data_1ENC # _model_server_result.job_id 2PDTvIoqG4MlunMm87D25A _model_server_result.datetime_utc '2024-10-19 17:41:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1enc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":151}' # _entry.id 1ENC # _exptl.entry_id 1ENC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 402.188 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "THYMIDINE-3',5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ENC _cell.length_a 48.05 _cell.length_b 48.05 _cell.length_c 63 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ENC _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 21 A GLU 21 1_555 B CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc2 A OE2 GLU 21 A GLU 21 1_555 B CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc3 A OD1 ASP 40 A ASP 40 1_555 B CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc4 A O THR 41 A THR 41 1_555 B CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.251 ? metalc ? metalc5 A OE2 GLU 43 A GLU 43 1_555 B CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.912 ? metalc ? metalc6 A OE1 GLU 43 A GLU 43 1_555 B CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.375 ? metalc ? metalc7 B CA CA . A CA 150 1_555 C O4P THP . A THP 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? # _chem_comp.formula 'C10 H16 N2 O11 P2' _chem_comp.formula_weight 402.188 _chem_comp.id THP _chem_comp.mon_nstd_flag . _chem_comp.name "THYMIDINE-3',5'-DIPHOSPHATE" _chem_comp.type 'dna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P2 O4P THP doub 277 n n P2 O5P THP sing 278 n n P2 O6P THP sing 279 n n P2 O5' THP sing 280 n n O5P HOP5 THP sing 281 n n O6P HOP6 THP sing 282 n n P1 O1P THP doub 283 n n P1 O2P THP sing 284 n n P1 O3P THP sing 285 n n P1 O3' THP sing 286 n n O2P HOP2 THP sing 287 n n O3P HOP3 THP sing 288 n n O5' C5' THP sing 289 n n C5' C4' THP sing 290 n n C5' "H5'1" THP sing 291 n n C5' "H5'2" THP sing 292 n n C4' O4' THP sing 293 n n C4' C3' THP sing 294 n n C4' H4' THP sing 295 n n O4' C1' THP sing 296 n n C3' O3' THP sing 297 n n C3' C2' THP sing 298 n n C3' H3' THP sing 299 n n C2' C1' THP sing 300 n n C2' "H2'1" THP sing 301 n n C2' "H2'2" THP sing 302 n n C1' N1 THP sing 303 n n C1' H1' THP sing 304 n n N1 C2 THP sing 305 n n N1 C6 THP sing 306 n n C2 O2 THP doub 307 n n C2 N3 THP sing 308 n n N3 C4 THP sing 309 n n N3 H3 THP sing 310 n n C4 O4 THP doub 311 n n C4 C5 THP sing 312 n n C5 C5M THP sing 313 n n C5 C6 THP doub 314 n n C5M H51 THP sing 315 n n C5M H52 THP sing 316 n n C5M H53 THP sing 317 n n C6 H6 THP sing 318 n n # _atom_sites.entry_id 1ENC _atom_sites.fract_transf_matrix[1][1] 0.020812 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020812 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015873 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 150 143 CA CA . C 3 THP A 1 151 142 THP PTP . D 4 HOH A 1 152 144 HOH HOH . D 4 HOH A 2 153 145 HOH HOH . D 4 HOH A 3 154 146 HOH HOH . D 4 HOH A 4 155 147 HOH HOH . D 4 HOH A 5 156 148 HOH HOH . D 4 HOH A 6 157 149 HOH HOH . D 4 HOH A 7 158 150 HOH HOH . D 4 HOH A 8 159 151 HOH HOH . D 4 HOH A 9 160 152 HOH HOH . D 4 HOH A 10 161 153 HOH HOH . D 4 HOH A 11 162 154 HOH HOH . D 4 HOH A 12 163 155 HOH HOH . D 4 HOH A 13 164 156 HOH HOH . D 4 HOH A 14 165 157 HOH HOH . D 4 HOH A 15 166 158 HOH HOH . D 4 HOH A 16 167 159 HOH HOH . D 4 HOH A 17 168 160 HOH HOH . D 4 HOH A 18 169 161 HOH HOH . D 4 HOH A 19 170 162 HOH HOH . D 4 HOH A 20 171 163 HOH HOH . D 4 HOH A 21 172 164 HOH HOH . D 4 HOH A 22 173 165 HOH HOH . D 4 HOH A 23 174 166 HOH HOH . D 4 HOH A 24 175 167 HOH HOH . D 4 HOH A 25 176 168 HOH HOH . D 4 HOH A 26 177 169 HOH HOH . D 4 HOH A 27 178 170 HOH HOH . D 4 HOH A 28 179 171 HOH HOH . D 4 HOH A 29 180 172 HOH HOH . D 4 HOH A 30 181 173 HOH HOH . D 4 HOH A 31 182 174 HOH HOH . D 4 HOH A 32 183 175 HOH HOH . D 4 HOH A 33 184 176 HOH HOH . D 4 HOH A 34 185 177 HOH HOH . D 4 HOH A 35 186 178 HOH HOH . D 4 HOH A 36 187 179 HOH HOH . D 4 HOH A 37 188 180 HOH HOH . D 4 HOH A 38 189 181 HOH HOH . D 4 HOH A 39 190 182 HOH HOH . D 4 HOH A 40 191 183 HOH HOH . D 4 HOH A 41 192 184 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P2 THP . . . C 3 6.501 14.024 20.698 1 34.87 ? P2 THP 151 A 1 HETATM 2 O O4P THP . . . C 3 5.246 13.821 19.959 1 39.49 ? O4P THP 151 A 1 HETATM 3 O O5P THP . . . C 3 7.561 14.891 20.151 1 31.14 ? O5P THP 151 A 1 HETATM 4 O O6P THP . . . C 3 7.135 12.549 20.879 1 38.62 ? O6P THP 151 A 1 HETATM 5 P P1 THP . . . C 3 5.11 11.708 26.506 1 41.54 ? P1 THP 151 A 1 HETATM 6 O O1P THP . . . C 3 6.516 11.627 26.053 1 40.27 ? O1P THP 151 A 1 HETATM 7 O O2P THP . . . C 3 4.703 11.285 27.86 1 42.95 ? O2P THP 151 A 1 HETATM 8 O O3P THP . . . C 3 4.188 10.885 25.47 1 43.4 ? O3P THP 151 A 1 HETATM 9 O O5' THP . . . C 3 6.183 14.483 22.175 1 36.49 ? O5' THP 151 A 1 HETATM 10 C C5' THP . . . C 3 5.013 13.979 22.849 1 34.99 ? C5' THP 151 A 1 HETATM 11 C C4' THP . . . C 3 5.228 14.192 24.319 1 33.59 ? C4' THP 151 A 1 HETATM 12 O O4' THP . . . C 3 5.396 15.58 24.57 1 38.23 ? O4' THP 151 A 1 HETATM 13 C C3' THP . . . C 3 4.055 13.774 25.192 1 34.55 ? C3' THP 151 A 1 HETATM 14 O O3' THP . . . C 3 4.59 13.241 26.433 1 40.19 ? O3' THP 151 A 1 HETATM 15 C C2' THP . . . C 3 3.228 15.063 25.345 1 31.08 ? C2' THP 151 A 1 HETATM 16 C C1' THP . . . C 3 4.361 16.09 25.383 1 30.47 ? C1' THP 151 A 1 HETATM 17 N N1 THP . . . C 3 3.927 17.417 24.864 1 28.81 ? N1 THP 151 A 1 HETATM 18 C C2 THP . . . C 3 3.465 18.283 25.817 1 26.1 ? C2 THP 151 A 1 HETATM 19 O O2 THP . . . C 3 3.625 18.021 27.001 1 26.58 ? O2 THP 151 A 1 HETATM 20 N N3 THP . . . C 3 2.869 19.442 25.421 1 28.84 ? N3 THP 151 A 1 HETATM 21 C C4 THP . . . C 3 2.732 19.784 24.107 1 24.21 ? C4 THP 151 A 1 HETATM 22 O O4 THP . . . C 3 2.153 20.835 23.89 1 23.44 ? O4 THP 151 A 1 HETATM 23 C C5 THP . . . C 3 3.193 18.893 23.133 1 23.56 ? C5 THP 151 A 1 HETATM 24 C C5M THP . . . C 3 3.007 19.279 21.694 1 24.55 ? C5M THP 151 A 1 HETATM 25 C C6 THP . . . C 3 3.779 17.691 23.528 1 25.71 ? C6 THP 151 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #