data_1EMD # _model_server_result.job_id awEAw7AFAbnnkFHeP9_Ppg _model_server_result.datetime_utc '2025-07-30 22:01:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1emd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":313}' # _entry.id 1EMD # _exptl.entry_id 1EMD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 130.1 _cell.angle_gamma 90 _cell.entry_id 1EMD _cell.length_a 116.8 _cell.length_b 43.05 _cell.length_c 83.74 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EMD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 1EMD _atom_sites.fract_transf_matrix[1][1] 0.008562 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00721 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023229 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015612 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 313 313 CIT CIT . C 3 NAD A 1 314 314 NAD NAD . D 4 HOH A 1 315 315 HOH HOH . D 4 HOH A 2 316 316 HOH HOH . D 4 HOH A 3 317 317 HOH HOH . D 4 HOH A 4 318 318 HOH HOH . D 4 HOH A 5 319 319 HOH HOH . D 4 HOH A 6 320 320 HOH HOH . D 4 HOH A 7 321 321 HOH HOH . D 4 HOH A 8 322 322 HOH HOH . D 4 HOH A 9 323 323 HOH HOH . D 4 HOH A 10 324 324 HOH HOH . D 4 HOH A 11 325 325 HOH HOH . D 4 HOH A 12 326 326 HOH HOH . D 4 HOH A 13 327 327 HOH HOH . D 4 HOH A 14 328 328 HOH HOH . D 4 HOH A 15 329 329 HOH HOH . D 4 HOH A 16 330 330 HOH HOH . D 4 HOH A 17 331 331 HOH HOH . D 4 HOH A 18 332 332 HOH HOH . D 4 HOH A 19 333 333 HOH HOH . D 4 HOH A 20 334 334 HOH HOH . D 4 HOH A 21 335 335 HOH HOH . D 4 HOH A 22 336 336 HOH HOH . D 4 HOH A 23 337 337 HOH HOH . D 4 HOH A 24 338 338 HOH HOH . D 4 HOH A 25 339 339 HOH HOH . D 4 HOH A 26 340 340 HOH HOH . D 4 HOH A 27 341 341 HOH HOH . D 4 HOH A 28 342 342 HOH HOH . D 4 HOH A 29 343 343 HOH HOH . D 4 HOH A 30 344 344 HOH HOH . D 4 HOH A 31 345 345 HOH HOH . D 4 HOH A 32 346 346 HOH HOH . D 4 HOH A 33 347 347 HOH HOH . D 4 HOH A 34 348 348 HOH HOH . D 4 HOH A 35 349 349 HOH HOH . D 4 HOH A 36 350 350 HOH HOH . D 4 HOH A 37 351 351 HOH HOH . D 4 HOH A 38 352 352 HOH HOH . D 4 HOH A 39 353 353 HOH HOH . D 4 HOH A 40 354 354 HOH HOH . D 4 HOH A 41 355 355 HOH HOH . D 4 HOH A 42 356 356 HOH HOH . D 4 HOH A 43 357 357 HOH HOH . D 4 HOH A 44 358 358 HOH HOH . D 4 HOH A 45 359 359 HOH HOH . D 4 HOH A 46 360 360 HOH HOH . D 4 HOH A 47 361 361 HOH HOH . D 4 HOH A 48 362 362 HOH HOH . D 4 HOH A 49 363 363 HOH HOH . D 4 HOH A 50 364 364 HOH HOH . D 4 HOH A 51 365 365 HOH HOH . D 4 HOH A 52 366 366 HOH HOH . D 4 HOH A 53 367 367 HOH HOH . D 4 HOH A 54 368 368 HOH HOH . D 4 HOH A 55 369 369 HOH HOH . D 4 HOH A 56 370 370 HOH HOH . D 4 HOH A 57 371 371 HOH HOH . D 4 HOH A 58 372 372 HOH HOH . D 4 HOH A 59 373 373 HOH HOH . D 4 HOH A 60 374 374 HOH HOH . D 4 HOH A 61 375 375 HOH HOH . D 4 HOH A 62 376 376 HOH HOH . D 4 HOH A 63 377 377 HOH HOH . D 4 HOH A 64 378 378 HOH HOH . D 4 HOH A 65 379 379 HOH HOH . D 4 HOH A 66 380 380 HOH HOH . D 4 HOH A 67 381 381 HOH HOH . D 4 HOH A 68 382 382 HOH HOH . D 4 HOH A 69 383 383 HOH HOH . D 4 HOH A 70 384 384 HOH HOH . D 4 HOH A 71 385 385 HOH HOH . D 4 HOH A 72 386 386 HOH HOH . D 4 HOH A 73 387 387 HOH HOH . D 4 HOH A 74 388 388 HOH HOH . D 4 HOH A 75 389 389 HOH HOH . D 4 HOH A 76 390 390 HOH HOH . D 4 HOH A 77 391 391 HOH HOH . D 4 HOH A 78 392 392 HOH HOH . D 4 HOH A 79 393 393 HOH HOH . D 4 HOH A 80 394 394 HOH HOH . D 4 HOH A 81 395 395 HOH HOH . D 4 HOH A 82 396 396 HOH HOH . D 4 HOH A 83 397 397 HOH HOH . D 4 HOH A 84 398 398 HOH HOH . D 4 HOH A 85 399 399 HOH HOH . D 4 HOH A 86 400 400 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . B 2 5.426 -7.608 15.72 1 25.43 ? C1 CIT 313 A 1 HETATM 2 O O1 CIT . . . B 2 4.76 -7.292 16.696 1 22.77 ? O1 CIT 313 A 1 HETATM 3 O O2 CIT . . . B 2 5.71 -8.783 15.47 1 23.22 ? O2 CIT 313 A 1 HETATM 4 C C2 CIT . . . B 2 5.22 -6.691 14.572 1 22.61 ? C2 CIT 313 A 1 HETATM 5 C C3 CIT . . . B 2 5.865 -5.268 14.934 1 23.43 ? C3 CIT 313 A 1 HETATM 6 O O7 CIT . . . B 2 7.15 -5.379 15.668 1 20.35 ? O7 CIT 313 A 1 HETATM 7 C C4 CIT . . . B 2 6.22 -4.401 13.666 1 23.09 ? C4 CIT 313 A 1 HETATM 8 C C5 CIT . . . B 2 6.872 -5.35 12.811 1 31.49 ? C5 CIT 313 A 1 HETATM 9 O O3 CIT . . . B 2 7.741 -6.011 13.344 1 34.43 ? O3 CIT 313 A 1 HETATM 10 O O4 CIT . . . B 2 6.506 -5.733 11.536 1 32.18 ? O4 CIT 313 A 1 HETATM 11 C C6 CIT . . . B 2 4.833 -4.564 15.697 1 21.46 ? C6 CIT 313 A 1 HETATM 12 O O5 CIT . . . B 2 5.262 -3.941 16.722 1 17.15 ? O5 CIT 313 A 1 HETATM 13 O O6 CIT . . . B 2 3.669 -4.64 15.174 1 19.96 ? O6 CIT 313 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #