data_1EK2 # _model_server_result.job_id YoWfi9Sohs9f_khWYnx8jw _model_server_result.datetime_utc '2024-11-16 17:40:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ek2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1200}' # _entry.id 1EK2 # _exptl.entry_id 1EK2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.465 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-CYCLOHEXYL-N'-DECYLUREA" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1EK2 _cell.length_a 151.9 _cell.length_b 143 _cell.length_c 60 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EK2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C17 H34 N2 O' _chem_comp.formula_weight 282.465 _chem_comp.id CDU _chem_comp.mon_nstd_flag . _chem_comp.name "N-CYCLOHEXYL-N'-DECYLUREA" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CDU sing 70 n n C1 C6 CDU sing 71 n n C1 HC11 CDU sing 72 n n C1 HC12 CDU sing 73 n n C2 C3 CDU sing 74 n n C2 HC21 CDU sing 75 n n C2 HC22 CDU sing 76 n n C3 C4 CDU sing 77 n n C3 HC31 CDU sing 78 n n C3 HC32 CDU sing 79 n n C4 C5 CDU sing 80 n n C4 HC41 CDU sing 81 n n C4 HC42 CDU sing 82 n n C5 C6 CDU sing 83 n n C5 N1 CDU sing 84 n n C5 HC51 CDU sing 85 n n C6 HC61 CDU sing 86 n n C6 HC62 CDU sing 87 n n N1 C8 CDU sing 88 n n N1 HN1 CDU sing 89 n n C8 O CDU doub 90 n n C8 N2 CDU sing 91 n n N2 C11 CDU sing 92 n n N2 HN2 CDU sing 93 n n C11 C12 CDU sing 94 n n C11 H111 CDU sing 95 n n C11 H112 CDU sing 96 n n C12 C13 CDU sing 97 n n C12 H121 CDU sing 98 n n C12 H122 CDU sing 99 n n C13 C14 CDU sing 100 n n C13 H131 CDU sing 101 n n C13 H132 CDU sing 102 n n C14 C15 CDU sing 103 n n C14 H141 CDU sing 104 n n C14 H142 CDU sing 105 n n C15 C16 CDU sing 106 n n C15 H151 CDU sing 107 n n C15 H152 CDU sing 108 n n C16 C17 CDU sing 109 n n C16 H161 CDU sing 110 n n C16 H162 CDU sing 111 n n C17 C18 CDU sing 112 n n C17 H171 CDU sing 113 n n C17 H172 CDU sing 114 n n C18 C19 CDU sing 115 n n C18 H181 CDU sing 116 n n C18 H182 CDU sing 117 n n C19 C20 CDU sing 118 n n C19 H191 CDU sing 119 n n C19 H192 CDU sing 120 n n C20 H201 CDU sing 121 n n C20 H202 CDU sing 122 n n C20 H203 CDU sing 123 n n # _atom_sites.entry_id 1EK2 _atom_sites.fract_transf_matrix[1][1] 0.006583 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006993 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016667 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CDU A 1 1100 1100 CDU CDU . D 2 CDU B 1 1200 1200 CDU CDU . E 3 HOH A 1 2001 2001 HOH HOH . E 3 HOH A 2 2002 2002 HOH HOH . E 3 HOH A 3 2003 2003 HOH HOH . E 3 HOH A 4 2007 2007 HOH HOH . E 3 HOH A 5 2008 2008 HOH HOH . E 3 HOH A 6 2012 2012 HOH HOH . E 3 HOH A 7 2016 2016 HOH HOH . E 3 HOH A 8 2017 2017 HOH HOH . E 3 HOH A 9 2018 2018 HOH HOH . E 3 HOH A 10 2019 2019 HOH HOH . F 3 HOH B 1 2004 2004 HOH HOH . F 3 HOH B 2 2005 2005 HOH HOH . F 3 HOH B 3 2006 2006 HOH HOH . F 3 HOH B 4 2009 2009 HOH HOH . F 3 HOH B 5 2010 2010 HOH HOH . F 3 HOH B 6 2011 2011 HOH HOH . F 3 HOH B 7 2013 2013 HOH HOH . F 3 HOH B 8 2014 2014 HOH HOH . F 3 HOH B 9 2015 2015 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CDU . . . D 2 -46.754 -58.645 -53.612 1 52.57 ? C1 CDU 1200 B 1 HETATM 2 C C2 CDU . . . D 2 -48.12 -59.452 -53.758 1 32.5 ? C2 CDU 1200 B 1 HETATM 3 C C3 CDU . . . D 2 -47.971 -61.007 -53.458 1 37.43 ? C3 CDU 1200 B 1 HETATM 4 C C4 CDU . . . D 2 -46.666 -61.647 -54.122 1 39.48 ? C4 CDU 1200 B 1 HETATM 5 C C5 CDU . . . D 2 -45.335 -60.845 -53.824 1 28.42 ? C5 CDU 1200 B 1 HETATM 6 C C6 CDU . . . D 2 -45.537 -59.358 -54.353 1 39.51 ? C6 CDU 1200 B 1 HETATM 7 N N1 CDU . . . D 2 -44.193 -61.555 -54.55 1 32.2 ? N1 CDU 1200 B 1 HETATM 8 C C8 CDU . . . D 2 -42.849 -61.288 -54.627 1 29.67 ? C8 CDU 1200 B 1 HETATM 9 O O CDU . . . D 2 -42.454 -60.297 -53.977 1 22.1 ? O CDU 1200 B 1 HETATM 10 N N2 CDU . . . D 2 -41.875 -61.938 -55.331 1 27.34 ? N2 CDU 1200 B 1 HETATM 11 C C11 CDU . . . D 2 -40.432 -61.518 -55.353 1 37.39 ? C11 CDU 1200 B 1 HETATM 12 C C12 CDU . . . D 2 -39.601 -62.433 -56.264 1 24.61 ? C12 CDU 1200 B 1 HETATM 13 C C13 CDU . . . D 2 -38.108 -61.99 -56.306 1 53.7 ? C13 CDU 1200 B 1 HETATM 14 C C14 CDU . . . D 2 -37.684 -61.315 -57.668 1 63.01 ? C14 CDU 1200 B 1 HETATM 15 C C15 CDU . . . D 2 -36.127 -61.029 -57.823 1 37.37 ? C15 CDU 1200 B 1 HETATM 16 C C16 CDU . . . D 2 -35.506 -60.358 -56.557 1 46.98 ? C16 CDU 1200 B 1 HETATM 17 C C17 CDU . . . D 2 -33.989 -60.001 -56.718 1 61.71 ? C17 CDU 1200 B 1 HETATM 18 C C18 CDU . . . D 2 -33.129 -60.503 -55.5 1 58.14 ? C18 CDU 1200 B 1 HETATM 19 C C19 CDU . . . D 2 -31.61 -60.165 -55.641 1 59.16 ? C19 CDU 1200 B 1 HETATM 20 C C20 CDU . . . D 2 -30.768 -60.662 -54.436 1 39.6 ? C20 CDU 1200 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #