data_1EKK
#
_model_server_result.job_id            -gPFejBcr6mNjCrrV6UuBw 
_model_server_result.datetime_utc      '2024-11-22 20:57:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ekk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    1EKK 
#
_exptl.entry_id    1EKK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              64.064 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFUR DIOXIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1EKK 
_cell.length_a            78.04 
_cell.length_b            78.04 
_cell.length_c            232.84 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1EKK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA,PQS trimeric 3 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PQS trimeric 3 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1,2,3 
B,E,F,H 2 1 
B,E,F,H 3 1,4,5 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
4 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 39.02 67.584623 0 
5 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -39.02 67.584623 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLY 197 A GLY 197 1_555 A N CSD 198 A CSD 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.296 ? 
covale ? covale2 A C CSD 198 A CSD 198 1_555 A N LEU 199 A LEU 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? 
covale ? covale3 B C GLY 197 B GLY 197 1_555 B N CSD 198 B CSD 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.294 ? 
covale ? covale4 B C CSD 198 B CSD 198 1_555 B N LEU 199 B LEU 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.361 ? 
#
_chem_comp.formula           'O2 S' 
_chem_comp.formula_weight    64.064 
_chem_comp.id                SO2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFUR DIOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO2 doub 305 n n 
S O2 SO2 doub 306 n n 
#
_atom_sites.entry_id                     1EKK 
_atom_sites.fract_transf_matrix[1][1]    0.012814 
_atom_sites.fract_transf_matrix[1][2]    0.007398 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014796 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004295 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 TZE A 1 273 1 TZE THZ . 
D 3 SO2 A 1 301 1 SO2 SO5 . 
E 2 TZE B 1 273 2 TZE THZ . 
F 3 SO2 B 1 302 2 SO2 SO5 . 
G 4 HOH A 1 302 3 HOH HOH . 
G 4 HOH A 2 303 7 HOH HOH . 
G 4 HOH A 3 304 8 HOH HOH . 
G 4 HOH A 4 305 11 HOH HOH . 
G 4 HOH A 5 306 12 HOH HOH . 
G 4 HOH A 6 307 14 HOH HOH . 
G 4 HOH A 7 308 17 HOH HOH . 
G 4 HOH A 8 309 19 HOH HOH . 
G 4 HOH A 9 310 20 HOH HOH . 
G 4 HOH A 10 311 23 HOH HOH . 
G 4 HOH A 11 312 24 HOH HOH . 
G 4 HOH A 12 313 25 HOH HOH . 
G 4 HOH A 13 314 27 HOH HOH . 
G 4 HOH A 14 315 32 HOH HOH . 
G 4 HOH A 15 316 34 HOH HOH . 
G 4 HOH A 16 317 36 HOH HOH . 
G 4 HOH A 17 318 39 HOH HOH . 
G 4 HOH A 18 319 40 HOH HOH . 
G 4 HOH A 19 320 41 HOH HOH . 
G 4 HOH A 20 321 42 HOH HOH . 
G 4 HOH A 21 322 47 HOH HOH . 
G 4 HOH A 22 323 48 HOH HOH . 
G 4 HOH A 23 324 50 HOH HOH . 
G 4 HOH A 24 325 53 HOH HOH . 
G 4 HOH A 25 326 54 HOH HOH . 
G 4 HOH A 26 327 55 HOH HOH . 
G 4 HOH A 27 328 56 HOH HOH . 
G 4 HOH A 28 329 57 HOH HOH . 
G 4 HOH A 29 330 58 HOH HOH . 
G 4 HOH A 30 331 66 HOH HOH . 
G 4 HOH A 31 332 67 HOH HOH . 
G 4 HOH A 32 333 68 HOH HOH . 
G 4 HOH A 33 334 70 HOH HOH . 
G 4 HOH A 34 335 71 HOH HOH . 
G 4 HOH A 35 336 76 HOH HOH . 
G 4 HOH A 36 337 77 HOH HOH . 
G 4 HOH A 37 338 79 HOH HOH . 
G 4 HOH A 38 339 87 HOH HOH . 
G 4 HOH A 39 340 89 HOH HOH . 
G 4 HOH A 40 341 91 HOH HOH . 
G 4 HOH A 41 342 92 HOH HOH . 
G 4 HOH A 42 343 95 HOH HOH . 
G 4 HOH A 43 344 96 HOH HOH . 
G 4 HOH A 44 345 97 HOH HOH . 
G 4 HOH A 45 346 101 HOH HOH . 
G 4 HOH A 46 347 104 HOH HOH . 
G 4 HOH A 47 348 107 HOH HOH . 
G 4 HOH A 48 349 110 HOH HOH . 
G 4 HOH A 49 350 113 HOH HOH . 
G 4 HOH A 50 351 115 HOH HOH . 
G 4 HOH A 51 352 117 HOH HOH . 
G 4 HOH A 52 353 118 HOH HOH . 
G 4 HOH A 53 354 119 HOH HOH . 
G 4 HOH A 54 355 121 HOH HOH . 
G 4 HOH A 55 356 126 HOH HOH . 
G 4 HOH A 56 357 128 HOH HOH . 
G 4 HOH A 57 358 130 HOH HOH . 
G 4 HOH A 58 359 132 HOH HOH . 
G 4 HOH A 59 360 133 HOH HOH . 
G 4 HOH A 60 361 134 HOH HOH . 
G 4 HOH A 61 362 135 HOH HOH . 
G 4 HOH A 62 363 136 HOH HOH . 
G 4 HOH A 63 364 139 HOH HOH . 
G 4 HOH A 64 365 140 HOH HOH . 
G 4 HOH A 65 366 141 HOH HOH . 
G 4 HOH A 66 367 142 HOH HOH . 
G 4 HOH A 67 368 143 HOH HOH . 
G 4 HOH A 68 369 144 HOH HOH . 
G 4 HOH A 69 370 145 HOH HOH . 
G 4 HOH A 70 371 147 HOH HOH . 
G 4 HOH A 71 372 148 HOH HOH . 
G 4 HOH A 72 373 149 HOH HOH . 
G 4 HOH A 73 374 150 HOH HOH . 
G 4 HOH A 74 375 153 HOH HOH . 
G 4 HOH A 75 376 154 HOH HOH . 
G 4 HOH A 76 377 159 HOH HOH . 
G 4 HOH A 77 378 161 HOH HOH . 
G 4 HOH A 78 379 164 HOH HOH . 
G 4 HOH A 79 380 168 HOH HOH . 
G 4 HOH A 80 381 169 HOH HOH . 
G 4 HOH A 81 382 170 HOH HOH . 
G 4 HOH A 82 383 175 HOH HOH . 
G 4 HOH A 83 384 177 HOH HOH . 
G 4 HOH A 84 385 179 HOH HOH . 
G 4 HOH A 85 386 182 HOH HOH . 
H 4 HOH B 1 303 1 HOH HOH . 
H 4 HOH B 2 304 2 HOH HOH . 
H 4 HOH B 3 305 4 HOH HOH . 
H 4 HOH B 4 306 5 HOH HOH . 
H 4 HOH B 5 307 6 HOH HOH . 
H 4 HOH B 6 308 9 HOH HOH . 
H 4 HOH B 7 309 10 HOH HOH . 
H 4 HOH B 8 310 13 HOH HOH . 
H 4 HOH B 9 311 15 HOH HOH . 
H 4 HOH B 10 312 16 HOH HOH . 
H 4 HOH B 11 313 18 HOH HOH . 
H 4 HOH B 12 314 21 HOH HOH . 
H 4 HOH B 13 315 22 HOH HOH . 
H 4 HOH B 14 316 26 HOH HOH . 
H 4 HOH B 15 317 28 HOH HOH . 
H 4 HOH B 16 318 29 HOH HOH . 
H 4 HOH B 17 319 30 HOH HOH . 
H 4 HOH B 18 320 31 HOH HOH . 
H 4 HOH B 19 321 33 HOH HOH . 
H 4 HOH B 20 322 35 HOH HOH . 
H 4 HOH B 21 323 37 HOH HOH . 
H 4 HOH B 22 324 38 HOH HOH . 
H 4 HOH B 23 325 43 HOH HOH . 
H 4 HOH B 24 326 44 HOH HOH . 
H 4 HOH B 25 327 45 HOH HOH . 
H 4 HOH B 26 328 46 HOH HOH . 
H 4 HOH B 27 329 49 HOH HOH . 
H 4 HOH B 28 330 51 HOH HOH . 
H 4 HOH B 29 331 52 HOH HOH . 
H 4 HOH B 30 332 59 HOH HOH . 
H 4 HOH B 31 333 60 HOH HOH . 
