data_1EJN # _model_server_result.job_id 9ywAmX_rDsTU47QFLcuHTQ _model_server_result.datetime_utc '2025-02-05 10:42:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ejn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":800}' # _entry.id 1EJN # _exptl.entry_id 1EJN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 341.451 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-(1-ADAMANTYL)-N'-(4-GUANIDINOBENZYL)UREA" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1EJN _cell.length_a 52.85 _cell.length_b 54.77 _cell.length_c 81.58 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EJN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 31 A CYS 42 1_555 A SG CYS 47 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 A SG CYS 39 A CYS 50 1_555 A SG CYS 110 A CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 A SG CYS 135 A CYS 136 1_555 A SG CYS 204 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 167 A CYS 168 1_555 A SG CYS 183 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf5 A SG CYS 194 A CYS 191 1_555 A SG CYS 222 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C19 H27 N5 O' _chem_comp.formula_weight 341.451 _chem_comp.id AGB _chem_comp.mon_nstd_flag . _chem_comp.name "N-(1-ADAMANTYL)-N'-(4-GUANIDINOBENZYL)UREA" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 AGB sing 1 n n C1 C3 AGB sing 2 n n C1 C4 AGB sing 3 n n C1 H1 AGB sing 4 n n C2 C6 AGB sing 5 n n C2 H21 AGB sing 6 n n C2 H22 AGB sing 7 n n C3 C10 AGB sing 8 n n C3 H31 AGB sing 9 n n C3 H32 AGB sing 10 n n C4 C7 AGB sing 11 n n C4 H41 AGB sing 12 n n C4 H42 AGB sing 13 n n C5 C6 AGB sing 14 n n C5 C7 AGB sing 15 n n C5 H51 AGB sing 16 n n C5 H52 AGB sing 17 n n C6 C8 AGB sing 18 n n C6 H6 AGB sing 19 n n C7 C9 AGB sing 20 n n C7 H7 AGB sing 21 n n C8 C10 AGB sing 22 n n C8 H81 AGB sing 23 n n C8 H82 AGB sing 24 n n C9 C10 AGB sing 25 n n C9 H91 AGB sing 26 n n C9 H92 AGB sing 27 n n C10 N2 AGB sing 28 n n N1 C12 AGB sing 29 n n N1 C11 AGB sing 30 n n N1 HN1 AGB sing 31 n n C12 N2 AGB sing 32 n n C12 O1 AGB doub 33 n n N2 HN2 AGB sing 34 n n C11 C14 AGB sing 35 n n C11 H111 AGB sing 36 n n C11 H112 AGB sing 37 n n C13 C14 AGB doub 38 n y C13 C18 AGB sing 39 n y C13 H13 AGB sing 40 n n C14 C15 AGB sing 41 n y C15 C16 AGB doub 42 n y C15 H15 AGB sing 43 n n C16 C17 AGB sing 44 n y C16 H16 AGB sing 45 n n C17 C18 AGB doub 46 n y C17 N3 AGB sing 47 n n C18 H18 AGB sing 48 n n N3 C19 AGB sing 49 n n N3 HN3 AGB sing 50 n n N4 C19 AGB doub 51 n n N4 HN4 AGB sing 52 n n C19 N5 AGB sing 53 n n N5 HN51 AGB sing 54 n n N5 HN52 AGB sing 55 n n # _atom_sites.entry_id 1EJN _atom_sites.fract_transf_matrix[1][1] 0.018921 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018258 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012258 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 900 900 SO4 SO4 . C 3 AGB A 1 800 293 AGB Q29 . D 4 HOH A 1 901 2 HOH WAT . D 4 HOH A 2 902 3 HOH WAT . D 4 HOH A 3 903 4 HOH WAT . D 4 HOH A 4 904 5 HOH WAT . D 4 HOH A 5 905 6 HOH WAT . D 4 HOH A 6 906 7 HOH WAT . D 4 HOH A 7 907 8 HOH WAT . D 4 HOH A 8 908 9 HOH WAT . D 4 HOH A 9 909 10 HOH WAT . D 4 HOH A 10 910 11 HOH WAT . D 4 HOH A 11 911 12 HOH WAT . D 4 HOH A 12 912 13 HOH WAT . D 4 HOH A 13 913 14 HOH WAT . D 4 HOH A 14 914 15 HOH WAT . D 4 HOH A 15 915 16 HOH WAT . D 4 HOH A 16 916 17 HOH WAT . D 4 HOH A 17 917 18 HOH WAT . D 4 HOH A 18 918 19 HOH WAT . D 4 HOH A 19 919 20 HOH WAT . D 4 HOH A 20 920 21 HOH WAT . D 4 HOH A 21 921 22 HOH WAT . D 4 HOH A 22 922 23 HOH WAT . D 4 HOH A 23 923 24 HOH WAT . D 4 HOH A 24 924 25 HOH WAT . D 4 HOH A 25 925 26 HOH WAT . D 4 HOH A 26 926 27 HOH WAT . D 4 HOH A 27 927 28 HOH WAT . D 4 HOH A 28 928 29 HOH WAT . D 4 HOH A 29 929 30 HOH WAT . D 4 HOH A 30 930 31 HOH WAT . D 4 HOH A 31 931 32 HOH WAT . D 4 HOH A 32 932 33 HOH WAT . D 4 HOH A 33 933 34 HOH WAT . D 4 HOH A 34 934 35 HOH WAT . D 4 HOH A 35 935 37 HOH WAT . D 4 HOH A 36 936 38 HOH WAT . D 4 HOH A 37 937 39 HOH WAT . D 4 HOH A 38 938 40 HOH WAT . D 4 HOH A 39 939 41 HOH WAT . D 4 HOH A 40 940 42 HOH WAT . D 4 HOH A 41 941 43 HOH WAT . D 4 HOH A 42 942 44 HOH WAT . D 4 HOH A 43 943 45 HOH WAT . D 4 HOH A 44 944 46 HOH WAT . D 4 HOH A 45 945 47 HOH WAT . D 4 HOH A 46 946 48 HOH WAT . D 4 HOH A 47 947 49 HOH WAT . D 4 HOH A 48 948 50 HOH WAT . D 4 HOH A 49 949 51 HOH WAT . D 4 HOH A 50 950 52 HOH WAT . D 4 HOH A 51 951 53 HOH WAT . D 4 HOH A 52 952 54 HOH WAT . D 4 HOH A 53 953 55 HOH WAT . D 4 HOH A 54 954 56 HOH WAT . D 4 HOH A 55 955 57 HOH WAT . D 4 HOH A 56 956 58 HOH WAT . D 4 HOH A 57 957 59 HOH WAT . D 4 HOH A 58 958 60 HOH WAT . D 4 HOH A 59 959 61 HOH WAT . D 4 HOH A 60 960 62 HOH WAT . D 4 HOH A 61 961 63 HOH WAT . D 4 HOH A 62 962 64 HOH WAT . D 4 HOH A 63 963 65 HOH WAT . D 4 HOH A 64 964 66 HOH WAT . D 4 HOH A 65 965 67 HOH WAT . D 4 HOH A 66 966 68 HOH WAT . D 4 HOH A 67 967 69 HOH WAT . D 4 HOH A 68 968 70 HOH WAT . D 4 HOH A 69 969 71 HOH WAT . D 4 HOH A 70 970 72 HOH WAT . D 4 HOH A 71 971 73 HOH WAT . D 4 HOH A 72 972 74 HOH WAT . D 4 HOH A 73 973 75 HOH WAT . D 4 HOH A 74 974 77 HOH WAT . D 4 HOH A 75 975 78 HOH WAT . D 4 HOH A 76 976 79 HOH WAT . D 4 HOH A 77 977 80 HOH WAT . D 4 HOH A 78 978 81 HOH WAT . D 4 HOH A 79 979 82 HOH WAT . D 4 HOH A 80 980 83 HOH WAT . D 4 HOH A 81 981 84 HOH WAT . D 4 HOH A 82 982 85 HOH WAT . D 4 HOH A 83 983 86 HOH WAT . D 4 HOH A 84 984 87 HOH WAT . D 4 HOH A 85 985 88 HOH WAT . D 4 HOH A 86 986 89 HOH WAT . D 4 HOH A 87 987 90 HOH WAT . D 4 HOH A 88 988 91 HOH WAT . D 4 HOH A 89 989 92 HOH WAT . D 4 HOH A 90 990 93 HOH WAT . D 4 HOH A 91 991 94 HOH WAT . D 4 HOH A 92 992 95 HOH WAT . D 4 HOH A 93 993 96 HOH WAT . D 4 HOH A 94 994 502 HOH WAT . D 4 HOH A 95 995 504 HOH WAT . D 4 HOH A 96 996 505 HOH WAT . D 4 HOH A 97 997 506 HOH WAT . D 4 HOH A 98 998 507 HOH WAT . D 4 HOH A 99 999 508 HOH WAT . D 4 HOH A 100 1000 509 HOH WAT . D 4 HOH A 101 1001 510 HOH WAT . D 4 HOH A 102 1002 511 HOH WAT . D 4 HOH A 103 1003 512 HOH WAT . D 4 HOH A 104 1004 513 HOH WAT . D 4 HOH A 105 1005 514 HOH WAT . D 4 HOH A 106 1006 515 HOH WAT . D 4 HOH A 107 1007 516 HOH WAT . D 4 HOH A 108 1008 517 HOH WAT . D 4 HOH A 109 1009 518 HOH WAT . D 4 HOH A 110 1010 519 HOH WAT . D 4 HOH A 111 1011 520 HOH WAT . D 4 HOH A 112 1012 521 HOH WAT . D 4 HOH A 113 1013 522 HOH WAT . D 4 HOH A 114 1014 523 HOH WAT . D 4 HOH A 115 1015 524 HOH WAT . D 4 HOH A 116 1016 525 HOH WAT . D 4 HOH A 117 1017 526 HOH WAT . D 4 HOH A 118 1018 601 HOH WAT . D 4 HOH A 119 1019 602 HOH WAT . D 4 HOH A 120 1020 603 HOH WAT . D 4 HOH A 121 1021 604 HOH WAT . D 4 HOH A 122 1022 605 HOH WAT . D 4 HOH A 123 1023 606 HOH WAT . D 4 HOH A 124 1024 607 HOH WAT . D 4 HOH A 125 1025 608 HOH WAT . D 4 HOH A 126 1026 609 HOH WAT . D 4 HOH A 127 1027 610 HOH WAT . D 4 HOH A 128 1028 611 HOH WAT . D 4 HOH A 129 1029 612 HOH WAT . D 4 HOH A 130 1030 613 HOH WAT . D 4 HOH A 131 1031 614 HOH WAT . D 4 HOH A 132 1032 615 HOH WAT . D 4 HOH A 133 1033 616 HOH WAT . D 4 HOH A 134 1034 617 HOH WAT . D 4 HOH A 135 1035 619 HOH WAT . D 4 HOH A 136 1036 620 HOH WAT . D 4 HOH A 137 1037 621 HOH WAT . D 4 HOH A 138 1038 622 HOH WAT . D 4 HOH A 139 1039 623 HOH WAT . D 4 HOH A 140 1040 624 HOH WAT . D 4 HOH A 141 1041 625 HOH WAT . D 4 HOH A 142 1042 626 HOH WAT . D 4 HOH A 143 1043 627 HOH WAT . D 4 HOH A 144 1044 628 HOH WAT . D 4 HOH A 145 1045 629 HOH WAT . D 4 HOH A 146 1046 630 HOH WAT . D 4 HOH A 147 1047 631 HOH WAT . D 4 HOH A 148 1048 701 HOH WAT . D 4 HOH A 149 1049 702 HOH WAT . D 4 HOH A 150 1050 703 HOH WAT . D 4 HOH A 151 1051 704 HOH WAT . D 4 HOH A 152 1052 705 HOH WAT . D 4 HOH A 153 1053 706 HOH WAT . D 4 HOH A 154 1054 707 HOH WAT . D 4 HOH A 155 1055 708 HOH WAT . D 4 HOH A 156 1056 709 HOH WAT . D 4 HOH A 157 1057 710 HOH WAT . D 4 HOH A 158 1058 711 HOH WAT . D 4 HOH A 159 1059 712 HOH WAT . D 4 HOH A 160 1060 713 HOH WAT . D 4 HOH A 161 1061 714 HOH WAT . D 4 HOH A 162 1062 715 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AGB . . . C 3 22.616 11.298 27.097 1 21.3 ? C1 AGB 800 A 1 HETATM 2 C C2 AGB . . . C 3 22.796 12.765 27.579 1 29.47 ? C2 AGB 800 A 1 HETATM 3 C C3 AGB . . . C 3 23.992 10.549 27.135 1 32.44 ? C3 AGB 800 A 1 HETATM 4 C C4 AGB . . . C 3 21.6 10.57 28.028 1 26.47 ? C4 AGB 800 A 1 HETATM 5 C C5 AGB . . . C 3 22.33 12.04 29.973 1 28.2 ? C5 AGB 800 A 1 HETATM 6 C C6 AGB . . . C 3 23.345 12.757 29.031 1 30.7 ? C6 AGB 800 A 1 HETATM 7 C C7 AGB . . . C 3 22.14 10.57 29.491 1 31.42 ? C7 AGB 800 A 1 HETATM 8 C C8 AGB . . . C 3 24.707 12 29.069 1 31.17 ? C8 AGB 800 A 1 HETATM 9 C C9 AGB . . . C 3 23.505 9.813 29.546 1 22.57 ? C9 AGB 800 A 1 HETATM 10 C C10 AGB . . . C 3 24.538 10.513 28.604 1 25.88 ? C10 AGB 800 A 1 HETATM 11 N N1 AGB . . . C 3 27.203 8.02 29.094 1 25.01 ? N1 AGB 800 A 1 HETATM 12 C C12 AGB . . . C 3 26.083 8.532 28.549 1 21.27 ? C12 AGB 800 A 1 HETATM 13 N N2 AGB . . . C 3 25.856 9.863 28.707 1 23.88 ? N2 AGB 800 A 1 HETATM 14 O O1 AGB . . . C 3 25.316 7.784 27.936 1 17.03 ? O1 AGB 800 A 1 HETATM 15 C C11 AGB . . . C 3 27.582 6.642 28.835 1 23.86 ? C11 AGB 800 A 1 HETATM 16 C C13 AGB . . . C 3 29.779 5.499 29.381 1 21.43 ? C13 AGB 800 A 1 HETATM 17 C C14 AGB . . . C 3 29.09 6.488 28.66 1 19.28 ? C14 AGB 800 A 1 HETATM 18 C C15 AGB . . . C 3 29.799 7.326 27.768 1 19.94 ? C15 AGB 800 A 1 HETATM 19 C C16 AGB . . . C 3 31.162 7.074 27.51 1 24.2 ? C16 AGB 800 A 1 HETATM 20 C C17 AGB . . . C 3 31.792 5.996 28.148 1 24.53 ? C17 AGB 800 A 1 HETATM 21 C C18 AGB . . . C 3 31.105 5.208 29.077 1 18.43 ? C18 AGB 800 A 1 HETATM 22 N N3 AGB . . . C 3 33.196 5.899 27.639 1 25.78 ? N3 AGB 800 A 1 HETATM 23 N N4 AGB . . . C 3 33.234 3.427 27.526 1 20.33 ? N4 AGB 800 A 1 HETATM 24 C C19 AGB . . . C 3 33.58 4.67 27.513 1 22.79 ? C19 AGB 800 A 1 HETATM 25 N N5 AGB . . . C 3 34.851 4.876 27.281 1 20.49 ? N5 AGB 800 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #