data_1EPB # _model_server_result.job_id TeS2JKj558oKe_jZ5ahnpg _model_server_result.datetime_utc '2025-07-02 15:40:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1epb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":165}' # _entry.id 1EPB # _exptl.entry_id 1EPB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 300.435 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(9cis)-retinoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.44 _cell.angle_gamma 90 _cell.entry_id 1EPB _cell.length_a 39.8 _cell.length_b 58.89 _cell.length_c 66.65 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EPB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 60 A CYS 60 1_555 A SG CYS 154 A CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 B SG CYS 60 B CYS 60 1_555 B SG CYS 154 B CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? # _chem_comp.formula 'C20 H28 O2' _chem_comp.formula_weight 300.435 _chem_comp.id 9CR _chem_comp.mon_nstd_flag . _chem_comp.name '(9cis)-retinoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C15 9CR doub 1 n n C15 C14 9CR sing 2 n n C15 O2 9CR sing 3 n n C14 C13 9CR doub 4 e n C13 C12 9CR sing 5 n n C13 C20 9CR sing 6 n n C12 C11 9CR doub 7 e n C11 C10 9CR sing 8 n n C18 C5 9CR sing 9 n n C10 C9 9CR doub 10 z n C9 C19 9CR sing 11 n n C9 C8 9CR sing 12 n n C8 C7 9CR doub 13 e n C5 C4 9CR sing 14 n n C5 C6 9CR doub 15 n n C4 C3 9CR sing 16 n n C7 C6 9CR sing 17 n n C6 C1 9CR sing 18 n n C3 C2 9CR sing 19 n n C1 C17 9CR sing 20 n n C1 C2 9CR sing 21 n n C1 C16 9CR sing 22 n n C2 H1 9CR sing 23 n n C2 H2 9CR sing 24 n n C3 H3 9CR sing 25 n n C3 H4 9CR sing 26 n n C4 H5 9CR sing 27 n n C4 H6 9CR sing 28 n n C7 H7 9CR sing 29 n n C8 H8 9CR sing 30 n n C10 H9 9CR sing 31 n n C11 H10 9CR sing 32 n n C12 H11 9CR sing 33 n n C14 H12 9CR sing 34 n n C16 H13 9CR sing 35 n n C16 H14 9CR sing 36 n n C16 H15 9CR sing 37 n n C17 H16 9CR sing 38 n n C17 H17 9CR sing 39 n n C17 H18 9CR sing 40 n n C18 H19 9CR sing 41 n n C18 H20 9CR sing 42 n n C18 H21 9CR sing 43 n n C19 H22 9CR sing 44 n n C19 H23 9CR sing 45 n n C19 H24 9CR sing 46 n n C20 H25 9CR sing 47 n n C20 H26 9CR sing 48 n n C20 H27 9CR sing 49 n n O2 H28 9CR sing 50 n n # _atom_sites.entry_id 1EPB _atom_sites.fract_transf_matrix[1][1] 0.025126 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008868 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016981 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015911 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 9CR A 1 165 1 9CR 9CR . D 2 9CR B 1 165 2 9CR 9CR . E 3 HOH A 1 166 2 HOH HOH . E 3 HOH A 2 167 3 HOH HOH . E 3 HOH A 3 168 8 HOH HOH . E 3 HOH A 4 169 9 HOH HOH . E 3 HOH A 5 170 10 HOH HOH . E 3 HOH A 6 171 11 HOH HOH . E 3 HOH A 7 172 12 HOH HOH . E 3 HOH A 8 173 13 HOH HOH . E 3 HOH A 9 174 14 HOH HOH . E 3 HOH A 10 175 15 HOH HOH . E 3 HOH A 11 176 16 HOH HOH . E 3 HOH A 12 177 17 HOH HOH . E 3 HOH A 13 178 20 HOH HOH . E 3 HOH A 14 179 21 HOH HOH . E 3 HOH A 15 180 22 HOH HOH . E 3 HOH A 16 181 23 HOH HOH . E 3 HOH A 17 182 24 HOH HOH . E 3 HOH A 18 183 25 HOH HOH . E 3 HOH A 19 184 26 HOH HOH . E 3 HOH A 20 185 27 HOH HOH . E 3 HOH A 21 186 28 HOH HOH . E 3 HOH A 22 187 30 HOH HOH . E 3 HOH A 23 188 31 HOH HOH . E 3 HOH A 24 189 32 HOH HOH . E 3 HOH A 25 190 33 HOH HOH . E 3 HOH A 26 191 34 HOH HOH . E 3 HOH A 27 192 35 HOH HOH . E 3 HOH A 28 193 42 HOH HOH . E 3 HOH A 29 194 48 HOH HOH . E 3 HOH A 30 195 49 HOH HOH . E 3 HOH A 31 196 52 HOH HOH . E 3 HOH A 32 197 54 HOH HOH . E 3 HOH A 33 198 56 HOH HOH . E 3 HOH A 34 199 57 HOH HOH . E 3 HOH A 35 200 58 HOH HOH . E 3 HOH A 36 201 59 HOH HOH . E 3 HOH A 37 202 60 HOH HOH . E 3 HOH A 38 203 62 HOH HOH . F 3 HOH B 1 166 11 HOH HOH . F 3 HOH B 2 167 4 HOH HOH . F 3 HOH B 3 168 5 HOH HOH . F 3 HOH B 4 169 6 HOH HOH . F 3 HOH B 5 170 7 HOH HOH . F 3 HOH B 6 171 18 HOH HOH . F 3 HOH B 7 172 19 HOH HOH . F 3 HOH B 8 173 29 HOH HOH . F 3 HOH B 9 174 36 HOH HOH . F 3 HOH B 10 175 37 HOH HOH . F 3 HOH B 11 176 38 HOH HOH . F 3 HOH B 12 177 39 HOH HOH . F 3 HOH B 13 178 40 HOH HOH . F 3 HOH B 14 179 41 HOH HOH . F 3 HOH B 15 180 43 HOH HOH . F 3 HOH B 16 181 44 HOH HOH . F 3 HOH B 17 182 45 HOH HOH . F 3 HOH B 18 183 46 HOH HOH . F 3 HOH B 19 184 47 HOH HOH . F 3 HOH B 20 185 50 HOH HOH . F 3 HOH B 21 186 51 HOH HOH . F 3 HOH B 22 187 53 HOH HOH . F 3 HOH B 23 188 55 HOH HOH . F 3 HOH B 24 189 61 HOH HOH . F 3 HOH B 25 190 63 HOH HOH . F 3 HOH B 26 191 64 HOH HOH . F 3 HOH B 27 192 65 HOH HOH . F 3 HOH B 28 193 66 HOH HOH . F 3 HOH B 29 194 67 HOH HOH . F 3 HOH B 30 195 68 HOH HOH . F 3 HOH B 31 196 69 HOH HOH . F 3 HOH B 32 197 70 HOH HOH . F 3 HOH B 33 198 71 HOH HOH . F 3 HOH B 34 199 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 9CR . . . D 2 -10.786 5.431 49.842 1 39.21 ? C1 9CR 165 B 1 HETATM 2 C C2 9CR . . . D 2 -11.812 4.796 48.865 1 37.17 ? C2 9CR 165 B 1 HETATM 3 C C3 9CR . . . D 2 -11.213 3.683 48.053 1 38.62 ? C3 9CR 165 B 1 HETATM 4 C C4 9CR . . . D 2 -10.114 4.235 47.177 1 33.57 ? C4 9CR 165 B 1 HETATM 5 C C5 9CR . . . D 2 -9.215 5.212 47.879 1 38.5 ? C5 9CR 165 B 1 HETATM 6 C C6 9CR . . . D 2 -9.474 5.728 49.106 1 38.76 ? C6 9CR 165 B 1 HETATM 7 C C7 9CR . . . D 2 -8.472 6.617 49.696 1 36.52 ? C7 9CR 165 B 1 HETATM 8 C C8 9CR . . . D 2 -8.179 6.902 50.969 1 35.98 ? C8 9CR 165 B 1 HETATM 9 C C9 9CR . . . D 2 -7.132 7.816 51.401 1 33.36 ? C9 9CR 165 B 1 HETATM 10 C C10 9CR . . . D 2 -6.385 8.45 50.47 1 34.07 ? C10 9CR 165 B 1 HETATM 11 C C11 9CR . . . D 2 -5.262 9.322 50.697 1 35.66 ? C11 9CR 165 B 1 HETATM 12 C C12 9CR . . . D 2 -4.526 9.853 49.711 1 39.62 ? C12 9CR 165 B 1 HETATM 13 C C13 9CR . . . D 2 -3.349 10.692 49.86 1 40.27 ? C13 9CR 165 B 1 HETATM 14 C C14 9CR . . . D 2 -2.688 11.03 48.745 1 44.57 ? C14 9CR 165 B 1 HETATM 15 C C15 9CR . . . D 2 -1.503 11.884 48.603 1 45.09 ? C15 9CR 165 B 1 HETATM 16 C C16 9CR . . . D 2 -11.463 6.729 50.32 1 40.13 ? C16 9CR 165 B 1 HETATM 17 C C17 9CR . . . D 2 -10.554 4.504 51.037 1 39.78 ? C17 9CR 165 B 1 HETATM 18 C C18 9CR . . . D 2 -7.982 5.559 47.063 1 39.93 ? C18 9CR 165 B 1 HETATM 19 C C19 9CR . . . D 2 -6.891 7.984 52.875 1 37.05 ? C19 9CR 165 B 1 HETATM 20 C C20 9CR . . . D 2 -2.942 11.111 51.237 1 41.84 ? C20 9CR 165 B 1 HETATM 21 O O1 9CR . . . D 2 -1.042 11.892 47.365 1 46.99 ? O1 9CR 165 B 1 HETATM 22 O O2 9CR . . . D 2 -0.979 12.54 49.492 1 40.87 ? O2 9CR 165 B 1 HETATM 23 H H1 9CR . . . D 2 -12.208 5.52 48.153 1 0 ? H1 9CR 165 B 1 HETATM 24 H H2 9CR . . . D 2 -12.671 4.372 49.385 1 0 ? H2 9CR 165 B 1 HETATM 25 H H3 9CR . . . D 2 -11.985 3.233 47.428 1 0 ? H3 9CR 165 B 1 HETATM 26 H H4 9CR . . . D 2 -10.8 2.927 48.722 1 0 ? H4 9CR 165 B 1 HETATM 27 H H5 9CR . . . D 2 -10.479 4.77 46.3 1 0 ? H5 9CR 165 B 1 HETATM 28 H H6 9CR . . . D 2 -9.444 3.472 46.781 1 0 ? H6 9CR 165 B 1 HETATM 29 H H13 9CR . . . D 2 -10.821 7.228 51.046 1 0 ? H13 9CR 165 B 1 HETATM 30 H H14 9CR . . . D 2 -11.627 7.389 49.468 1 0 ? H14 9CR 165 B 1 HETATM 31 H H15 9CR . . . D 2 -12.42 6.491 50.785 1 0 ? H15 9CR 165 B 1 HETATM 32 H H16 9CR . . . D 2 -9.911 5.001 51.764 1 0 ? H16 9CR 165 B 1 HETATM 33 H H17 9CR . . . D 2 -11.51 4.264 51.503 1 0 ? H17 9CR 165 B 1 HETATM 34 H H18 9CR . . . D 2 -10.075 3.585 50.697 1 0 ? H18 9CR 165 B 1 HETATM 35 H H19 9CR . . . D 2 -7.452 6.385 47.538 1 0 ? H19 9CR 165 B 1 HETATM 36 H H20 9CR . . . D 2 -7.326 4.69 47.008 1 0 ? H20 9CR 165 B 1 HETATM 37 H H21 9CR . . . D 2 -8.282 5.852 46.057 1 0 ? H21 9CR 165 B 1 HETATM 38 H H22 9CR . . . D 2 -6.718 9.037 53.098 1 0 ? H22 9CR 165 B 1 HETATM 39 H H23 9CR . . . D 2 -7.763 7.635 53.428 1 0 ? H23 9CR 165 B 1 HETATM 40 H H24 9CR . . . D 2 -6.017 7.402 53.169 1 0 ? H24 9CR 165 B 1 HETATM 41 H H25 9CR . . . D 2 -2.555 12.13 51.208 1 0 ? H25 9CR 165 B 1 HETATM 42 H H26 9CR . . . D 2 -3.806 11.07 51.9 1 0 ? H26 9CR 165 B 1 HETATM 43 H H27 9CR . . . D 2 -2.168 10.439 51.608 1 0 ? H27 9CR 165 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #