98 HOH TIP . 
O 4 HOH C 16 1019 107 HOH TIP . 
O 4 HOH C 17 1020 108 HOH TIP . 
O 4 HOH C 18 1021 117 HOH TIP . 
O 4 HOH C 19 1022 118 HOH TIP . 
P 4 HOH D 1 1005 9 HOH TIP . 
P 4 HOH D 2 1006 28 HOH TIP . 
P 4 HOH D 3 1007 43 HOH TIP . 
P 4 HOH D 4 1008 58 HOH TIP . 
P 4 HOH D 5 1009 61 HOH TIP . 
P 4 HOH D 6 1010 74 HOH TIP . 
P 4 HOH D 7 1011 76 HOH TIP . 
P 4 HOH D 8 1012 80 HOH TIP . 
P 4 HOH D 9 1013 109 HOH TIP . 
P 4 HOH D 10 1014 119 HOH TIP . 
Q 4 HOH E 1 62 62 HOH TIP . 
Q 4 HOH E 2 87 87 HOH TIP . 
Q 4 HOH E 3 88 88 HOH TIP . 
Q 4 HOH E 4 104 104 HOH TIP . 
Q 4 HOH E 5 112 112 HOH TIP . 
R 4 HOH F 1 31 31 HOH TIP . 
R 4 HOH F 2 32 32 HOH TIP . 
R 4 HOH F 3 54 54 HOH TIP . 
R 4 HOH F 4 115 115 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA M7G . . . K 3 38.954 43.917 41.227 1 32.36 ? PA M7G 1003 C 1 
HETATM 2 O O1A M7G . . . K 3 37.481 44.026 41.298 1 34.6 ? O1A M7G 1003 C 1 
HETATM 3 O O2A M7G . . . K 3 39.486 45.05 40.448 1 34.08 ? O2A M7G 1003 C 1 
HETATM 4 O O3A M7G . . . K 3 39.583 43.964 42.689 1 34.69 ? O3A M7G 1003 C 1 
HETATM 5 O O5' M7G . . . K 3 39.415 42.539 40.509 1 33.01 ? O5' M7G 1003 C 1 
HETATM 6 P PB M7G . . . K 3 39.053 43.023 43.846 1 35.13 ? PB M7G 1003 C 1 
HETATM 7 O O1B M7G . . . K 3 37.658 42.626 43.591 1 35.13 ? O1B M7G 1003 C 1 
HETATM 8 O O2B M7G . . . K 3 39.126 43.787 45.103 1 37.31 ? O2B M7G 1003 C 1 
HETATM 9 O O3B M7G . . . K 3 39.918 41.839 43.912 1 35.89 ? O3B M7G 1003 C 1 
HETATM 10 C C5' M7G . . . K 3 38.642 41.364 40.525 1 32.05 ? C5' M7G 1003 C 1 
HETATM 11 C C4' M7G . . . K 3 38.869 40.444 39.372 1 32 ? C4' M7G 1003 C 1 
HETATM 12 O O4' M7G . . . K 3 38.065 40.964 38.313 1 29.22 ? O4' M7G 1003 C 1 
HETATM 13 C C3' M7G . . . K 3 40.236 40.459 38.745 1 31.15 ? C3' M7G 1003 C 1 
HETATM 14 O O3' M7G . . . K 3 41.119 39.488 39.364 1 33.63 ? O3' M7G 1003 C 1 
HETATM 15 C C2' M7G . . . K 3 39.959 39.972 37.297 1 30.47 ? C2' M7G 1003 C 1 
HETATM 16 O O2' M7G . . . K 3 39.811 38.494 37.243 1 31.71 ? O2' M7G 1003 C 1 
HETATM 17 C C1' M7G . . . K 3 38.664 40.723 37.031 1 29.83 ? C1' M7G 1003 C 1 
HETATM 18 N N9 M7G . . . K 3 38.753 42.117 36.523 1 28.6 ? N9 M7G 1003 C 1 
HETATM 19 C C8 M7G . . . K 3 38.844 43.34 37.105 1 27.52 ? C8 M7G 1003 C 1 
HETATM 20 N N7 M7G . . . K 3 38.907 44.248 36.165 1 27.88 ? N7 M7G 1003 C 1 
HETATM 21 C CM7 M7G . . . K 3 39.012 45.694 36.38 1 26.26 ? CM7 M7G 1003 C 1 
HETATM 22 C C5 M7G . . . K 3 38.869 43.627 34.788 1 26.15 ? C5 M7G 1003 C 1 
HETATM 23 C C6 M7G . . . K 3 38.901 44.025 33.574 1 25.15 ? C6 M7G 1003 C 1 
HETATM 24 O O6 M7G . . . K 3 39.002 45.246 33.246 1 27.24 ? O6 M7G 1003 C 1 
HETATM 25 N N1 M7G . . . K 3 38.821 42.952 32.652 1 24.99 ? N1 M7G 1003 C 1 
HETATM 26 C C2 M7G . . . K 3 38.718 41.61 32.975 1 25.62 ? C2 M7G 1003 C 1 
HETATM 27 N N2 M7G . . . K 3 38.653 40.732 32.009 1 24.19 ? N2 M7G 1003 C 1 
HETATM 28 N N3 M7G . . . K 3 38.682 41.189 34.257 1 25.85 ? N3 M7G 1003 C 1 
HETATM 29 C C4 M7G . . . K 3 38.764 42.241 35.174 1 26.53 ? C4 M7G 1003 C 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           29 
#