data_1EKO # _model_server_result.job_id LBh-JXK1Q88JQ9hC0B_ocg _model_server_result.datetime_utc '2024-11-26 10:57:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1eko # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":318}' # _entry.id 1EKO # _exptl.entry_id 1EKO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1EKO _cell.length_a 68.81 _cell.length_b 68.81 _cell.length_c 154.77 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EKO _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id AYA _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id AYA _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id SER _struct_conn.ptnr2_label_seq_id 2 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id SER _struct_conn.ptnr2_auth_seq_id 2 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.33 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 304 n n PA O2A NAP sing 305 n n PA O5B NAP sing 306 n n PA O3 NAP sing 307 n n O2A HOA2 NAP sing 308 n n O5B C5B NAP sing 309 n n C5B C4B NAP sing 310 n n C5B H51A NAP sing 311 n n C5B H52A NAP sing 312 n n C4B O4B NAP sing 313 n n C4B C3B NAP sing 314 n n C4B H4B NAP sing 315 n n O4B C1B NAP sing 316 n n C3B O3B NAP sing 317 n n C3B C2B NAP sing 318 n n C3B H3B NAP sing 319 n n O3B HO3A NAP sing 320 n n C2B O2B NAP sing 321 n n C2B C1B NAP sing 322 n n C2B H2B NAP sing 323 n n O2B P2B NAP sing 324 n n C1B N9A NAP sing 325 n n C1B H1B NAP sing 326 n n N9A C8A NAP sing 327 n y N9A C4A NAP sing 328 n y C8A N7A NAP doub 329 n y C8A H8A NAP sing 330 n n N7A C5A NAP sing 331 n y C5A C6A NAP sing 332 n y C5A C4A NAP doub 333 n y C6A N6A NAP sing 334 n n C6A N1A NAP doub 335 n y N6A H61A NAP sing 336 n n N6A H62A NAP sing 337 n n N1A C2A NAP sing 338 n y C2A N3A NAP doub 339 n y C2A H2A NAP sing 340 n n N3A C4A NAP sing 341 n y O3 PN NAP sing 342 n n PN O1N NAP doub 343 n n PN O2N NAP sing 344 n n PN O5D NAP sing 345 n n O5D C5D NAP sing 346 n n C5D C4D NAP sing 347 n n C5D H51N NAP sing 348 n n C5D H52N NAP sing 349 n n C4D O4D NAP sing 350 n n C4D C3D NAP sing 351 n n C4D H4D NAP sing 352 n n O4D C1D NAP sing 353 n n C3D O3D NAP sing 354 n n C3D C2D NAP sing 355 n n C3D H3D NAP sing 356 n n O3D HO3N NAP sing 357 n n C2D O2D NAP sing 358 n n C2D C1D NAP sing 359 n n C2D H2D NAP sing 360 n n O2D HO2N NAP sing 361 n n C1D N1N NAP sing 362 n n C1D H1D NAP sing 363 n n N1N C2N NAP sing 364 n y N1N C6N NAP doub 365 n y C2N C3N NAP doub 366 n y C2N H2N NAP sing 367 n n C3N C7N NAP sing 368 n n C3N C4N NAP sing 369 n y C7N O7N NAP doub 370 n n C7N N7N NAP sing 371 n n N7N H71N NAP sing 372 n n N7N H72N NAP sing 373 n n C4N C5N NAP doub 374 n y C4N H4N NAP sing 375 n n C5N C6N NAP sing 376 n y C5N H5N NAP sing 377 n n C6N H6N NAP sing 378 n n P2B O1X NAP doub 379 n n P2B O2X NAP sing 380 n n P2B O3X NAP sing 381 n n O2X HOP2 NAP sing 382 n n O3X HOP3 NAP sing 383 n n # _atom_sites.entry_id 1EKO _atom_sites.fract_transf_matrix[1][1] 0.014533 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014533 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006461 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 318 318 NAP NPD . C 3 I84 A 1 320 320 I84 384 . D 4 HOH A 1 501 501 HOH HOH . D 4 HOH A 2 502 502 HOH HOH . D 4 HOH A 3 503 503 HOH HOH . D 4 HOH A 4 504 504 HOH HOH . D 4 HOH A 5 505 505 HOH HOH . D 4 HOH A 6 506 506 HOH HOH . D 4 HOH A 7 507 507 HOH HOH . D 4 HOH A 8 508 508 HOH HOH . D 4 HOH A 9 509 509 HOH HOH . D 4 HOH A 10 510 510 HOH HOH . D 4 HOH A 11 511 511 HOH HOH . D 4 HOH A 12 512 512 HOH HOH . D 4 HOH A 13 513 513 HOH HOH . D 4 HOH A 14 514 514 HOH HOH . D 4 HOH A 15 515 515 HOH HOH . D 4 HOH A 16 516 516 HOH HOH . D 4 HOH A 17 517 517 HOH HOH . D 4 HOH A 18 518 518 HOH HOH . D 4 HOH A 19 519 519 HOH HOH . D 4 HOH A 20 520 520 HOH HOH . D 4 HOH A 21 521 521 HOH HOH . D 4 HOH A 22 522 522 HOH HOH . D 4 HOH A 23 523 523 HOH HOH . D 4 HOH A 24 524 524 HOH HOH . D 4 HOH A 25 525 525 HOH HOH . D 4 HOH A 26 526 526 HOH HOH . D 4 HOH A 27 527 527 HOH HOH . D 4 HOH A 28 528 528 HOH HOH . D 4 HOH A 29 529 529 HOH HOH . D 4 HOH A 30 530 530 HOH HOH . D 4 HOH A 31 531 531 HOH HOH . D 4 HOH A 32 532 532 HOH HOH . D 4 HOH A 33 533 533 HOH HOH . D 4 HOH A 34 534 534 HOH HOH . D 4 HOH A 35 535 535 HOH HOH . D 4 HOH A 36 536 536 HOH HOH . D 4 HOH A 37 537 537 HOH HOH . D 4 HOH A 38 538 538 HOH HOH . D 4 HOH A 39 539 539 HOH HOH . D 4 HOH A 40 540 540 HOH HOH . D 4 HOH A 41 541 541 HOH HOH . D 4 HOH A 42 542 542 HOH HOH . D 4 HOH A 43 543 543 HOH HOH . D 4 HOH A 44 544 544 HOH HOH . D 4 HOH A 45 545 545 HOH HOH . D 4 HOH A 46 546 546 HOH HOH . D 4 HOH A 47 547 547 HOH HOH . D 4 HOH A 48 548 548 HOH HOH . D 4 HOH A 49 549 549 HOH HOH . D 4 HOH A 50 550 550 HOH HOH . D 4 HOH A 51 551 551 HOH HOH . D 4 HOH A 52 552 552 HOH HOH . D 4 HOH A 53 553 553 HOH HOH . D 4 HOH A 54 554 554 HOH HOH . D 4 HOH A 55 555 555 HOH HOH . D 4 HOH A 56 556 556 HOH HOH . D 4 HOH A 57 557 557 HOH HOH . D 4 HOH A 58 558 558 HOH HOH . D 4 HOH A 59 559 559 HOH HOH . D 4 HOH A 60 560 560 HOH HOH . D 4 HOH A 61 561 561 HOH HOH . D 4 HOH A 62 562 562 HOH HOH . D 4 HOH A 63 563 563 HOH HOH . D 4 HOH A 64 564 564 HOH HOH . D 4 HOH A 65 565 565 HOH HOH . D 4 HOH A 66 566 566 HOH HOH . D 4 HOH A 67 567 567 HOH HOH . D 4 HOH A 68 568 568 HOH HOH . D 4 HOH A 69 569 569 HOH HOH . D 4 HOH A 70 570 570 HOH HOH . D 4 HOH A 71 571 571 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 60.373 28.221 95.862 1 45.34 ? PA NAP 318 A 1 HETATM 2 O O1A NAP . . . B 2 60.892 28.401 97.236 1 45.55 ? O1A NAP 318 A 1 HETATM 3 O O2A NAP . . . B 2 58.904 28.254 95.663 1 44.63 ? O2A NAP 318 A 1 HETATM 4 O O5B NAP . . . B 2 60.903 26.814 95.298 1 46.27 ? O5B NAP 318 A 1 HETATM 5 C C5B NAP . . . B 2 60.528 26.324 94.004 1 44.75 ? C5B NAP 318 A 1 HETATM 6 C C4B NAP . . . B 2 60.953 24.869 93.845 1 41.69 ? C4B NAP 318 A 1 HETATM 7 O O4B NAP . . . B 2 60.24 24.046 94.8 1 41.99 ? O4B NAP 318 A 1 HETATM 8 C C3B NAP . . . B 2 60.563 24.37 92.477 1 39.53 ? C3B NAP 318 A 1 HETATM 9 O O3B NAP . . . B 2 61.689 23.809 91.84 1 36.1 ? O3B NAP 318 A 1 HETATM 10 C C2B NAP . . . B 2 59.388 23.427 92.697 1 40.85 ? C2B NAP 318 A 1 HETATM 11 O O2B NAP . . . B 2 59.302 22.352 91.739 1 45.23 ? O2B NAP 318 A 1 HETATM 12 C C1B NAP . . . B 2 59.605 22.935 94.13 1 42.15 ? C1B NAP 318 A 1 HETATM 13 N N9A NAP . . . B 2 58.367 22.528 94.86 1 40.46 ? N9A NAP 318 A 1 HETATM 14 C C8A NAP . . . B 2 57.223 23.231 94.973 1 41.96 ? C8A NAP 318 A 1 HETATM 15 N N7A NAP . . . B 2 56.311 22.625 95.732 1 44.09 ? N7A NAP 318 A 1 HETATM 16 C C5A NAP . . . B 2 56.928 21.521 96.103 1 41.49 ? C5A NAP 318 A 1 HETATM 17 C C6A NAP . . . B 2 56.393 20.534 96.937 1 40.42 ? C6A NAP 318 A 1 HETATM 18 N N6A NAP . . . B 2 55.165 20.65 97.455 1 35.68 ? N6A NAP 318 A 1 HETATM 19 N N1A NAP . . . B 2 57.207 19.472 97.209 1 41.96 ? N1A NAP 318 A 1 HETATM 20 C C2A NAP . . . B 2 58.458 19.352 96.728 1 41.8 ? C2A NAP 318 A 1 HETATM 21 N N3A NAP . . . B 2 58.94 20.319 95.923 1 45.22 ? N3A NAP 318 A 1 HETATM 22 C C4A NAP . . . B 2 58.209 21.419 95.585 1 42.48 ? C4A NAP 318 A 1 HETATM 23 O O3 NAP . . . B 2 61.288 29.153 94.914 1 42.42 ? O3 NAP 318 A 1 HETATM 24 P PN NAP . . . B 2 61.249 30.484 94.022 1 41.42 ? PN NAP 318 A 1 HETATM 25 O O1N NAP . . . B 2 60.757 30.123 92.669 1 38.33 ? O1N NAP 318 A 1 HETATM 26 O O2N NAP . . . B 2 62.56 31.156 94.103 1 38.63 ? O2N NAP 318 A 1 HETATM 27 O O5D NAP . . . B 2 60.207 31.354 94.9 1 39.03 ? O5D NAP 318 A 1 HETATM 28 C C5D NAP . . . B 2 58.778 31.304 94.732 1 36.46 ? C5D NAP 318 A 1 HETATM 29 C C4D NAP . . . B 2 58.186 32.507 94.02 1 38.43 ? C4D NAP 318 A 1 HETATM 30 O O4D NAP . . . B 2 58.625 33.649 94.794 1 37.18 ? O4D NAP 318 A 1 HETATM 31 C C3D NAP . . . B 2 58.675 32.751 92.587 1 35.69 ? C3D NAP 318 A 1 HETATM 32 O O3D NAP . . . B 2 58.21 31.957 91.495 1 40.84 ? O3D NAP 318 A 1 HETATM 33 C C2D NAP . . . B 2 58.5 34.25 92.496 1 33.86 ? C2D NAP 318 A 1 HETATM 34 O O2D NAP . . . B 2 57.142 34.59 92.142 1 28.56 ? O2D NAP 318 A 1 HETATM 35 C C1D NAP . . . B 2 58.932 34.72 93.895 1 35.5 ? C1D NAP 318 A 1 HETATM 36 N N1N NAP . . . B 2 60.303 35.311 94.054 1 35.8 ? N1N NAP 318 A 1 HETATM 37 C C2N NAP . . . B 2 60.31 36.732 94.121 1 35.41 ? C2N NAP 318 A 1 HETATM 38 C C3N NAP . . . B 2 61.524 37.407 94.337 1 32.74 ? C3N NAP 318 A 1 HETATM 39 C C7N NAP . . . B 2 61.652 38.944 94.33 1 33.41 ? C7N NAP 318 A 1 HETATM 40 O O7N NAP . . . B 2 62.746 39.447 94.053 1 34.34 ? O7N NAP 318 A 1 HETATM 41 N N7N NAP . . . B 2 60.548 39.67 94.567 1 28.86 ? N7N NAP 318 A 1 HETATM 42 C C4N NAP . . . B 2 62.696 36.599 94.428 1 36.83 ? C4N NAP 318 A 1 HETATM 43 C C5N NAP . . . B 2 62.766 35.198 94.301 1 31.29 ? C5N NAP 318 A 1 HETATM 44 C C6N NAP . . . B 2 61.541 34.571 94.164 1 33.28 ? C6N NAP 318 A 1 HETATM 45 P P2B NAP . . . B 2 58.419 22.321 90.38 1 44.46 ? P2B NAP 318 A 1 HETATM 46 O O1X NAP . . . B 2 59.325 21.663 89.415 1 42.86 ? O1X NAP 318 A 1 HETATM 47 O O2X NAP . . . B 2 57.251 21.524 90.836 1 39.94 ? O2X NAP 318 A 1 HETATM 48 O O3X NAP . . . B 2 58.119 23.718 90 1 44.16 ? O3X NAP 318 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 48 #