data_1EMS # _model_server_result.job_id dDYm22GzEDSAxJCiSPEgPA _model_server_result.datetime_utc '2024-10-24 04:23:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ems # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":456}' # _entry.id 1EMS # _exptl.entry_id 1EMS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1EMS _cell.length_a 68.75 _cell.length_b 100.44 _cell.length_c 158.65 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EMS _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 68.75 100.44 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 54 A GLU 54 1_555 C HG EMC . A EMC 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc2 A SG CYS 55 A CYS 55 1_555 D HG EMC . A EMC 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc3 A O CYS 75 A CYS 75 1_555 E HG EMC . A EMC 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc4 A SG CYS 75 A CYS 75 1_555 E HG EMC . A EMC 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc5 A OG SER 167 A SER 167 1_555 G NA NA . A NA 457 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.931 ? metalc ? metalc6 A SG CYS 169 A CYS 169 1_555 C HG EMC . A EMC 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc7 A O ALA 194 A ALA 194 1_555 C HG EMC . A EMC 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.09 ? metalc ? metalc8 A OH TYR 218 A TYR 218 1_555 F NA NA . A NA 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc9 A SG CYS 377 A CYS 377 1_555 H NA NA . A NA 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc10 F NA NA . A NA 456 1_555 M O HOH . A HOH 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? metalc ? metalc11 F NA NA . A NA 456 1_555 B OG SER 252 B SER 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? metalc ? metalc12 G NA NA . A NA 457 1_555 M O HOH . A HOH 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.842 ? metalc ? metalc13 B OE2 GLU 54 B GLU 54 1_555 J HG EMC . B EMC 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc14 B SG CYS 55 B CYS 55 1_555 K HG EMC . B EMC 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc15 B SG CYS 75 B CYS 75 1_555 L NA NA . B NA 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc16 B OE2 GLU 76 B GLU 76 1_555 L NA NA . B NA 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc17 B SG CYS 169 B CYS 169 1_555 J HG EMC . B EMC 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1EMS _atom_sites.fract_transf_matrix[1][1] 0.014545 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009956 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006303 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EMC A 1 451 451 EMC EMC . D 2 EMC A 1 453 453 EMC EMC . E 2 EMC A 1 454 454 EMC EMC . F 3 NA A 1 456 456 NA NA . G 3 NA A 1 457 457 NA NA . H 3 NA A 1 459 459 NA NA . I 4 MPD A 1 502 502 MPD MPD . J 2 EMC B 1 452 452 EMC EMC . K 2 EMC B 1 455 455 EMC EMC . L 3 NA B 1 458 458 NA NA . M 5 HOH A 1 503 2 HOH HOH . M 5 HOH A 2 504 4 HOH HOH . M 5 HOH A 3 505 6 HOH HOH . M 5 HOH A 4 506 10 HOH HOH . M 5 HOH A 5 507 11 HOH HOH . M 5 HOH A 6 508 14 HOH HOH . M 5 HOH A 7 509 15 HOH HOH . M 5 HOH A 8 510 16 HOH HOH . M 5 HOH A 9 511 17 HOH HOH . M 5 HOH A 10 512 18 HOH HOH . M 5 HOH A 11 513 19 HOH HOH . M 5 HOH A 12 514 21 HOH HOH . M 5 HOH A 13 515 23 HOH HOH . M 5 HOH A 14 516 24 HOH HOH . M 5 HOH A 15 517 25 HOH HOH . M 5 HOH A 16 518 27 HOH HOH . M 5 HOH A 17 519 28 HOH HOH . M 5 HOH A 18 520 29 HOH HOH . M 5 HOH A 19 521 30 HOH HOH . M 5 HOH A 20 522 31 HOH HOH . M 5 HOH A 21 523 32 HOH HOH . M 5 HOH A 22 524 33 HOH HOH . M 5 HOH A 23 525 34 HOH HOH . M 5 HOH A 24 526 36 HOH HOH . M 5 HOH A 25 527 37 HOH HOH . M 5 HOH A 26 528 38 HOH HOH . M 5 HOH A 27 529 40 HOH HOH . M 5 HOH A 28 530 41 HOH HOH . M 5 HOH A 29 531 44 HOH HOH . M 5 HOH A 30 532 45 HOH HOH . M 5 HOH A 31 533 48 HOH HOH . M 5 HOH A 32 534 49 HOH HOH . M 5 HOH A 33 535 50 HOH HOH . M 5 HOH A 34 536 51 HOH HOH . M 5 HOH A 35 537 52 HOH HOH . M 5 HOH A 36 538 53 HOH HOH . M 5 HOH A 37 539 58 HOH HOH . M 5 HOH A 38 540 59 HOH HOH . M 5 HOH A 39 541 61 HOH HOH . M 5 HOH A 40 542 65 HOH HOH . M 5 HOH A 41 543 67 HOH HOH . M 5 HOH A 42 544 68 HOH HOH . M 5 HOH A 43 545 69 HOH HOH . M 5 HOH A 44 546 73 HOH HOH . M 5 HOH A 45 547 75 HOH HOH . M 5 HOH A 46 548 80 HOH HOH . M 5 HOH A 47 549 81 HOH HOH . M 5 HOH A 48 550 83 HOH HOH . M 5 HOH A 49 551 85 HOH HOH . M 5 HOH A 50 552 86 HOH HOH . M 5 HOH A 51 553 87 HOH HOH . M 5 HOH A 52 554 89 HOH HOH . M 5 HOH A 53 555 91 HOH HOH . M 5 HOH A 54 556 93 HOH HOH . M 5 HOH A 55 557 94 HOH HOH . M 5 HOH A 56 558 95 HOH HOH . M 5 HOH A 57 559 96 HOH HOH . M 5 HOH A 58 560 97 HOH HOH . M 5 HOH A 59 561 98 HOH HOH . M 5 HOH A 60 562 99 HOH HOH . M 5 HOH A 61 563 100 HOH HOH . M 5 HOH A 62 564 101 HOH HOH . M 5 HOH A 63 565 103 HOH HOH . M 5 HOH A 64 566 105 HOH HOH . M 5 HOH A 65 567 106 HOH HOH . M 5 HOH A 66 568 112 HOH HOH . M 5 HOH A 67 569 113 HOH HOH . M 5 HOH A 68 570 114 HOH HOH . M 5 HOH A 69 571 116 HOH HOH . M 5 HOH A 70 572 117 HOH HOH . M 5 HOH A 71 573 119 HOH HOH . M 5 HOH A 72 574 120 HOH HOH . M 5 HOH A 73 575 121 HOH HOH . M 5 HOH A 74 576 124 HOH HOH . M 5 HOH A 75 577 125 HOH HOH . M 5 HOH A 76 578 126 HOH HOH . M 5 HOH A 77 579 127 HOH HOH . M 5 HOH A 78 580 128 HOH HOH . M 5 HOH A 79 581 129 HOH HOH . M 5 HOH A 80 582 130 HOH HOH . M 5 HOH A 81 583 131 HOH HOH . M 5 HOH A 82 584 132 HOH HOH . M 5 HOH A 83 585 133 HOH HOH . M 5 HOH A 84 586 134 HOH HOH . M 5 HOH A 85 587 135 HOH HOH . M 5 HOH A 86 588 136 HOH HOH . M 5 HOH A 87 589 137 HOH HOH . M 5 HOH A 88 590 138 HOH HOH . M 5 HOH A 89 591 139 HOH HOH . M 5 HOH A 90 592 142 HOH HOH . M 5 HOH A 91 593 147 HOH HOH . M 5 HOH A 92 594 149 HOH HOH . M 5 HOH A 93 595 150 HOH HOH . M 5 HOH A 94 596 152 HOH HOH . M 5 HOH A 95 597 153 HOH HOH . M 5 HOH A 96 598 154 HOH HOH . M 5 HOH A 97 599 155 HOH HOH . M 5 HOH A 98 600 157 HOH HOH . M 5 HOH A 99 601 158 HOH HOH . M 5 HOH A 100 602 159 HOH HOH . N 5 HOH B 1 459 1 HOH HOH . N 5 HOH B 2 460 3 HOH HOH . N 5 HOH B 3 461 5 HOH HOH . N 5 HOH B 4 462 7 HOH HOH . N 5 HOH B 5 463 8 HOH HOH . N 5 HOH B 6 464 9 HOH HOH . N 5 HOH B 7 465 12 HOH HOH . N 5 HOH B 8 466 13 HOH HOH . N 5 HOH B 9 467 20 HOH HOH . N 5 HOH B 10 468 22 HOH HOH . N 5 HOH B 11 469 26 HOH HOH . N 5 HOH B 12 470 35 HOH HOH . N 5 HOH B 13 471 39 HOH HOH . N 5 HOH B 14 472 42 HOH HOH . N 5 HOH B 15 473 43 HOH HOH . N 5 HOH B 16 474 46 HOH HOH . N 5 HOH B 17 475 47 HOH HOH . N 5 HOH B 18 476 54 HOH HOH . N 5 HOH B 19 477 55 HOH HOH . N 5 HOH B 20 478 56 HOH HOH . N 5 HOH B 21 479 57 HOH HOH . N 5 HOH B 22 480 60 HOH HOH . N 5 HOH B 23 481 62 HOH HOH . N 5 HOH B 24 482 63 HOH HOH . N 5 HOH B 25 483 64 HOH HOH . N 5 HOH B 26 484 66 HOH HOH . N 5 HOH B 27 485 70 HOH HOH . N 5 HOH B 28 486 71 HOH HOH . N 5 HOH B 29 487 72 HOH HOH . N 5 HOH B 30 488 74 HOH HOH . N 5 HOH B 31 489 76 HOH HOH . N 5 HOH B 32 490 77 HOH HOH . N 5 HOH B 33 491 78 HOH HOH . N 5 HOH B 34 492 79 HOH HOH . N 5 HOH B 35 493 82 HOH HOH . N 5 HOH B 36 494 84 HOH HOH . N 5 HOH B 37 495 88 HOH HOH . N 5 HOH B 38 496 90 HOH HOH . N 5 HOH B 39 497 92 HOH HOH . N 5 HOH B 40 498 102 HOH HOH . N 5 HOH B 41 499 104 HOH HOH . N 5 HOH B 42 500 107 HOH HOH . N 5 HOH B 43 501 108 HOH HOH . N 5 HOH B 44 502 109 HOH HOH . N 5 HOH B 45 503 110 HOH HOH . N 5 HOH B 46 504 111 HOH HOH . N 5 HOH B 47 505 115 HOH HOH . N 5 HOH B 48 506 118 HOH HOH . N 5 HOH B 49 507 122 HOH HOH . N 5 HOH B 50 508 123 HOH HOH . N 5 HOH B 51 509 140 HOH HOH . N 5 HOH B 52 510 141 HOH HOH . N 5 HOH B 53 511 143 HOH HOH . N 5 HOH B 54 512 144 HOH HOH . N 5 HOH B 55 513 145 HOH HOH . N 5 HOH B 56 514 146 HOH HOH . N 5 HOH B 57 515 148 HOH HOH . N 5 HOH B 58 516 151 HOH HOH . N 5 HOH B 59 517 156 HOH HOH . N 5 HOH B 60 518 160 HOH HOH . N 5 HOH B 61 519 161 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 25.787 _atom_site.Cartn_y 34.812 _atom_site.Cartn_z 33.313 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 16.37 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 456 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #