data_1EKI # _model_server_result.job_id i8ejXiBgtwXfHcfcCijLCA _model_server_result.datetime_utc '2024-10-18 13:25:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1eki # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":41}' # _entry.id 1EKI # _exptl.entry_id 1EKI _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 58.933 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1EKI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EKI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 1GL 2GL C1 O1 . O3 HO3 . sing 2 ? 3 2 1 DDA DDA C1 O1 . O3 HO3 . sing 3 ? 3 3 2 ERI DDA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C 2GL 1 C 1 2GL A 32 2GL 2 n C 1GL 2 C 2 1GL A 31 1GL 2 n D 2GL 1 D 1 2GL B 22 2GL 2 n D 1GL 2 D 2 1GL B 21 1GL 3 n E DDA 1 E 1 DDA B 26 DDA 3 n E DDA 2 E 2 DDA B 25 DDA 3 n E ERI 3 E 3 ERI B 24 ERI 3 n F DDA 1 F 1 DDA B 36 DDA 3 n F DDA 2 F 2 DDA B 35 DDA 3 n F ERI 3 F 3 ERI B 34 ERI # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O3 2GL . C 2GL 1 1_555 C C1 1GL . C 1GL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 sing covale ? covale2 D O3 2GL . D 2GL 1 1_555 D C1 1GL . D 1GL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 sing covale ? covale3 E O3 DDA . E DDA 1 1_555 E C1 DDA . E DDA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 sing covale ? covale4 E O3 DDA . E DDA 2 1_555 E C1 ERI . E ERI 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 sing covale ? covale5 F O3 DDA . F DDA 1 1_555 F C1 DDA . F DDA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 sing covale ? covale6 F O3 DDA . F DDA 2 1_555 F C1 ERI . F ERI 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 sing metalc ? metalc1 H O9 CPH . A CPH 33 1_555 G CO CO . A CO 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? metalc ? metalc2 H O1 CPH . A CPH 33 1_555 G CO CO . A CO 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc3 H C9 CPH . A CPH 33 1_555 G CO CO . A CO 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc4 H C1 CPH . A CPH 33 1_555 G CO CO . A CO 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? metalc ? metalc5 G CO CO . A CO 41 1_555 I O9 CPH . B CPH 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.912 ? metalc ? metalc6 G CO CO . A CO 41 1_555 I O1 CPH . B CPH 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.863 ? metalc ? metalc7 G CO CO . A CO 41 1_555 I C9 CPH . B CPH 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc8 G CO CO . A CO 41 1_555 I C1 CPH . B CPH 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? hydrog WATSON-CRICK hydrog1 A N3 DT 1 A DT 1 1_555 B N1 DA 8 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A O4 DT 1 A DT 1 1_555 B N6 DA 8 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N3 DT 2 A DT 2 1_555 B N1 DA 7 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A O4 DT 2 A DT 2 1_555 B N6 DA 7 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N1 DG 3 A DG 3 1_555 B N3 DC 6 B DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N2 DG 3 A DG 3 1_555 B O2 DC 6 B DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A O6 DG 3 A DG 3 1_555 B N4 DC 6 B DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N1 DG 4 A DG 4 1_555 B N3 DC 5 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N2 DG 4 A DG 4 1_555 B O2 DC 5 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O6 DG 4 A DG 4 1_555 B N4 DC 5 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 DC 5 A DC 5 1_555 B N1 DG 4 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N4 DC 5 A DC 5 1_555 B O6 DG 4 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A O2 DC 5 A DC 5 1_555 B N2 DG 4 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N3 DC 6 A DC 6 1_555 B N1 DG 3 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N4 DC 6 A DC 6 1_555 B O6 DG 3 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O2 DC 6 A DC 6 1_555 B N2 DG 3 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N1 DA 7 A DA 7 1_555 B N3 DT 2 B DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N6 DA 7 A DA 7 1_555 B O4 DT 2 B DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N1 DA 8 A DA 8 1_555 B N3 DT 1 B DT 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N6 DA 8 A DA 8 1_555 B O4 DT 1 B DT 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Co 2' _chem_comp.formula_weight 58.933 _chem_comp.id CO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1EKI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 CO A 1 41 41 CO CO . H 5 CPH A 1 33 33 CPH CPH . I 5 CPH B 1 23 23 CPH CPH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CO _atom_site.label_atom_id CO _atom_site.label_comp_id CO _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 4 _atom_site.Cartn_x -0.28 _atom_site.Cartn_y 2.859 _atom_site.Cartn_z -0.046 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 0.14 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CO _atom_site.auth_comp_id CO _atom_site.auth_seq_id 41 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #