data_1EQA # _model_server_result.job_id o7BZtNjtenrEuRvESdbFGg _model_server_result.datetime_utc '2024-11-24 23:49:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1eqa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":600}' # _entry.id 1EQA # _exptl.entry_id 1EQA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 298.275 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-METHYLGUANOSINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.06 _cell.angle_gamma 90 _cell.entry_id 1EQA _cell.length_a 84.345 _cell.length_b 67.857 _cell.length_c 79.682 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EQA _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H16 N5 O5 1' _chem_comp.formula_weight 298.275 _chem_comp.id MG7 _chem_comp.mon_nstd_flag . _chem_comp.name 7-METHYLGUANOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C8 MG7 sing 237 n y N9 C4 MG7 sing 238 n y N9 C1' MG7 sing 239 n n C8 N7 MG7 doub 240 n y C8 H8 MG7 sing 241 n n N7 C5 MG7 sing 242 n y N7 CN7 MG7 sing 243 n n C5 C6 MG7 sing 244 n n C5 C4 MG7 doub 245 n y C6 O6 MG7 doub 246 n n C6 N1 MG7 sing 247 n n N1 C2 MG7 sing 248 n n N1 HN1 MG7 sing 249 n n C2 N2 MG7 sing 250 n n C2 N3 MG7 doub 251 n n N2 HN21 MG7 sing 252 n n N2 HN22 MG7 sing 253 n n N3 C4 MG7 sing 254 n n O5' C5' MG7 sing 255 n n O5' HO5' MG7 sing 256 n n C5' C4' MG7 sing 257 n n C5' "H5'1" MG7 sing 258 n n C5' "H5'2" MG7 sing 259 n n C4' O4' MG7 sing 260 n n C4' C3' MG7 sing 261 n n C4' H4' MG7 sing 262 n n O4' C1' MG7 sing 263 n n C1' C2' MG7 sing 264 n n C1' H1' MG7 sing 265 n n CN7 H71 MG7 sing 266 n n CN7 H72 MG7 sing 267 n n CN7 H73 MG7 sing 268 n n C2' O2' MG7 sing 269 n n C2' C3' MG7 sing 270 n n C2' H2' MG7 sing 271 n n O2' HO2' MG7 sing 272 n n C3' O3' MG7 sing 273 n n C3' H3' MG7 sing 274 n n O3' HO3' MG7 sing 275 n n # _atom_sites.entry_id 1EQA _atom_sites.fract_transf_matrix[1][1] 0.011856 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00632 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014737 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014222 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 400 400 SAH SAH . C 3 MG7 A 1 600 600 MG7 MG7 . D 4 HOH A 1 601 1 HOH HOH . D 4 HOH A 2 602 2 HOH HOH . D 4 HOH A 3 603 3 HOH HOH . D 4 HOH A 4 604 4 HOH HOH . D 4 HOH A 5 605 5 HOH HOH . D 4 HOH A 6 606 6 HOH HOH . D 4 HOH A 7 607 7 HOH HOH . D 4 HOH A 8 608 8 HOH HOH . D 4 HOH A 9 609 9 HOH HOH . D 4 HOH A 10 610 10 HOH HOH . D 4 HOH A 11 611 11 HOH HOH . D 4 HOH A 12 612 12 HOH HOH . D 4 HOH A 13 613 13 HOH HOH . D 4 HOH A 14 614 14 HOH HOH . D 4 HOH A 15 615 15 HOH HOH . D 4 HOH A 16 616 16 HOH HOH . D 4 HOH A 17 617 17 HOH HOH . D 4 HOH A 18 618 18 HOH HOH . D 4 HOH A 19 619 19 HOH HOH . D 4 HOH A 20 620 20 HOH HOH . D 4 HOH A 21 621 21 HOH HOH . D 4 HOH A 22 622 22 HOH HOH . D 4 HOH A 23 623 23 HOH HOH . D 4 HOH A 24 624 24 HOH HOH . D 4 HOH A 25 625 25 HOH HOH . D 4 HOH A 26 626 26 HOH HOH . D 4 HOH A 27 627 27 HOH HOH . D 4 HOH A 28 628 28 HOH HOH . D 4 HOH A 29 629 29 HOH HOH . D 4 HOH A 30 630 30 HOH HOH . D 4 HOH A 31 631 31 HOH HOH . D 4 HOH A 32 632 32 HOH HOH . D 4 HOH A 33 633 33 HOH HOH . D 4 HOH A 34 634 34 HOH HOH . D 4 HOH A 35 635 35 HOH HOH . D 4 HOH A 36 636 36 HOH HOH . D 4 HOH A 37 637 37 HOH HOH . D 4 HOH A 38 638 38 HOH HOH . D 4 HOH A 39 639 39 HOH HOH . D 4 HOH A 40 640 40 HOH HOH . D 4 HOH A 41 641 41 HOH HOH . D 4 HOH A 42 642 42 HOH HOH . D 4 HOH A 43 643 43 HOH HOH . D 4 HOH A 44 644 44 HOH HOH . D 4 HOH A 45 645 45 HOH HOH . D 4 HOH A 46 646 46 HOH HOH . D 4 HOH A 47 647 47 HOH HOH . D 4 HOH A 48 648 48 HOH HOH . D 4 HOH A 49 649 49 HOH HOH . D 4 HOH A 50 650 50 HOH HOH . D 4 HOH A 51 651 51 HOH HOH . D 4 HOH A 52 652 52 HOH HOH . D 4 HOH A 53 653 53 HOH HOH . D 4 HOH A 54 654 54 HOH HOH . D 4 HOH A 55 655 55 HOH HOH . D 4 HOH A 56 656 56 HOH HOH . D 4 HOH A 57 657 57 HOH HOH . D 4 HOH A 58 658 58 HOH HOH . D 4 HOH A 59 659 59 HOH HOH . D 4 HOH A 60 660 60 HOH HOH . D 4 HOH A 61 661 61 HOH HOH . D 4 HOH A 62 662 62 HOH HOH . D 4 HOH A 63 663 63 HOH HOH . D 4 HOH A 64 664 64 HOH HOH . D 4 HOH A 65 665 65 HOH HOH . D 4 HOH A 66 666 66 HOH HOH . D 4 HOH A 67 667 67 HOH HOH . D 4 HOH A 68 668 68 HOH HOH . D 4 HOH A 69 669 69 HOH HOH . D 4 HOH A 70 670 70 HOH HOH . D 4 HOH A 71 671 71 HOH HOH . D 4 HOH A 72 672 72 HOH HOH . D 4 HOH A 73 673 73 HOH HOH . D 4 HOH A 74 674 74 HOH HOH . D 4 HOH A 75 675 75 HOH HOH . D 4 HOH A 76 676 76 HOH HOH . D 4 HOH A 77 677 77 HOH HOH . D 4 HOH A 78 678 78 HOH HOH . D 4 HOH A 79 679 79 HOH HOH . D 4 HOH A 80 680 80 HOH HOH . D 4 HOH A 81 681 81 HOH HOH . D 4 HOH A 82 682 82 HOH HOH . D 4 HOH A 83 683 83 HOH HOH . D 4 HOH A 84 684 84 HOH HOH . D 4 HOH A 85 685 85 HOH HOH . D 4 HOH A 86 686 86 HOH HOH . D 4 HOH A 87 687 87 HOH HOH . D 4 HOH A 88 688 88 HOH HOH . D 4 HOH A 89 689 89 HOH HOH . D 4 HOH A 90 690 90 HOH HOH . D 4 HOH A 91 691 91 HOH HOH . D 4 HOH A 92 692 92 HOH HOH . D 4 HOH A 93 693 93 HOH HOH . D 4 HOH A 94 694 94 HOH HOH . D 4 HOH A 95 695 95 HOH HOH . D 4 HOH A 96 696 96 HOH HOH . D 4 HOH A 97 697 97 HOH HOH . D 4 HOH A 98 698 98 HOH HOH . D 4 HOH A 99 699 99 HOH HOH . D 4 HOH A 100 700 100 HOH HOH . D 4 HOH A 101 701 101 HOH HOH . D 4 HOH A 102 702 102 HOH HOH . D 4 HOH A 103 703 103 HOH HOH . D 4 HOH A 104 704 104 HOH HOH . D 4 HOH A 105 705 105 HOH HOH . D 4 HOH A 106 706 106 HOH HOH . D 4 HOH A 107 707 107 HOH HOH . D 4 HOH A 108 708 108 HOH HOH . D 4 HOH A 109 709 109 HOH HOH . D 4 HOH A 110 710 110 HOH HOH . D 4 HOH A 111 711 111 HOH HOH . D 4 HOH A 112 712 112 HOH HOH . D 4 HOH A 113 713 113 HOH HOH . D 4 HOH A 114 714 114 HOH HOH . D 4 HOH A 115 715 115 HOH HOH . D 4 HOH A 116 716 116 HOH HOH . D 4 HOH A 117 717 117 HOH HOH . D 4 HOH A 118 718 118 HOH HOH . D 4 HOH A 119 719 119 HOH HOH . D 4 HOH A 120 720 120 HOH HOH . D 4 HOH A 121 721 121 HOH HOH . D 4 HOH A 122 722 122 HOH HOH . D 4 HOH A 