data_1EO8 # _model_server_result.job_id xlI-L8iqb9qRItx7bLZvWw _model_server_result.datetime_utc '2025-02-26 19:25:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1eo8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":440}' # _entry.id 1EO8 # _exptl.entry_id 1EO8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 7 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1EO8 _cell.length_a 138.15 _cell.length_b 138.15 _cell.length_c 129.5 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EO8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 138.15 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 69.075 119.64141 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 3 2 MAN NAG C1 O1 . O4 HO4 . sing 3 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n E NAG 1 C 1 NAG D 450 NAG 5 n E NAG 2 C 2 NAG D 451 NAG 5 n E MAN 3 C 3 MAN D 452 MAN 6 n F NAG 1 D 1 NAG A 460 NAG 6 n F NAG 2 D 2 NAG A 461 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 14 A CYS 14 1_555 B SG CYS 137 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 52 A CYS 52 1_555 A SG CYS 277 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 76 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 97 A CYS 97 1_555 A SG CYS 139 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf5 A SG CYS 281 A CYS 281 1_555 A SG CYS 305 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf6 B SG CYS 144 B CYS 144 1_555 B SG CYS 148 B CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf7 C SG CYS 23 L CYS 23 1_555 C SG CYS 87 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf8 C SG CYS 132 L CYS 133 1_555 C SG CYS 192 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf9 D SG CYS 22 H CYS 22 1_555 D SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf10 D SG CYS 145 H CYS 140 1_555 D SG CYS 200 H CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 A ND2 ASN 81 A ASN 81 1_555 G C1 NAG . A NAG 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale2 A ND2 ASN 165 A ASN 165 1_555 E C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.472 ? covale ? covale3 A ND2 ASN 285 A ASN 285 1_555 F C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale4 B ND2 ASN 154 B ASN 154 1_555 H C1 NAG . B NAG 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.57 ? covale ? covale5 E O4 NAG . C NAG 1 1_555 E C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale6 E O4 NAG . C NAG 2 1_555 E C1 MAN . C MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.41 ? covale ? covale7 F O4 NAG . D NAG 1 1_555 F C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 261 n n C1 O1 NAG sing 262 n n C1 O5 NAG sing 263 n n C1 H1 NAG sing 264 n n C2 C3 NAG sing 265 n n C2 N2 NAG sing 266 n n C2 H2 NAG sing 267 n n C3 C4 NAG sing 268 n n C3 O3 NAG sing 269 n n C3 H3 NAG sing 270 n n C4 C5 NAG sing 271 n n C4 O4 NAG sing 272 n n C4 H4 NAG sing 273 n n C5 C6 NAG sing 274 n n C5 O5 NAG sing 275 n n C5 H5 NAG sing 276 n n C6 O6 NAG sing 277 n n C6 H61 NAG sing 278 n n C6 H62 NAG sing 279 n n C7 C8 NAG sing 280 n n C7 N2 NAG sing 281 n n C7 O7 NAG doub 282 n n C8 H81 NAG sing 283 n n C8 H82 NAG sing 284 n n C8 H83 NAG sing 285 n n N2 HN2 NAG sing 286 n n O1 HO1 NAG sing 287 n n O3 HO3 NAG sing 288 n n O4 HO4 NAG sing 289 n n O6 HO6 NAG sing 290 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1EO8 _atom_sites.fract_transf_matrix[1][1] 0.007239 _atom_sites.fract_transf_matrix[1][2] 0.004179 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008358 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007722 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 NAG A 1 440 440 NAG NAG . H 7 NAG B 1 410 410 NAG NAG . I 8 HOH A 1 462 1 HOH HOH . I 8 HOH A 2 463 3 HOH HOH . I 8 HOH A 3 464 6 HOH HOH . I 8 HOH A 4 465 10 HOH HOH . I 8 HOH A 5 466 12 HOH HOH . I 8 HOH A 6 467 13 HOH HOH . I 8 HOH A 7 468 18 HOH HOH . I 8 HOH A 8 469 20 HOH HOH . I 8 HOH A 9 470 21 HOH HOH . I 8 HOH A 10 471 24 HOH HOH . I 8 HOH A 11 472 25 HOH HOH . I 8 HOH A 12 473 29 HOH HOH . I 8 HOH A 13 474 30 HOH HOH . I 8 HOH A 14 475 39 HOH HOH . I 8 HOH A 15 476 40 HOH HOH . I 8 HOH A 16 477 42 HOH HOH . I 8 HOH A 17 478 45 HOH HOH . I 8 HOH A 18 479 47 HOH HOH . I 8 HOH A 19 480 49 HOH HOH . I 8 HOH A 20 481 50 HOH HOH . I 8 HOH A 21 482 52 HOH HOH . I 8 HOH A 22 483 55 HOH HOH . I 8 HOH A 23 484 56 HOH HOH . I 8 HOH A 24 485 57 HOH HOH . I 8 HOH A 25 486 58 HOH HOH . I 8 HOH A 26 487 62 HOH HOH . I 8 HOH A 27 488 63 HOH HOH . I 8 HOH A 28 489 64 HOH HOH . I 8 HOH A 29 490 67 HOH HOH . I 8 HOH A 30 491 68 HOH HOH . I 8 HOH A 31 492 69 HOH HOH . I 8 HOH A 32 493 70 HOH HOH . I 8 HOH A 33 494 72 HOH HOH . I 8 HOH A 34 495 73 HOH HOH . I 8 HOH A 35 496 82 HOH HOH . I 8 HOH A 36 497 83 HOH HOH . I 8 HOH A 37 498 86 HOH HOH . I 8 HOH A 38 499 88 HOH HOH . I 8 HOH A 39 500 91 HOH HOH . I 8 HOH A 40 501 95 HOH HOH . I 8 HOH A 41 502 99 HOH HOH . I 8 HOH A 42 503 107 HOH HOH . I 8 HOH A 43 504 109 HOH HOH . J 8 HOH B 1 411 2 HOH HOH . J 8 HOH B 2 412 4 HOH HOH . J 8 HOH B 3 413 5 HOH HOH . J 8 HOH B 4 414 7 HOH HOH . J 8 HOH B 5 415 8 HOH HOH . J 8 HOH B 6 416 9 HOH HOH . J 8 HOH B 7 417 11 HOH HOH . J 8 HOH B 8 418 15 HOH HOH . J 8 HOH B 9 419 16 HOH HOH . J 8 HOH B 10 420 17 HOH HOH . J 8 HOH B 11 421 19 HOH HOH . J 8 HOH B 12 422 26 HOH HOH . J 8 HOH B 13 423 28 HOH HOH . J 8 HOH B 14 424 31 HOH HOH . J 8 HOH B 15 425 33 HOH HOH . J 8 HOH B 16 426 36 HOH HOH . J 8 HOH B 17 427 37 HOH HOH . J 8 HOH B 18 428 38 HOH HOH . J 8 HOH B 19 429 41 HOH HOH . J 8 HOH B 20 430 43 HOH HOH . J 8 HOH B 21 431 46 HOH HOH . J 8 HOH B 22 432 60 HOH HOH . J 8 HOH B 23 433 66 HOH HOH . J 8 HOH B 24 434 74 HOH HOH . J 8 HOH B 25 435 76 HOH HOH . J 8 HOH B 26 436 77 HOH HOH . J 8 HOH B 27 437 79 HOH HOH . J 8 HOH B 28 438 80 HOH HOH . J 8 HOH B 29 439 84 HOH HOH . J 8 HOH B 30 440 85 HOH HOH . J 8 HOH B 31 441 87 HOH HOH . J 8 HOH B 32 442 89 HOH HOH . J 8 HOH B 33 443 90 HOH HOH . J 8 HOH B 34 444 92 HOH HOH . J 8 HOH B 35 445 96 HOH HOH . J 8 HOH B 36 446 97 HOH HOH . J 8 HOH B 37 447 98 HOH HOH . J 8 HOH B 38 448 101 HOH HOH . J 8 HOH B 39 449 102 HOH HOH . J 8 HOH B 40 450 103 HOH HOH . J 8 HOH B 41 451 104 HOH HOH . J 8 HOH B 42 452 105 HOH HOH . J 8 HOH B 43 453 106 HOH HOH . J 8 HOH B 44 454 108 HOH HOH . K 8 HOH L 1 212 23 HOH HOH . K 8 HOH L 2 213 32 HOH HOH . K 8 HOH L 3 214 78 HOH HOH . K 8 HOH L 4 215 81 HOH HOH . K 8 HOH L 5 216 93 HOH HOH . L 8 HOH H 1 213 14 HOH HOH . L 8 HOH H 2 214 22 HOH HOH . L 8 HOH H 3 215 27 HOH HOH . L 8 HOH H 4 216 34 HOH HOH . L 8 HOH H 5 217 35 HOH HOH . L 8 HOH H 6 218 44 HOH HOH . L 8 HOH H 7 219 48 HOH HOH . L 8 HOH H 8 220 51 HOH HOH . L 8 HOH H 9 221 53 HOH HOH . L 8 HOH H 10 222 54 HOH HOH . L 8 HOH H 11 223 59 HOH HOH . L 8 HOH H 12 224 61 HOH HOH . L 8 HOH H 13 225 65 HOH HOH . L 8 HOH H 14 226 71 HOH HOH . L 8 HOH H 15 227 75 HOH HOH . L 8 HOH H 16 228 94 HOH HOH . L 8 HOH H 17 229 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 7 83.294 70.099 31.683 1 49.25 ? C1 NAG 440 A 1 HETATM 2 C C2 NAG . . . G 7 83.482 71.198 30.703 1 52.91 ? C2 NAG 440 A 1 HETATM 3 C C3 NAG . . . G 7 84.527 70.65 29.75 1 56.04 ? C3 NAG 440 A 1 HETATM 4 C C4 NAG . . . G 7 85.888 70.554 30.506 1 57.67 ? C4 NAG 440 A 1 HETATM 5 C C5 NAG . . . G 7 85.713 69.381 31.487 1 56.76 ? C5 NAG 440 A 1 HETATM 6 C C6 NAG . . . G 7 87.016 68.901 32.312 1 57.82 ? C6 NAG 440 A 1 HETATM 7 C C7 NAG . . . G 7 81.575 72.615 30.349 1 51.56 ? C7 NAG 440 A 1 HETATM 8 C C8 NAG . . . G 7 80.165 72.794 29.803 1 53.24 ? C8 NAG 440 A 1 HETATM 9 N N2 NAG . . . G 7 82.163 71.434 30.184 1 52.18 ? N2 NAG 440 A 1 HETATM 10 O O3 NAG . . . G 7 84.652 71.439 28.59 1 58.64 ? O3 NAG 440 A 1 HETATM 11 O O4 NAG . . . G 7 87.004 70.404 29.625 1 62.17 ? O4 NAG 440 A 1 HETATM 12 O O5 NAG . . . G 7 84.58 69.813 32.373 1 55.2 ? O5 NAG 440 A 1 HETATM 13 O O6 NAG . . . G 7 87.628 69.794 33.288 1 58.94 ? O6 NAG 440 A 1 HETATM 14 O O7 NAG . . . G 7 82.132 73.569 30.886 1 50.06 ? O7 NAG 440 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 14 #