data_1EOS
#
_model_server_result.job_id            aXrgHKEy3GJj4yxMX9w2Ew 
_model_server_result.datetime_utc      '2024-12-26 11:15:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1eos 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":130}' 
#
_entry.id    1EOS 
#
_exptl.entry_id    1EOS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              589.407 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "URIDYLYL-2'-5'-PHOSPHO-GUANOSINE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.5 
_cell.angle_gamma         90 
_cell.entry_id            1EOS 
_cell.length_a            101.44 
_cell.length_b            33.45 
_cell.length_c            73.11 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1EOS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D 1 1 
B,E 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 84 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf2 A SG CYS 40 A CYS 40 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
disulf ? disulf3 A SG CYS 58 A CYS 58 1_555 A SG CYS 110 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf4 A SG CYS 65 A CYS 65 1_555 A SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
disulf ? disulf5 B SG CYS 26 B CYS 26 1_555 B SG CYS 84 B CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf6 B SG CYS 40 B CYS 40 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
disulf ? disulf7 B SG CYS 58 B CYS 58 1_555 B SG CYS 110 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf8 B SG CYS 65 B CYS 65 1_555 B SG CYS 72 B CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
#
_chem_comp.formula           'C19 H24 N7 O13 P' 
_chem_comp.formula_weight    589.407 
_chem_comp.id                U2G 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "URIDYLYL-2'-5'-PHOSPHO-GUANOSINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "PHOSPHORIC ACID-2'-[2'-DEOXY-URIDINE]ESTER-5'-GUANOSINE ESTER" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1G C2G U2G sing 330 n n 
N1G C6G U2G sing 331 n n 
N1G H1G U2G sing 332 n n 
C2G N2G U2G sing 333 n n 
C2G N3G U2G doub 334 n n 
N2G H2G1 U2G sing 335 n n 
N2G H2G2 U2G sing 336 n n 
N3G C4G U2G sing 337 n n 
C4G C5G U2G doub 338 n y 
C4G N9G U2G sing 339 n y 
C5G C6G U2G sing 340 n n 
C5G N7G U2G sing 341 n y 
C6G O6G U2G doub 342 n n 
N7G C8G U2G doub 343 n y 
C8G N9G U2G sing 344 n y 
C8G H8G U2G sing 345 n n 
N9G C1B U2G sing 346 n n 
C1B C2B U2G sing 347 n n 
C1B O4B U2G sing 348 n n 
C1B H1G' U2G sing 349 n n 
C2B O2B U2G sing 350 n n 
C2B C3B U2G sing 351 n n 
C2B H2G' U2G sing 352 n n 
O2B HOG2 U2G sing 353 n n 
C3B O3B U2G sing 354 n n 
C3B C4B U2G sing 355 n n 
C3B H3G' U2G sing 356 n n 
O3B HOG3 U2G sing 357 n n 
C4B O4B U2G sing 358 n n 
C4B C5B U2G sing 359 n n 
C4B H4G' U2G sing 360 n n 
C5B O5B U2G sing 361 n n 
C5B H5G1 U2G sing 362 n n 
C5B H5G2 U2G sing 363 n n 
O5B P U2G sing 364 n n 
P O1P U2G doub 365 n n 
P O2P U2G sing 366 n n 
P O2D U2G sing 367 n n 
O2P HOP2 U2G sing 368 n n 
O5D C5D U2G sing 369 n n 
O5D HOU5 U2G sing 370 n n 
C5D C4D U2G sing 371 n n 
C5D H5U1 U2G sing 372 n n 
C5D H5U2 U2G sing 373 n n 
C4D O4D U2G sing 374 n n 
C4D C3D U2G sing 375 n n 
C4D H4U' U2G sing 376 n n 
O4D C1D U2G sing 377 n n 
C3D O3D U2G sing 378 n n 
C3D C2D U2G sing 379 n n 
C3D H3U' U2G sing 380 n n 
O3D HOU3 U2G sing 381 n n 
C2D O2D U2G sing 382 n n 
C2D C1D U2G sing 383 n n 
C2D H2U' U2G sing 384 n n 
C1D N1U U2G sing 385 n n 
C1D H1U' U2G sing 386 n n 
N1U C2U U2G sing 387 n n 
N1U C6U U2G sing 388 n n 
C2U O2U U2G doub 389 n n 
C2U N3U U2G sing 390 n n 
N3U C4U U2G sing 391 n n 
N3U H3U U2G sing 392 n n 
C4U O4U U2G doub 393 n n 
C4U C5U U2G sing 394 n n 
C5U C6U U2G doub 395 n n 
C5U H5U U2G sing 396 n n 
C6U H6U U2G sing 397 n n 
#
_atom_sites.entry_id                     1EOS 
_atom_sites.fract_transf_matrix[1][1]    0.00986 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00009 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0299 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01368 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 U2G A 1 130 130 U2G U2G . 
D 3 HOH A 1 212 212 HOH HOH . 
D 3 HOH A 2 216 216 HOH HOH . 
D 3 HOH A 3 231 231 HOH HOH . 
D 3 HOH A 4 235 235 HOH HOH . 
D 3 HOH A 5 236 236 HOH HOH . 
D 3 HOH A 6 237 237 HOH HOH . 
D 3 HOH A 7 240 240 HOH HOH . 
D 3 HOH A 8 241 241 HOH HOH . 
D 3 HOH A 9 242 242 HOH HOH . 
D 3 HOH A 10 243 243 HOH HOH . 
D 3 HOH A 11 244 244 HOH HOH . 
D 3 HOH A 12 245 245 HOH HOH . 
D 3 HOH A 13 248 248 HOH HOH . 
D 3 HOH A 14 249 249 HOH HOH . 
D 3 HOH A 15 251 251 HOH HOH . 
D 3 HOH A 16 271 271 HOH HOH . 
D 3 HOH A 17 274 274 HOH HOH . 
D 3 HOH A 18 275 275 HOH HOH . 
D 3 HOH A 19 276 276 HOH HOH . 
D 3 HOH A 20 277 277 HOH HOH . 
D 3 HOH A 21 278 278 HOH HOH . 
D 3 HOH A 22 279 279 HOH HOH . 
D 3 HOH A 23 281 281 HOH HOH . 
D 3 HOH A 24 282 282 HOH HOH . 
D 3 HOH A 25 285 285 HOH HOH . 
D 3 HOH A 26 286 286 HOH HOH . 
D 3 HOH A 27 289 289 HOH HOH . 
D 3 HOH A 28 290 290 HOH HOH . 
D 3 HOH A 29 292 292 HOH HOH . 
D 3 HOH A 30 296 296 HOH HOH . 
D 3 HOH A 31 298 298 HOH HOH . 
D 3 HOH A 32 300 300 HOH HOH . 
D 3 HOH A 33 301 301 HOH HOH . 
D 3 HOH A 34 302 302 HOH HOH . 
D 3 HOH A 35 307 307 HOH HOH . 
D 3 HOH A 36 308 308 HOH HOH . 
D 3 HOH A 37 310 310 HOH HOH . 
D 3 HOH A 38 311 311 HOH HOH . 
D 3 HOH A 39 312 312 HOH HOH . 
D 3 HOH A 40 314 314 HOH HOH . 
D 3 HOH A 41 317 317 HOH HOH . 
D 3 HOH A 42 321 321 HOH HOH . 
D 3 HOH A 43 324 324 HOH HOH . 
D 3 HOH A 44 326 326 HOH HOH . 
E 3 HOH B 1 201 201 HOH HOH . 
E 3 HOH B 2 202 202 HOH HOH . 
E 3 HOH B 3 203 203 HOH HOH . 
E 3 HOH B 4 205 205 HOH HOH . 
E 3 HOH B 5 206 206 HOH HOH . 
E 3 HOH B 6 207 207 HOH HOH . 
E 3 HOH B 7 208 208 HOH HOH . 
E 3 HOH B 8 209 209 HOH HOH . 
E 3 HOH B 9 210 210 HOH HOH . 
E 3 HOH B 10 211 211 HOH HOH . 
E 3 HOH B 11 215 215 HOH HOH . 
E 3 HOH B 12 217 217 HOH HOH . 
E 3 HOH B 13 219 219 HOH HOH . 
E 3 HOH B 14 222 222 HOH HOH . 
E 3 HOH B 15 225 225 HOH HOH . 
E 3 HOH B 16 226 226 HOH HOH . 
E 3 HOH B 17 229 229 HOH HOH . 
E 3 HOH B 18 252 252 HOH HOH . 
E 3 HOH B 19 253 253 HOH HOH . 
E 3 HOH B 20 255 255 HOH HOH . 
E 3 HOH B 21 256 256 HOH HOH . 
E 3 HOH B 22 257 257 HOH HOH . 
E 3 HOH B 23 258 258 HOH HOH . 
E 3 HOH B 24 259 259 HOH HOH . 
E 3 HOH B 25 260 260 HOH HOH . 
E 3 HOH B 26 261 261 HOH HOH . 
E 3 HOH B 27 262 262 HOH HOH . 
E 3 HOH B 28 263 263 HOH HOH . 
E 3 HOH B 29 264 264 HOH HOH . 
E 3 HOH B 30 265 265 HOH HOH . 
E 3 HOH B 31 283 283 HOH HOH . 
E 3 HOH B 32 284 284 HOH HOH . 
E 3 HOH B 33 287 287 HOH HOH . 
E 3 HOH B 34 288 288 HOH HOH . 
E 3 HOH B 35 291 291 HOH HOH . 
E 3 HOH B 36 293 293 HOH HOH . 
E 3 HOH B 37 294 294 HOH HOH . 
E 3 HOH B 38 295 295 HOH HOH . 
E 3 HOH B 39 297 297 HOH HOH . 
E 3 HOH B 40 299 299 HOH HOH . 
E 3 HOH B 41 303 303 HOH HOH . 
E 3 HOH B 42 304 304 HOH HOH . 
E 3 HOH B 43 305 305 HOH HOH . 
E 3 HOH B 44 306 306 HOH HOH . 
E 3 HOH B 45 309 309 HOH HOH . 
E 3 HOH B 46 313 313 HOH HOH . 
E 3 HOH B 47 315 315 HOH HOH . 
E 3 HOH B 48 316 316 HOH HOH . 
E 3 HOH B 49 318 318 HOH HOH . 
E 3 HOH B 50 319 319 HOH HOH . 
E 3 HOH B 51 320 320 HOH HOH . 
E 3 HOH B 52 323 323 HOH HOH . 
E 3 HOH B 53 325 325 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5B U2G . . . C 2 35.206 -2.741 23.372 1 36.3 ? O5B U2G 130 A 1 
HETATM 2 P P U2G . . . C 2 36.698 -2.769 23.55 1 45.3 ? P U2G 130 A 1 
HETATM 3 O O1P U2G . . . C 2 37.328 -3.872 24.32 1 52.24 ? O1P U2G 130 A 1 
HETATM 4 O O2P U2G . . . C 2 37.363 -2.687 22.112 1 48.65 ? O2P U2G 130 A 1 
HETATM 5 O O5D U2G . . . C 2 40.269 2.395 22.64 1 58.79 ? O5D U2G 130 A 1 
HETATM 6 C C5D U2G . . . C 2 40.704 1.232 23.372 1 53.57 ? C5D U2G 130 A 1 
HETATM 7 C C4D U2G . . . C 2 39.515 0.416 23.818 1 50.26 ? C4D U2G 130 A 1 
HETATM 8 O O4D U2G . . . C 2 38.775 1.146 24.826 1 47.33 ? O4D U2G 130 A 1 
HETATM 9 C C3D U2G . . . C 2 38.47 0.14 22.752 1 47.33 ? C3D U2G 130 A 1 
HETATM 10 O O3D U2G . . . C 2 38.869 -0.903 21.894 1 50.64 ? O3D U2G 130 A 1 
HETATM 11 C C2D U2G . . . C 2 37.233 -0.186 23.596 1 45.43 ? C2D U2G 130 A 1 
HETATM 12 O O2D U2G . . . C 2 37.105 -1.407 24.307 1 44.74 ? O2D U2G 130 A 1 
HETATM 13 C C1D U2G . . . C 2 37.399 0.807 24.743 1 43.01 ? C1D U2G 130 A 1 
HETATM 14 N N1U U2G . . . C 2 36.611 2.035 24.565 1 34.52 ? N1U U2G 130 A 1 
HETATM 15 C C2U U2G . . . C 2 35.507 2.184 25.38 1 24.27 ? C2U U2G 130 A 1 
HETATM 16 O O2U U2G . . . C 2 35.138 1.318 26.16 1 19.34 ? O2U U2G 130 A 1 
HETATM 17 N N3U U2G . . . C 2 34.833 3.375 25.225 1 26 ? N3U U2G 130 A 1 
HETATM 18 C C4U U2G . . . C 2 35.13 4.39 24.328 1 30.56 ? C4U U2G 130 A 1 
HETATM 19 O O4U U2G . . . C 2 34.417 5.39 24.297 1 33.33 ? O4U U2G 130 A 1 
HETATM 20 C C5U U2G . . . C 2 36.278 4.144 23.485 1 33.8 ? C5U U2G 130 A 1 
HETATM 21 C C6U U2G . . . C 2 36.968 3.004 23.63 1 34.54 ? C6U U2G 130 A 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           21 
#