data_1EMU # _model_server_result.job_id OLt3jr3e9NMR3l1jEsWbzw _model_server_result.datetime_utc '2024-12-01 09:53:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1emu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":505}' # _entry.id 1EMU # _exptl.entry_id 1EMU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1EMU _cell.length_a 30.6 _cell.length_b 69.98 _cell.length_c 71.96 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EMU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 1EMU _atom_sites.fract_transf_matrix[1][1] 0.03268 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01429 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013897 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 501 501 GOL GOL . D 3 GOL A 1 502 502 GOL GOL . E 3 GOL A 1 503 503 GOL GOL . F 3 GOL A 1 504 504 GOL GOL . G 3 GOL A 1 505 505 GOL GOL . H 3 GOL A 1 506 506 GOL GOL . I 3 GOL A 1 507 507 GOL GOL . J 4 HOH A 1 301 301 HOH HOH . J 4 HOH A 2 302 302 HOH HOH . J 4 HOH A 3 303 303 HOH HOH . J 4 HOH A 4 304 304 HOH HOH . J 4 HOH A 5 305 305 HOH HOH . J 4 HOH A 6 306 306 HOH HOH . J 4 HOH A 7 307 307 HOH HOH . J 4 HOH A 8 308 308 HOH HOH . J 4 HOH A 9 309 309 HOH HOH . J 4 HOH A 10 310 310 HOH HOH . J 4 HOH A 11 311 311 HOH HOH . J 4 HOH A 12 312 312 HOH HOH . J 4 HOH A 13 313 313 HOH HOH . J 4 HOH A 14 314 314 HOH HOH . J 4 HOH A 15 315 315 HOH HOH . J 4 HOH A 16 316 316 HOH HOH . J 4 HOH A 17 317 317 HOH HOH . J 4 HOH A 18 318 318 HOH HOH . J 4 HOH A 19 319 319 HOH HOH . J 4 HOH A 20 320 320 HOH HOH . J 4 HOH A 21 321 321 HOH HOH . J 4 HOH A 22 322 322 HOH HOH . J 4 HOH A 23 323 323 HOH HOH . J 4 HOH A 24 324 324 HOH HOH . J 4 HOH A 25 325 325 HOH HOH . J 4 HOH A 26 326 326 HOH HOH . J 4 HOH A 27 328 328 HOH HOH . J 4 HOH A 28 329 329 HOH HOH . J 4 HOH A 29 330 330 HOH HOH . J 4 HOH A 30 331 331 HOH HOH . J 4 HOH A 31 333 333 HOH HOH . J 4 HOH A 32 334 334 HOH HOH . J 4 HOH A 33 335 335 HOH HOH . J 4 HOH A 34 336 336 HOH HOH . J 4 HOH A 35 337 337 HOH HOH . J 4 HOH A 36 338 338 HOH HOH . J 4 HOH A 37 339 339 HOH HOH . J 4 HOH A 38 340 340 HOH HOH . J 4 HOH A 39 342 342 HOH HOH . J 4 HOH A 40 343 343 HOH HOH . J 4 HOH A 41 344 344 HOH HOH . J 4 HOH A 42 345 345 HOH HOH . J 4 HOH A 43 346 346 HOH HOH . J 4 HOH A 44 347 347 HOH HOH . J 4 HOH A 45 348 348 HOH HOH . J 4 HOH A 46 349 349 HOH HOH . J 4 HOH A 47 351 351 HOH HOH . J 4 HOH A 48 352 352 HOH HOH . J 4 HOH A 49 353 353 HOH HOH . J 4 HOH A 50 354 354 HOH HOH . J 4 HOH A 51 356 356 HOH HOH . J 4 HOH A 52 357 357 HOH HOH . J 4 HOH A 53 358 358 HOH HOH . J 4 HOH A 54 359 359 HOH HOH . J 4 HOH A 55 360 360 HOH HOH . J 4 HOH A 56 361 361 HOH HOH . K 4 HOH B 1 327 327 HOH HOH . K 4 HOH B 2 332 332 HOH HOH . K 4 HOH B 3 341 341 HOH HOH . K 4 HOH B 4 350 350 HOH HOH . K 4 HOH B 5 355 355 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 3 22.286 40.388 76.512 1 75.53 ? C1 GOL 505 A 1 HETATM 2 O O1 GOL . . . G 3 21.151 39.662 76.95 1 74.71 ? O1 GOL 505 A 1 HETATM 3 C C2 GOL . . . G 3 21.878 41.685 75.812 1 75.88 ? C2 GOL 505 A 1 HETATM 4 O O2 GOL . . . G 3 21.041 41.379 74.689 1 77.49 ? O2 GOL 505 A 1 HETATM 5 C C3 GOL . . . G 3 23.114 42.449 75.332 1 75.9 ? C3 GOL 505 A 1 HETATM 6 O O3 GOL . . . G 3 23.959 42.786 76.417 1 75.92 ? O3 GOL 505 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 6 #