123 723 123 HOH HOH . D 4 HOH A 124 724 124 HOH HOH . D 4 HOH A 125 725 125 HOH HOH . D 4 HOH A 126 726 126 HOH HOH . D 4 HOH A 127 727 127 HOH HOH . D 4 HOH A 128 728 128 HOH HOH . D 4 HOH A 129 729 129 HOH HOH . D 4 HOH A 130 730 130 HOH HOH . D 4 HOH A 131 731 131 HOH HOH . D 4 HOH A 132 732 132 HOH HOH . D 4 HOH A 133 733 133 HOH HOH . D 4 HOH A 134 734 134 HOH HOH . D 4 HOH A 135 735 135 HOH HOH . D 4 HOH A 136 736 136 HOH HOH . D 4 HOH A 137 737 137 HOH HOH . D 4 HOH A 138 738 138 HOH HOH . D 4 HOH A 139 739 139 HOH HOH . D 4 HOH A 140 740 140 HOH HOH . D 4 HOH A 141 741 141 HOH HOH . D 4 HOH A 142 742 142 HOH HOH . D 4 HOH A 143 743 143 HOH HOH . D 4 HOH A 144 744 144 HOH HOH . D 4 HOH A 145 745 145 HOH HOH . D 4 HOH A 146 746 146 HOH HOH . D 4 HOH A 147 747 147 HOH HOH . D 4 HOH A 148 748 148 HOH HOH . D 4 HOH A 149 749 149 HOH HOH . D 4 HOH A 150 750 150 HOH HOH . D 4 HOH A 151 751 151 HOH HOH . D 4 HOH A 152 752 152 HOH HOH . D 4 HOH A 153 753 153 HOH HOH . D 4 HOH A 154 754 154 HOH HOH . D 4 HOH A 155 755 155 HOH HOH . D 4 HOH A 156 756 156 HOH HOH . D 4 HOH A 157 757 157 HOH HOH . D 4 HOH A 158 758 158 HOH HOH . D 4 HOH A 159 759 159 HOH HOH . D 4 HOH A 160 760 160 HOH HOH . D 4 HOH A 161 761 161 HOH HOH . D 4 HOH A 162 762 162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 MG7 . . . C 3 16.446 12.002 22.801 1 75.41 ? N9 MG7 600 A 1 HETATM 2 C C8 MG7 . . . C 3 15.694 13.058 23.227 1 72.25 ? C8 MG7 600 A 1 HETATM 3 N N7 MG7 . . . C 3 15.873 14.141 22.555 1 70.01 ? N7 MG7 600 A 1 HETATM 4 C C5 MG7 . . . C 3 16.822 13.796 21.612 1 69.09 ? C5 MG7 600 A 1 HETATM 5 C C6 MG7 . . . C 3 17.406 14.586 20.603 1 67.73 ? C6 MG7 600 A 1 HETATM 6 O O6 MG7 . . . C 3 17.177 15.761 20.351 1 63.05 ? O6 MG7 600 A 1 HETATM 7 N N1 MG7 . . . C 3 18.323 13.877 19.863 1 69.07 ? N1 MG7 600 A 1 HETATM 8 C C2 MG7 . . . C 3 18.659 12.549 20.047 1 69.24 ? C2 MG7 600 A 1 HETATM 9 N N2 MG7 . . . C 3 19.566 12.028 19.22 1 66.18 ? N2 MG7 600 A 1 HETATM 10 N N3 MG7 . . . C 3 18.098 11.799 21.006 1 69.44 ? N3 MG7 600 A 1 HETATM 11 C C4 MG7 . . . C 3 17.19 12.484 21.749 1 71.16 ? C4 MG7 600 A 1 HETATM 12 O O5' MG7 . . . C 3 13.186 11.137 25.618 1 92.68 ? O5' MG7 600 A 1 HETATM 13 C C5' MG7 . . . C 3 13.555 9.767 25.388 1 87.55 ? C5' MG7 600 A 1 HETATM 14 C C4' MG7 . . . C 3 14.926 9.591 24.735 1 87.36 ? C4' MG7 600 A 1 HETATM 15 O O4' MG7 . . . C 3 14.995 10.324 23.512 1 85.17 ? O4' MG7 600 A 1 HETATM 16 C C1' MG7 . . . C 3 16.388 10.613 23.287 1 82.53 ? C1' MG7 600 A 1 HETATM 17 C CN7 MG7 . . . C 3 15.161 15.379 22.787 1 67.31 ? CN7 MG7 600 A 1 HETATM 18 C C2' MG7 . . . C 3 17.15 10.395 24.599 1 86.58 ? C2' MG7 600 A 1 HETATM 19 O O2' MG7 . . . C 3 17.965 9.23 24.424 1 89.6 ? O2' MG7 600 A 1 HETATM 20 C C3' MG7 . . . C 3 16.027 10.177 25.596 1 88.05 ? C3' MG7 600 A 1 HETATM 21 O O3' MG7 . . . C 3 16.431 9.245 26.616 1 89.49 ? O3' MG7 600 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 21 #