data_1ENZ # _model_server_result.job_id m3yB_MJWRJdkMXDdZynpiQ _model_server_result.datetime_utc '2024-11-23 07:08:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1enz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 1ENZ # _exptl.entry_id 1ENZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1ENZ _cell.length_a 100.14 _cell.length_b 100.14 _cell.length_c 139.95 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ENZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 62 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA,PQS tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1,2 A,B,C 2 1,3,2,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 9_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 46.65 3 'crystal symmetry operation' 4_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 -50.07 86.723784 0 4 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -50.07 86.723784 46.65 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 1ENZ _atom_sites.fract_transf_matrix[1][1] 0.009986 _atom_sites.fract_transf_matrix[1][2] 0.005765 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011531 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007145 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 500 500 NAD NAD . C 3 HOH A 1 271 271 HOH HOH . C 3 HOH A 2 272 272 HOH HOH . C 3 HOH A 3 273 273 HOH HOH . C 3 HOH A 4 274 274 HOH HOH . C 3 HOH A 5 275 275 HOH HOH . C 3 HOH A 6 276 276 HOH HOH . C 3 HOH A 7 277 277 HOH HOH . C 3 HOH A 8 278 278 HOH HOH . C 3 HOH A 9 279 279 HOH HOH . C 3 HOH A 10 280 280 HOH HOH . C 3 HOH A 11 281 281 HOH HOH . C 3 HOH A 12 282 282 HOH HOH . C 3 HOH A 13 283 283 HOH HOH . C 3 HOH A 14 284 284 HOH HOH . C 3 HOH A 15 285 285 HOH HOH . C 3 HOH A 16 286 286 HOH HOH . C 3 HOH A 17 287 287 HOH HOH . C 3 HOH A 18 288 288 HOH HOH . C 3 HOH A 19 289 289 HOH HOH . C 3 HOH A 20 290 290 HOH HOH . C 3 HOH A 21 291 291 HOH HOH . C 3 HOH A 22 292 292 HOH HOH . C 3 HOH A 23 293 293 HOH HOH . C 3 HOH A 24 294 294 HOH HOH . C 3 HOH A 25 295 295 HOH HOH . C 3 HOH A 26 296 296 HOH HOH . C 3 HOH A 27 297 297 HOH HOH . C 3 HOH A 28 298 298 HOH HOH . C 3 HOH A 29 299 299 HOH HOH . C 3 HOH A 30 300 300 HOH HOH . C 3 HOH A 31 301 301 HOH HOH . C 3 HOH A 32 302 302 HOH HOH . C 3 HOH A 33 303 303 HOH HOH . C 3 HOH A 34 304 304 HOH HOH . C 3 HOH A 35 305 305 HOH HOH . C 3 HOH A 36 306 306 HOH HOH . C 3 HOH A 37 307 307 HOH HOH . C 3 HOH A 38 308 308 HOH HOH . C 3 HOH A 39 309 309 HOH HOH . C 3 HOH A 40 310 310 HOH HOH . C 3 HOH A 41 311 311 HOH HOH . C 3 HOH A 42 312 312 HOH HOH . C 3 HOH A 43 313 313 HOH HOH . C 3 HOH A 44 314 314 HOH HOH . C 3 HOH A 45 315 315 HOH HOH . C 3 HOH A 46 316 316 HOH HOH . C 3 HOH A 47 317 317 HOH HOH . C 3 HOH A 48 318 318 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 -1.147 34.289 11.049 1 23.76 ? PA NAD 500 A 1 HETATM 2 O O1A NAD . . . B 2 -1.409 33.135 10.073 1 28 ? O1A NAD 500 A 1 HETATM 3 O O2A NAD . . . B 2 0.052 35.292 10.951 1 23.92 ? O2A NAD 500 A 1 HETATM 4 O O5B NAD . . . B 2 -0.89 33.35 12.4 1 22.52 ? O5B NAD 500 A 1 HETATM 5 C C5B NAD . . . B 2 -1.205 33.471 13.796 1 18.58 ? C5B NAD 500 A 1 HETATM 6 C C4B NAD . . . B 2 -0.307 32.419 14.415 1 16.95 ? C4B NAD 500 A 1 HETATM 7 O O4B NAD . . . B 2 -0.812 31.194 15.04 1 17.28 ? O4B NAD 500 A 1 HETATM 8 C C3B NAD . . . B 2 0.927 32.02 13.63 1 15.03 ? C3B NAD 500 A 1 HETATM 9 O O3B NAD . . . B 2 1.785 32.911 14.175 1 12.94 ? O3B NAD 500 A 1 HETATM 10 C C2B NAD . . . B 2 1.242 30.583 14.063 1 15.74 ? C2B NAD 500 A 1 HETATM 11 O O2B NAD . . . B 2 2.606 30.365 14.331 1 15.76 ? O2B NAD 500 A 1 HETATM 12 C C1B NAD . . . B 2 0.407 30.504 15.357 1 16.51 ? C1B NAD 500 A 1 HETATM 13 N N9A NAD . . . B 2 0.145 29.169 15.881 1 16.16 ? N9A NAD 500 A 1 HETATM 14 C C8A NAD . . . B 2 -0.611 28.07 15.643 1 16.37 ? C8A NAD 500 A 1 HETATM 15 N N7A NAD . . . B 2 -0.472 27.101 16.521 1 16.22 ? N7A NAD 500 A 1 HETATM 16 C C5A NAD . . . B 2 0.436 27.63 17.404 1 15.54 ? C5A NAD 500 A 1 HETATM 17 C C6A NAD . . . B 2 1.035 27.07 18.514 1 14.74 ? C6A NAD 500 A 1 HETATM 18 N N6A NAD . . . B 2 0.765 25.807 18.892 1 14.01 ? N6A NAD 500 A 1 HETATM 19 N N1A NAD . . . B 2 1.926 27.844 19.171 1 15.15 ? N1A NAD 500 A 1 HETATM 20 C C2A NAD . . . B 2 2.178 29.083 18.753 1 15.43 ? C2A NAD 500 A 1 HETATM 21 N N3A NAD . . . B 2 1.699 29.687 17.673 1 16.14 ? N3A NAD 500 A 1 HETATM 22 C C4A NAD . . . B 2 0.855 28.879 17.019 1 16.09 ? C4A NAD 500 A 1 HETATM 23 O O3 NAD . . . B 2 -2.382 35.186 11.159 1 22.92 ? O3 NAD 500 A 1 HETATM 24 P PN NAD . . . B 2 -2.928 36.5 11.848 1 23.46 ? PN NAD 500 A 1 HETATM 25 O O1N NAD . . . B 2 -4.332 36.593 11.169 1 26.69 ? O1N NAD 500 A 1 HETATM 26 O O2N NAD . . . B 2 -1.873 37.586 11.949 1 23.61 ? O2N NAD 500 A 1 HETATM 27 O O5D NAD . . . B 2 -3.218 35.97 13.417 1 22.59 ? O5D NAD 500 A 1 HETATM 28 C C5D NAD . . . B 2 -3.224 36.949 14.438 1 17.15 ? C5D NAD 500 A 1 HETATM 29 C C4D NAD . . . B 2 -4.512 36.826 15.176 1 13.79 ? C4D NAD 500 A 1 HETATM 30 O O4D NAD . . . B 2 -5.442 37.841 14.717 1 12.96 ? O4D NAD 500 A 1 HETATM 31 C C3D NAD . . . B 2 -5.178 35.531 14.787 1 12.37 ? C3D NAD 500 A 1 HETATM 32 O O3D NAD . . . B 2 -5.314 34.787 15.964 1 12.24 ? O3D NAD 500 A 1 HETATM 33 C C2D NAD . . . B 2 -6.56 35.888 14.227 1 11.62 ? C2D NAD 500 A 1 HETATM 34 O O2D NAD . . . B 2 -7.571 35.087 14.815 1 11.37 ? O2D NAD 500 A 1 HETATM 35 C C1D NAD . . . B 2 -6.735 37.305 14.713 1 11.29 ? C1D NAD 500 A 1 HETATM 36 N N1N NAD . . . B 2 -7.528 38.138 13.852 1 11.06 ? N1N NAD 500 A 1 HETATM 37 C C2N NAD . . . B 2 -7.288 38.045 12.554 1 12.97 ? C2N NAD 500 A 1 HETATM 38 C C3N NAD . . . B 2 -7.939 38.614 11.527 1 14.01 ? C3N NAD 500 A 1 HETATM 39 C C7N NAD . . . B 2 -7.593 38.513 10.149 1 14.16 ? C7N NAD 500 A 1 HETATM 40 O O7N NAD . . . B 2 -8.516 38.875 9.186 1 14.53 ? O7N NAD 500 A 1 HETATM 41 N N7N NAD . . . B 2 -6.348 38.172 9.827 1 13.32 ? N7N NAD 500 A 1 HETATM 42 C C4N NAD . . . B 2 -8.863 39.472 11.999 1 14.1 ? C4N NAD 500 A 1 HETATM 43 C C5N NAD . . . B 2 -9.212 39.691 13.327 1 13.21 ? C5N NAD 500 A 1 HETATM 44 C C6N NAD . . . B 2 -8.507 38.933 14.277 1 11.67 ? C6N NAD 500 A 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #