data_1ELW # _model_server_result.job_id TXW57ZMZFJErZEu_q4IMjg _model_server_result.datetime_utc '2024-12-24 00:37:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1elw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":402}' # _entry.id 1ELW # _exptl.entry_id 1ELW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ELW _cell.length_a 75.47 _cell.length_b 75.47 _cell.length_c 42.89 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ELW _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,M,O 1 1 B,D,I,J,K,L,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 36 A HIS 36 1_555 F NI NI . A NI 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc2 A NE2 HIS 101 A HIS 101 1_555 E NI NI . A NI 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc3 G O3 TRS . A TRS 301 1_555 E NI NI . A NI 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc4 G N TRS . A TRS 301 1_555 E NI NI . A NI 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc5 H N TRS . A TRS 302 1_555 E NI NI . A NI 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc6 H O2 TRS . A TRS 302 1_555 E NI NI . A NI 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc7 H O3 TRS . A TRS 302 1_555 E NI NI . A NI 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc8 B NE2 HIS 36 B HIS 36 1_555 J NI NI . B NI 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc9 B NE2 HIS 101 B HIS 101 1_555 I NI NI . B NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc10 K N TRS . B TRS 303 1_555 I NI NI . B NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc11 K O1 TRS . B TRS 303 1_555 I NI NI . B NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc12 K O2 TRS . B TRS 303 1_555 I NI NI . B NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc13 L N TRS . B TRS 304 1_555 I NI NI . B NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc14 L O3 TRS . B TRS 304 1_555 I NI NI . B NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc15 J NI NI . B NI 404 1_555 N O HOH . B HOH 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1ELW _atom_sites.fract_transf_matrix[1][1] 0.01325 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01325 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023315 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NI A 1 402 2 NI NI . F 3 NI A 1 403 3 NI NI . G 4 TRS A 1 301 1 TRS TRS . H 4 TRS A 1 302 1 TRS TRS . I 3 NI B 1 401 1 NI NI . J 3 NI B 1 404 4 NI NI . K 4 TRS B 1 303 1 TRS TRS . L 4 TRS B 1 304 1 TRS TRS . M 5 HOH A 1 404 1 HOH HOH . M 5 HOH A 2 405 2 HOH HOH . M 5 HOH A 3 406 7 HOH HOH . M 5 HOH A 4 407 8 HOH HOH . M 5 HOH A 5 408 13 HOH HOH . M 5 HOH A 6 409 15 HOH HOH . M 5 HOH A 7 410 16 HOH HOH . M 5 HOH A 8 411 17 HOH HOH . M 5 HOH A 9 412 20 HOH HOH . M 5 HOH A 10 413 22 HOH HOH . M 5 HOH A 11 414 23 HOH HOH . M 5 HOH A 12 415 26 HOH HOH . M 5 HOH A 13 416 29 HOH HOH . M 5 HOH A 14 417 30 HOH HOH . M 5 HOH A 15 418 31 HOH HOH . M 5 HOH A 16 419 32 HOH HOH . M 5 HOH A 17 420 33 HOH HOH . M 5 HOH A 18 421 34 HOH HOH . M 5 HOH A 19 422 35 HOH HOH . M 5 HOH A 20 423 38 HOH HOH . M 5 HOH A 21 424 39 HOH HOH . M 5 HOH A 22 425 40 HOH HOH . M 5 HOH A 23 426 42 HOH HOH . M 5 HOH A 24 427 45 HOH HOH . M 5 HOH A 25 428 48 HOH HOH . M 5 HOH A 26 429 51 HOH HOH . M 5 HOH A 27 430 57 HOH HOH . M 5 HOH A 28 431 58 HOH HOH . M 5 HOH A 29 432 59 HOH HOH . M 5 HOH A 30 433 60 HOH HOH . M 5 HOH A 31 434 61 HOH HOH . M 5 HOH A 32 435 65 HOH HOH . M 5 HOH A 33 436 66 HOH HOH . M 5 HOH A 34 437 67 HOH HOH . M 5 HOH A 35 438 68 HOH HOH . M 5 HOH A 36 439 69 HOH HOH . M 5 HOH A 37 440 76 HOH HOH . M 5 HOH A 38 441 79 HOH HOH . M 5 HOH A 39 442 85 HOH HOH . M 5 HOH A 40 443 90 HOH HOH . M 5 HOH A 41 444 94 HOH HOH . M 5 HOH A 42 445 96 HOH HOH . M 5 HOH A 43 446 97 HOH HOH . M 5 HOH A 44 447 98 HOH HOH . M 5 HOH A 45 448 100 HOH HOH . M 5 HOH A 46 449 102 HOH HOH . M 5 HOH A 47 450 103 HOH HOH . M 5 HOH A 48 451 105 HOH HOH . M 5 HOH A 49 452 106 HOH HOH . M 5 HOH A 50 453 108 HOH HOH . M 5 HOH A 51 454 111 HOH HOH . M 5 HOH A 52 455 114 HOH HOH . M 5 HOH A 53 456 117 HOH HOH . M 5 HOH A 54 457 118 HOH HOH . M 5 HOH A 55 458 120 HOH HOH . M 5 HOH A 56 459 123 HOH HOH . M 5 HOH A 57 460 124 HOH HOH . M 5 HOH A 58 461 127 HOH HOH . M 5 HOH A 59 462 128 HOH HOH . M 5 HOH A 60 463 129 HOH HOH . M 5 HOH A 61 464 131 HOH HOH . M 5 HOH A 62 465 132 HOH HOH . M 5 HOH A 63 466 133 HOH HOH . M 5 HOH A 64 467 135 HOH HOH . M 5 HOH A 65 468 137 HOH HOH . M 5 HOH A 66 469 138 HOH HOH . M 5 HOH A 67 470 142 HOH HOH . M 5 HOH A 68 471 143 HOH HOH . M 5 HOH A 69 472 145 HOH HOH . M 5 HOH A 70 473 146 HOH HOH . M 5 HOH A 71 474 148 HOH HOH . M 5 HOH A 72 475 149 HOH HOH . M 5 HOH A 73 476 150 HOH HOH . M 5 HOH A 74 477 152 HOH HOH . M 5 HOH A 75 478 154 HOH HOH . M 5 HOH A 76 479 155 HOH HOH . M 5 HOH A 77 480 157 HOH HOH . M 5 HOH A 78 481 158 HOH HOH . M 5 HOH A 79 482 160 HOH HOH . M 5 HOH A 80 483 161 HOH HOH . M 5 HOH A 81 484 163 HOH HOH . M 5 HOH A 82 485 165 HOH HOH . M 5 HOH A 83 486 168 HOH HOH . M 5 HOH A 84 487 169 HOH HOH . M 5 HOH A 85 488 171 HOH HOH . M 5 HOH A 86 489 173 HOH HOH . M 5 HOH A 87 490 178 HOH HOH . M 5 HOH A 88 491 182 HOH HOH . M 5 HOH A 89 492 184 HOH HOH . M 5 HOH A 90 493 185 HOH HOH . M 5 HOH A 91 494 188 HOH HOH . M 5 HOH A 92 495 189 HOH HOH . M 5 HOH A 93 496 192 HOH HOH . M 5 HOH A 94 497 193 HOH HOH . M 5 HOH A 95 498 195 HOH HOH . M 5 HOH A 96 499 196 HOH HOH . M 5 HOH A 97 500 197 HOH HOH . M 5 HOH A 98 501 200 HOH HOH . M 5 HOH A 99 502 201 HOH HOH . M 5 HOH A 100 503 202 HOH HOH . M 5 HOH A 101 504 205 HOH HOH . M 5 HOH A 102 505 206 HOH HOH . M 5 HOH A 103 506 207 HOH HOH . M 5 HOH A 104 507 211 HOH HOH . M 5 HOH A 105 508 212 HOH HOH . M 5 HOH A 106 509 213 HOH HOH . M 5 HOH A 107 510 215 HOH HOH . M 5 HOH A 108 511 218 HOH HOH . M 5 HOH A 109 512 220 HOH HOH . M 5 HOH A 110 513 221 HOH HOH . M 5 HOH A 111 514 223 HOH HOH . M 5 HOH A 112 515 227 HOH HOH . M 5 HOH A 113 516 234 HOH HOH . M 5 HOH A 114 517 236 HOH HOH . M 5 HOH A 115 518 238 HOH HOH . M 5 HOH A 116 519 242 HOH HOH . N 5 HOH B 1 405 4 HOH HOH . N 5 HOH B 2 406 9 HOH HOH . N 5 HOH B 3 407 10 HOH HOH . N 5 HOH B 4 408 11 HOH HOH . N 5 HOH B 5 409 12 HOH HOH . N 5 HOH B 6 410 14 HOH HOH . N 5 HOH B 7 411 18 HOH HOH . N 5 HOH B 8 412 19 HOH HOH . N 5 HOH B 9 413 21 HOH HOH . N 5 HOH B 10 414 24 HOH HOH . N 5 HOH B 11 415 25 HOH HOH . N 5 HOH B 12 416 27 HOH HOH . N 5 HOH B 13 417 28 HOH HOH . N 5 HOH B 14 418 36 HOH HOH . N 5 HOH B 15 419 41 HOH HOH . N 5 HOH B 16 420 43 HOH HOH . N 5 HOH B 17 421 44 HOH HOH . N 5 HOH B 18 422 46 HOH HOH . N 5 HOH B 19 423 47 HOH HOH . N 5 HOH B 20 424 49 HOH HOH . N 5 HOH B 21 425 50 HOH HOH . N 5 HOH B 22 426 52 HOH HOH . N 5 HOH B 23 427 53 HOH HOH . N 5 HOH B 24 428 54 HOH HOH . N 5 HOH B 25 429 55 HOH HOH . N 5 HOH B 26 430 63 HOH HOH . N 5 HOH B 27 431 64 HOH HOH . N 5 HOH B 28 432 70 HOH HOH . N 5 HOH B 29 433 72 HOH HOH . N 5 HOH B 30 434 73 HOH HOH . N 5 HOH B 31 435 75 HOH HOH . N 5 HOH B 32 436 78 HOH HOH . N 5 HOH B 33 437 80 HOH HOH . N 5 HOH B 34 438 81 HOH HOH . N 5 HOH B 35 439 82 HOH HOH . N 5 HOH B 36 440 83 HOH HOH . N 5 HOH B 37 441 84 HOH HOH . N 5 HOH B 38 442 87 HOH HOH . N 5 HOH B 39 443 88 HOH HOH . N 5 HOH B 40 444 89 HOH HOH . N 5 HOH B 41 445 91 HOH HOH . N 5 HOH B 42 446 93 HOH HOH . N 5 HOH B 43 447 99 HOH HOH . N 5 HOH B 44 448 101 HOH HOH . N 5 HOH B 45 449 109 HOH HOH . N 5 HOH B 46 450 110 HOH HOH . N 5 HOH B 47 451 116 HOH HOH . N 5 HOH B 48 452 119 HOH HOH . N 5 HOH B 49 453 121 HOH HOH . N 5 HOH B 50 454 122 HOH HOH . N 5 HOH B 51 455 126 HOH HOH . N 5 HOH B 52 456 130 HOH HOH . N 5 HOH B 53 457 136 HOH HOH . N 5 HOH B 54 458 139 HOH HOH . N 5 HOH B 55 459 140 HOH HOH . N 5 HOH B 56 460 141 HOH HOH . N 5 HOH B 57 461 144 HOH HOH . N 5 HOH B 58 462 151 HOH HOH . N 5 HOH B 59 463 153 HOH HOH . N 5 HOH B 60 464 156 HOH HOH . N 5 HOH B 61 465 159 HOH HOH . N 5 HOH B 62 466 162 HOH HOH . N 5 HOH B 63 467 164 HOH HOH . N 5 HOH B 64 468 166 HOH HOH . N 5 HOH B 65 469 167 HOH HOH . N 5 HOH B 66 470 172 HOH HOH . N 5 HOH B 67 471 174 HOH HOH . N 5 HOH B 68 472 175 HOH HOH . N 5 HOH B 69 473 176 HOH HOH . N 5 HOH B 70 474 179 HOH HOH . N 5 HOH B 71 475 180 HOH HOH . N 5 HOH B 72 476 181 HOH HOH . N 5 HOH B 73 477 183 HOH HOH . N 5 HOH B 74 478 186 HOH HOH . N 5 HOH B 75 479 187 HOH HOH . N 5 HOH B 76 480 190 HOH HOH . N 5 HOH B 77 481 191 HOH HOH . N 5 HOH B 78 482 194 HOH HOH . N 5 HOH B 79 483 198 HOH HOH . N 5 HOH B 80 484 199 HOH HOH . N 5 HOH B 81 485 203 HOH HOH . N 5 HOH B 82 486 204 HOH HOH . N 5 HOH B 83 487 208 HOH HOH . N 5 HOH B 84 488 210 HOH HOH . N 5 HOH B 85 489 214 HOH HOH . N 5 HOH B 86 490 216 HOH HOH . N 5 HOH B 87 491 217 HOH HOH . N 5 HOH B 88 492 219 HOH HOH . N 5 HOH B 89 493 222 HOH HOH . N 5 HOH B 90 494 224 HOH HOH . N 5 HOH B 91 495 225 HOH HOH . N 5 HOH B 92 496 226 HOH HOH . N 5 HOH B 93 497 228 HOH HOH . N 5 HOH B 94 498 229 HOH HOH . N 5 HOH B 95 499 230 HOH HOH . N 5 HOH B 96 500 231 HOH HOH . N 5 HOH B 97 501 232 HOH HOH . N 5 HOH B 98 502 233 HOH HOH . N 5 HOH B 99 503 235 HOH HOH . N 5 HOH B 100 504 237 HOH HOH . N 5 HOH B 101 505 239 HOH HOH . N 5 HOH B 102 506 240 HOH HOH . N 5 HOH B 103 507 241 HOH HOH . N 5 HOH B 104 508 243 HOH HOH . N 5 HOH B 105 509 244 HOH HOH . O 5 HOH C 1 13 5 HOH HOH . O 5 HOH C 2 14 6 HOH HOH . O 5 HOH C 3 15 37 HOH HOH . O 5 HOH C 4 16 62 HOH HOH . O 5 HOH C 5 17 71 HOH HOH . O 5 HOH C 6 18 77 HOH HOH . O 5 HOH C 7 19 86 HOH HOH . O 5 HOH C 8 20 92 HOH HOH . O 5 HOH C 9 21 104 HOH HOH . O 5 HOH C 10 22 107 HOH HOH . O 5 HOH C 11 23 125 HOH HOH . O 5 HOH C 12 24 147 HOH HOH . O 5 HOH C 13 25 177 HOH HOH . P 5 HOH D 1 3 3 HOH HOH . P 5 HOH D 2 56 56 HOH HOH . P 5 HOH D 3 74 74 HOH HOH . P 5 HOH D 4 95 95 HOH HOH . P 5 HOH D 5 112 112 HOH HOH . P 5 HOH D 6 113 113 HOH HOH . P 5 HOH D 7 115 115 HOH HOH . P 5 HOH D 8 134 134 HOH HOH . P 5 HOH D 9 170 170 HOH HOH . P 5 HOH D 10 209 209 HOH HOH . P 5 HOH D 11 245 245 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 53.108 _atom_site.Cartn_y 62.432 _atom_site.Cartn_z 9.501 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 15.51 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #