data_1EKB # _model_server_result.job_id ap6An9dfnzm5p-XolW7bwA _model_server_result.datetime_utc '2024-11-14 12:14:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ekb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":310}' # _entry.id 1EKB # _exptl.entry_id 1EKB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1EKB _cell.length_a 39.99 _cell.length_b 70.65 _cell.length_c 85.22 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EKB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 1 A CYS 1 1_555 B SG CYS 112 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? disulf ? disulf2 B SG CYS 26 B CYS 42 1_555 B SG CYS 42 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? disulf ? disulf3 B SG CYS 126 B CYS 136 1_555 B SG CYS 193 B CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? disulf ? disulf4 B SG CYS 157 B CYS 168 1_555 B SG CYS 172 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? disulf ? disulf5 B SG CYS 183 B CYS 191 1_555 B SG CYS 211 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? covale ? covale1 B NE2 HIS 41 B HIS 57 1_555 C C1 0QE 7 C 0QE 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? covale ? covale2 B OG SER 187 B SER 195 1_555 C C LYK 6 C LYK 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 ? covale ? covale3 C C ASP 5 C ASP 305 1_555 C N LYK 6 C LYK 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale4 C C LYK 6 C LYK 306 1_555 C C1 0QE 7 C 0QE 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.547 ? metalc ? metalc1 B OD2 ASP 34 B ASP 50 1_555 E ZN ZN . B ZN 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc2 B OE2 GLU 116 B GLU 126 1_555 D ZN ZN . B ZN 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc3 E ZN ZN . B ZN 311 1_555 G O HOH . B HOH 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1EKB _atom_sites.fract_transf_matrix[1][1] 0.025006 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014154 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011734 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN B 1 310 310 ZN ZN . E 4 ZN B 1 311 311 ZN ZN . F 5 HOH A 1 454 454 HOH HOH . F 5 HOH A 2 497 497 HOH HOH . F 5 HOH A 3 520 520 HOH HOH . G 5 HOH B 1 400 400 HOH HOH . G 5 HOH B 2 401 401 HOH HOH . G 5 HOH B 3 402 402 HOH HOH . G 5 HOH B 4 403 403 HOH HOH . G 5 HOH B 5 404 404 HOH HOH . G 5 HOH B 6 405 405 HOH HOH . G 5 HOH B 7 406 406 HOH HOH . G 5 HOH B 8 407 407 HOH HOH . G 5 HOH B 9 408 408 HOH HOH . G 5 HOH B 10 409 409 HOH HOH . G 5 HOH B 11 410 410 HOH HOH . G 5 HOH B 12 411 411 HOH HOH . G 5 HOH B 13 412 412 HOH HOH . G 5 HOH B 14 413 413 HOH HOH . G 5 HOH B 15 414 414 HOH HOH . G 5 HOH B 16 415 415 HOH HOH . G 5 HOH B 17 416 416 HOH HOH . G 5 HOH B 18 417 417 HOH HOH . G 5 HOH B 19 418 418 HOH HOH . G 5 HOH B 20 419 419 HOH HOH . G 5 HOH B 21 420 420 HOH HOH . G 5 HOH B 22 421 421 HOH HOH . G 5 HOH B 23 422 422 HOH HOH . G 5 HOH B 24 423 423 HOH HOH . G 5 HOH B 25 424 424 HOH HOH . G 5 HOH B 26 425 425 HOH HOH . G 5 HOH B 27 426 426 HOH HOH . G 5 HOH B 28 427 427 HOH HOH . G 5 HOH B 29 429 429 HOH HOH . G 5 HOH B 30 430 430 HOH HOH . G 5 HOH B 31 431 431 HOH HOH . G 5 HOH B 32 432 432 HOH HOH . G 5 HOH B 33 433 433 HOH HOH . G 5 HOH B 34 434 434 HOH HOH . G 5 HOH B 35 435 435 HOH HOH . G 5 HOH B 36 437 437 HOH HOH . G 5 HOH B 37 438 438 HOH HOH . G 5 HOH B 38 439 439 HOH HOH . G 5 HOH B 39 440 440 HOH HOH . G 5 HOH B 40 441 441 HOH HOH . G 5 HOH B 41 442 442 HOH HOH . G 5 HOH B 42 443 443 HOH HOH . G 5 HOH B 43 444 444 HOH HOH . G 5 HOH B 44 446 446 HOH HOH . G 5 HOH B 45 447 447 HOH HOH . G 5 HOH B 46 448 448 HOH HOH . G 5 HOH B 47 449 449 HOH HOH . G 5 HOH B 48 450 450 HOH HOH . G 5 HOH B 49 451 451 HOH HOH . G 5 HOH B 50 452 452 HOH HOH . G 5 HOH B 51 453 453 HOH HOH . G 5 HOH B 52 455 455 HOH HOH . G 5 HOH B 53 456 456 HOH HOH . G 5 HOH B 54 457 457 HOH HOH . G 5 HOH B 55 458 458 HOH HOH . G 5 HOH B 56 459 459 HOH HOH . G 5 HOH B 57 460 460 HOH HOH . G 5 HOH B 58 462 462 HOH HOH . G 5 HOH B 59 463 463 HOH HOH . G 5 HOH B 60 464 464 HOH HOH . G 5 HOH B 61 465 465 HOH HOH . G 5 HOH B 62 466 466 HOH HOH . G 5 HOH B 63 467 467 HOH HOH . G 5 HOH B 64 468 468 HOH HOH . G 5 HOH B 65 469 469 HOH HOH . G 5 HOH B 66 470 470 HOH HOH . G 5 HOH B 67 475 475 HOH HOH . G 5 HOH B 68 476 476 HOH HOH . G 5 HOH B 69 477 477 HOH HOH . G 5 HOH B 70 478 478 HOH HOH . G 5 HOH B 71 479 479 HOH HOH . G 5 HOH B 72 480 480 HOH HOH . G 5 HOH B 73 481 481 HOH HOH . G 5 HOH B 74 483 483 HOH HOH . G 5 HOH B 75 484 484 HOH HOH . G 5 HOH B 76 485 485 HOH HOH . G 5 HOH B 77 486 486 HOH HOH . G 5 HOH B 78 487 487 HOH HOH . G 5 HOH B 79 488 488 HOH HOH . G 5 HOH B 80 489 489 HOH HOH . G 5 HOH B 81 490 490 HOH HOH . G 5 HOH B 82 491 491 HOH HOH . G 5 HOH B 83 492 492 HOH HOH . G 5 HOH B 84 493 493 HOH HOH . G 5 HOH B 85 494 494 HOH HOH . G 5 HOH B 86 495 495 HOH HOH . G 5 HOH B 87 496 496 HOH HOH . G 5 HOH B 88 498 498 HOH HOH . G 5 HOH B 89 499 499 HOH HOH . G 5 HOH B 90 501 501 HOH HOH . G 5 HOH B 91 504 504 HOH HOH . G 5 HOH B 92 506 506 HOH HOH . G 5 HOH B 93 508 508 HOH HOH . G 5 HOH B 94 509 509 HOH HOH . G 5 HOH B 95 511 511 HOH HOH . G 5 HOH B 96 514 514 HOH HOH . G 5 HOH B 97 517 517 HOH HOH . G 5 HOH B 98 524 524 HOH HOH . G 5 HOH B 99 526 526 HOH HOH . G 5 HOH B 100 527 527 HOH HOH . H 5 HOH C 1 428 428 HOH HOH . H 5 HOH C 2 436 436 HOH HOH . H 5 HOH C 3 445 445 HOH HOH . H 5 HOH C 4 503 503 HOH HOH . H 5 HOH C 5 521 521 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 27.004 _atom_site.Cartn_y -5.915 _atom_site.Cartn_z 15.404 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.54 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 310 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #