data_1ENY # _model_server_result.job_id MDKBies97nnQWbud2w4qKw _model_server_result.datetime_utc '2024-11-23 03:40:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1eny # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 1ENY # _exptl.entry_id 1ENY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1ENY _cell.length_a 100.14 _cell.length_b 100.14 _cell.length_c 140.45 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ENY _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 62 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA,PQS tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1,2 A,B,C 2 1,3,2,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 9_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 46.816667 3 'crystal symmetry operation' 4_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 -50.07 86.723784 0 4 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -50.07 86.723784 46.816667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 1ENY _atom_sites.fract_transf_matrix[1][1] 0.009986 _atom_sites.fract_transf_matrix[1][2] 0.005765 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011531 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00712 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 500 500 NAD NAD . C 3 HOH A 1 501 501 HOH HOH . C 3 HOH A 2 502 502 HOH HOH . C 3 HOH A 3 503 503 HOH HOH . C 3 HOH A 4 504 504 HOH HOH . C 3 HOH A 5 505 505 HOH HOH . C 3 HOH A 6 506 506 HOH HOH . C 3 HOH A 7 507 507 HOH HOH . C 3 HOH A 8 508 508 HOH HOH . C 3 HOH A 9 509 509 HOH HOH . C 3 HOH A 10 510 510 HOH HOH . C 3 HOH A 11 511 511 HOH HOH . C 3 HOH A 12 512 512 HOH HOH . C 3 HOH A 13 513 513 HOH HOH . C 3 HOH A 14 514 514 HOH HOH . C 3 HOH A 15 515 515 HOH HOH . C 3 HOH A 16 516 516 HOH HOH . C 3 HOH A 17 517 517 HOH HOH . C 3 HOH A 18 518 518 HOH HOH . C 3 HOH A 19 519 519 HOH HOH . C 3 HOH A 20 520 520 HOH HOH . C 3 HOH A 21 521 521 HOH HOH . C 3 HOH A 22 522 522 HOH HOH . C 3 HOH A 23 523 523 HOH HOH . C 3 HOH A 24 524 524 HOH HOH . C 3 HOH A 25 525 525 HOH HOH . C 3 HOH A 26 526 526 HOH HOH . C 3 HOH A 27 527 527 HOH HOH . C 3 HOH A 28 528 528 HOH HOH . C 3 HOH A 29 529 529 HOH HOH . C 3 HOH A 30 530 530 HOH HOH . C 3 HOH A 31 531 531 HOH HOH . C 3 HOH A 32 532 532 HOH HOH . C 3 HOH A 33 533 533 HOH HOH . C 3 HOH A 34 534 534 HOH HOH . C 3 HOH A 35 535 535 HOH HOH . C 3 HOH A 36 536 536 HOH HOH . C 3 HOH A 37 537 537 HOH HOH . C 3 HOH A 38 538 538 HOH HOH . C 3 HOH A 39 539 539 HOH HOH . C 3 HOH A 40 540 540 HOH HOH . C 3 HOH A 41 541 541 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 -0.92 34.517 11.256 1 28.18 ? PA NAD 500 A 1 HETATM 2 O O1A NAD . . . B 2 -1.361 33.241 10.563 1 26.55 ? O1A NAD 500 A 1 HETATM 3 O O2A NAD . . . B 2 0.285 35.225 10.719 1 27.27 ? O2A NAD 500 A 1 HETATM 4 O O5B NAD . . . B 2 -0.491 34.168 12.814 1 30.13 ? O5B NAD 500 A 1 HETATM 5 C C5B NAD . . . B 2 -1.139 33.283 13.766 1 29.41 ? C5B NAD 500 A 1 HETATM 6 C C4B NAD . . . B 2 -0.111 32.602 14.627 1 29.02 ? C4B NAD 500 A 1 HETATM 7 O O4B NAD . . . B 2 -0.576 31.385 15.32 1 29.29 ? O4B NAD 500 A 1 HETATM 8 C C3B NAD . . . B 2 1.142 32.169 13.832 1 27.33 ? C3B NAD 500 A 1 HETATM 9 O O3B NAD . . . B 2 2.213 33.055 14.243 1 26.16 ? O3B NAD 500 A 1 HETATM 10 C C2B NAD . . . B 2 1.396 30.713 14.259 1 27.95 ? C2B NAD 500 A 1 HETATM 11 O O2B NAD . . . B 2 2.782 30.507 14.387 1 27.99 ? O2B NAD 500 A 1 HETATM 12 C C1B NAD . . . B 2 0.591 30.595 15.579 1 28.29 ? C1B NAD 500 A 1 HETATM 13 N N9A NAD . . . B 2 0.22 29.21 15.979 1 26.45 ? N9A NAD 500 A 1 HETATM 14 C C8A NAD . . . B 2 -0.521 28.098 15.626 1 25.28 ? C8A NAD 500 A 1 HETATM 15 N N7A NAD . . . B 2 -0.476 27.084 16.481 1 25.34 ? N7A NAD 500 A 1 HETATM 16 C C5A NAD . . . B 2 0.325 27.571 17.511 1 24.39 ? C5A NAD 500 A 1 HETATM 17 C C6A NAD . . . B 2 0.784 26.988 18.673 1 23.2 ? C6A NAD 500 A 1 HETATM 18 N N6A NAD . . . B 2 0.524 25.741 19.035 1 22.88 ? N6A NAD 500 A 1 HETATM 19 N N1A NAD . . . B 2 1.599 27.704 19.431 1 24.61 ? N1A NAD 500 A 1 HETATM 20 C C2A NAD . . . B 2 1.894 28.952 19.077 1 24.77 ? C2A NAD 500 A 1 HETATM 21 N N3A NAD . . . B 2 1.584 29.6 17.974 1 24.99 ? N3A NAD 500 A 1 HETATM 22 C C4A NAD . . . B 2 0.763 28.856 17.212 1 25.4 ? C4A NAD 500 A 1 HETATM 23 O O3 NAD . . . B 2 -2.295 35.165 11.3 1 26.52 ? O3 NAD 500 A 1 HETATM 24 P PN NAD . . . B 2 -2.833 36.482 11.765 1 24.95 ? PN NAD 500 A 1 HETATM 25 O O1N NAD . . . B 2 -4.113 36.656 11.008 1 23.89 ? O1N NAD 500 A 1 HETATM 26 O O2N NAD . . . B 2 -1.866 37.596 11.968 1 23.08 ? O2N NAD 500 A 1 HETATM 27 O O5D NAD . . . B 2 -3.536 36.003 13.129 1 23.85 ? O5D NAD 500 A 1 HETATM 28 C C5D NAD . . . B 2 -3.188 36.486 14.423 1 21.94 ? C5D NAD 500 A 1 HETATM 29 C C4D NAD . . . B 2 -4.48 36.622 15.24 1 19.25 ? C4D NAD 500 A 1 HETATM 30 O O4D NAD . . . B 2 -5.275 37.739 14.74 1 16.34 ? O4D NAD 500 A 1 HETATM 31 C C3D NAD . . . B 2 -5.317 35.348 15.115 1 17.01 ? C3D NAD 500 A 1 HETATM 32 O O3D NAD . . . B 2 -5.763 35.046 16.386 1 18.32 ? O3D NAD 500 A 1 HETATM 33 C C2D NAD . . . B 2 -6.466 35.799 14.279 1 14.89 ? C2D NAD 500 A 1 HETATM 34 O O2D NAD . . . B 2 -7.623 35.118 14.667 1 14.34 ? O2D NAD 500 A 1 HETATM 35 C C1D NAD . . . B 2 -6.609 37.237 14.711 1 14.46 ? C1D NAD 500 A 1 HETATM 36 N N1N NAD . . . B 2 -7.455 38.046 13.853 1 13.03 ? N1N NAD 500 A 1 HETATM 37 C C2N NAD . . . B 2 -7.176 37.997 12.494 1 13.91 ? C2N NAD 500 A 1 HETATM 38 C C3N NAD . . . B 2 -7.841 38.577 11.453 1 15.07 ? C3N NAD 500 A 1 HETATM 39 C C7N NAD . . . B 2 -7.514 38.534 10.017 1 17.49 ? C7N NAD 500 A 1 HETATM 40 O O7N NAD . . . B 2 -8.325 38.995 9.056 1 17.08 ? O7N NAD 500 A 1 HETATM 41 N N7N NAD . . . B 2 -6.341 38.159 9.532 1 17.18 ? N7N NAD 500 A 1 HETATM 42 C C4N NAD . . . B 2 -8.781 39.417 11.976 1 14.49 ? C4N NAD 500 A 1 HETATM 43 C C5N NAD . . . B 2 -9.078 39.655 13.346 1 13.2 ? C5N NAD 500 A 1 HETATM 44 C C6N NAD . . . B 2 -8.384 38.897 14.333 1 11.83 ? C6N NAD 500 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 44 #