H 4 HOH B 32 334 61 HOH HOH . 
H 4 HOH B 33 335 62 HOH HOH . 
H 4 HOH B 34 336 63 HOH HOH . 
H 4 HOH B 35 337 64 HOH HOH . 
H 4 HOH B 36 338 65 HOH HOH . 
H 4 HOH B 37 339 69 HOH HOH . 
H 4 HOH B 38 340 72 HOH HOH . 
H 4 HOH B 39 341 73 HOH HOH . 
H 4 HOH B 40 342 74 HOH HOH . 
H 4 HOH B 41 343 75 HOH HOH . 
H 4 HOH B 42 344 78 HOH HOH . 
H 4 HOH B 43 345 80 HOH HOH . 
H 4 HOH B 44 346 81 HOH HOH . 
H 4 HOH B 45 347 82 HOH HOH . 
H 4 HOH B 46 348 83 HOH HOH . 
H 4 HOH B 47 349 84 HOH HOH . 
H 4 HOH B 48 350 85 HOH HOH . 
H 4 HOH B 49 351 86 HOH HOH . 
H 4 HOH B 50 352 88 HOH HOH . 
H 4 HOH B 51 353 90 HOH HOH . 
H 4 HOH B 52 354 93 HOH HOH . 
H 4 HOH B 53 355 94 HOH HOH . 
H 4 HOH B 54 356 98 HOH HOH . 
H 4 HOH B 55 357 99 HOH HOH . 
H 4 HOH B 56 358 100 HOH HOH . 
H 4 HOH B 57 359 102 HOH HOH . 
H 4 HOH B 58 360 103 HOH HOH . 
H 4 HOH B 59 361 105 HOH HOH . 
H 4 HOH B 60 362 106 HOH HOH . 
H 4 HOH B 61 363 108 HOH HOH . 
H 4 HOH B 62 364 109 HOH HOH . 
H 4 HOH B 63 365 111 HOH HOH . 
H 4 HOH B 64 366 112 HOH HOH . 
H 4 HOH B 65 367 114 HOH HOH . 
H 4 HOH B 66 368 116 HOH HOH . 
H 4 HOH B 67 369 120 HOH HOH . 
H 4 HOH B 68 370 122 HOH HOH . 
H 4 HOH B 69 371 123 HOH HOH . 
H 4 HOH B 70 372 124 HOH HOH . 
H 4 HOH B 71 373 125 HOH HOH . 
H 4 HOH B 72 374 127 HOH HOH . 
H 4 HOH B 73 375 129 HOH HOH . 
H 4 HOH B 74 376 131 HOH HOH . 
H 4 HOH B 75 377 137 HOH HOH . 
H 4 HOH B 76 378 138 HOH HOH . 
H 4 HOH B 77 379 146 HOH HOH . 
H 4 HOH B 78 380 151 HOH HOH . 
H 4 HOH B 79 381 152 HOH HOH . 
H 4 HOH B 80 382 155 HOH HOH . 
H 4 HOH B 81 383 156 HOH HOH . 
H 4 HOH B 82 384 157 HOH HOH . 
H 4 HOH B 83 385 158 HOH HOH . 
H 4 HOH B 84 386 160 HOH HOH . 
H 4 HOH B 85 387 162 HOH HOH . 
H 4 HOH B 86 388 163 HOH HOH . 
H 4 HOH B 87 389 165 HOH HOH . 
H 4 HOH B 88 390 166 HOH HOH . 
H 4 HOH B 89 391 167 HOH HOH . 
H 4 HOH B 90 392 171 HOH HOH . 
H 4 HOH B 91 393 172 HOH HOH . 
H 4 HOH B 92 394 173 HOH HOH . 
H 4 HOH B 93 395 174 HOH HOH . 
H 4 HOH B 94 396 176 HOH HOH . 
H 4 HOH B 95 397 178 HOH HOH . 
H 4 HOH B 96 398 180 HOH HOH . 
H 4 HOH B 97 399 181 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO2 . . . D 3 0 0 26.401 0.33 33.95 ? S SO2 301 A 1 
HETATM 2 O O1 SO2 . . . D 3 0 0 27.821 0.33 33.25 ? O1 SO2 301 A 1 
HETATM 3 O O2 SO2 . . . D 3 -0.831 -0.987 25.922 0.33 33.19 ? O2 SO2 301 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           3 
#