data_1ERM # _model_server_result.job_id qHAEMKPKuifxnLZW10TwZg _model_server_result.datetime_utc '2025-01-11 03:48:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1erm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 1ERM # _exptl.entry_id 1ERM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 251.044 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1(R)-1-ACETAMIDO-2-(3-CARBOXYPHENYL)ETHYL BORONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ERM _cell.length_a 63.03 _cell.length_b 89.06 _cell.length_c 42.16 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ERM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 52 A CYS 77 1_555 A SG CYS 98 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale 'Covalent link with BJI' covale1 A OG SER 45 A SER 70 1_555 B B BJI . A BJI 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? covale ? covale2 A C ALA 188 A ALA 213 1_555 A N BHD 189 A BHD 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale3 A C BHD 189 A BHD 214 1_555 A N LYS 190 A LYS 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? # _chem_comp.formula 'C11 H14 B N O5' _chem_comp.formula_weight 251.044 _chem_comp.id BJI _chem_comp.mon_nstd_flag . _chem_comp.name '1(R)-1-ACETAMIDO-2-(3-CARBOXYPHENYL)ETHYL BORONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 BJI sing 86 n n C2 C5 BJI sing 87 n n C2 H21 BJI sing 88 n n C2 H22 BJI sing 89 n n C1 N1 BJI sing 90 n n C1 B BJI sing 91 n n C1 H1 BJI sing 92 n n N1 C3 BJI sing 93 n n N1 HN1 BJI sing 94 n n C3 C4 BJI sing 95 n n C3 O2 BJI doub 96 n n C4 H41 BJI sing 97 n n C4 H42 BJI sing 98 n n C4 H43 BJI sing 99 n n C11 O3 BJI sing 100 n n C11 O4 BJI doub 101 n n C11 C9 BJI sing 102 n n O3 HO3 BJI sing 103 n n B OB1 BJI sing 104 n n B OB2 BJI sing 105 n n OB1 HOB1 BJI sing 106 n n C6 C5 BJI doub 107 n y C6 C7 BJI sing 108 n y C6 H6 BJI sing 109 n n C5 C10 BJI sing 110 n y C7 C8 BJI doub 111 n y C7 H7 BJI sing 112 n n C10 C9 BJI doub 113 n y C10 H10 BJI sing 114 n n C8 C9 BJI sing 115 n y C8 H8 BJI sing 116 n n OB2 HOB2 BJI sing 117 n n # _atom_sites.entry_id 1ERM _atom_sites.fract_transf_matrix[1][1] 0.015865 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011228 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023719 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BJI A 1 500 70 BJI BJI . C 3 HOH A 1 300 300 HOH WAT . C 3 HOH A 2 301 301 HOH WAT . C 3 HOH A 3 302 302 HOH WAT . C 3 HOH A 4 303 303 HOH WAT . C 3 HOH A 5 304 304 HOH WAT . C 3 HOH A 6 305 305 HOH WAT . C 3 HOH A 7 306 306 HOH WAT . C 3 HOH A 8 307 307 HOH WAT . C 3 HOH A 9 308 308 HOH WAT . C 3 HOH A 10 309 309 HOH WAT . C 3 HOH A 11 310 310 HOH WAT . C 3 HOH A 12 311 311 HOH WAT . C 3 HOH A 13 312 312 HOH WAT . C 3 HOH A 14 314 314 HOH WAT . C 3 HOH A 15 316 316 HOH WAT . C 3 HOH A 16 317 317 HOH WAT . C 3 HOH A 17 318 318 HOH WAT . C 3 HOH A 18 319 319 HOH WAT . C 3 HOH A 19 320 320 HOH WAT . C 3 HOH A 20 321 321 HOH WAT . C 3 HOH A 21 322 322 HOH WAT . C 3 HOH A 22 323 323 HOH WAT . C 3 HOH A 23 324 324 HOH WAT . C 3 HOH A 24 325 325 HOH WAT . C 3 HOH A 25 326 326 HOH WAT . C 3 HOH A 26 327 327 HOH WAT . C 3 HOH A 27 328 328 HOH WAT . C 3 HOH A 28 329 329 HOH WAT . C 3 HOH A 29 330 330 HOH WAT . C 3 HOH A 30 333 333 HOH WAT . C 3 HOH A 31 334 334 HOH WAT . C 3 HOH A 32 336 336 HOH WAT . C 3 HOH A 33 337 337 HOH WAT . C 3 HOH A 34 339 339 HOH WAT . C 3 HOH A 35 341 341 HOH WAT . C 3 HOH A 36 342 342 HOH WAT . C 3 HOH A 37 346 346 HOH WAT . C 3 HOH A 38 348 348 HOH WAT . C 3 HOH A 39 350 350 HOH WAT . C 3 HOH A 40 351 351 HOH WAT . C 3 HOH A 41 352 352 HOH WAT . C 3 HOH A 42 354 354 HOH WAT . C 3 HOH A 43 355 355 HOH WAT . C 3 HOH A 44 356 356 HOH WAT . C 3 HOH A 45 357 357 HOH WAT . C 3 HOH A 46 358 358 HOH WAT . C 3 HOH A 47 359 359 HOH WAT . C 3 HOH A 48 360 360 HOH WAT . C 3 HOH A 49 361 361 HOH WAT . C 3 HOH A 50 362 362 HOH WAT . C 3 HOH A 51 363 363 HOH WAT . C 3 HOH A 52 364 364 HOH WAT . C 3 HOH A 53 365 365 HOH WAT . C 3 HOH A 54 368 368 HOH WAT . C 3 HOH A 55 369 369 HOH WAT . C 3 HOH A 56 370 370 HOH WAT . C 3 HOH A 57 371 371 HOH WAT . C 3 HOH A 58 372 372 HOH WAT . C 3 HOH A 59 373 373 HOH WAT . C 3 HOH A 60 374 374 HOH WAT . C 3 HOH A 61 375 375 HOH WAT . C 3 HOH A 62 376 376 HOH WAT . C 3 HOH A 63 377 377 HOH WAT . C 3 HOH A 64 378 378 HOH WAT . C 3 HOH A 65 380 380 HOH WAT . C 3 HOH A 66 381 381 HOH WAT . C 3 HOH A 67 382 382 HOH WAT . C 3 HOH A 68 383 383 HOH WAT . C 3 HOH A 69 384 384 HOH WAT . C 3 HOH A 70 386 386 HOH WAT . C 3 HOH A 71 387 387 HOH WAT . C 3 HOH A 72 388 388 HOH WAT . C 3 HOH A 73 389 389 HOH WAT . C 3 HOH A 74 390 390 HOH WAT . C 3 HOH A 75 392 392 HOH WAT . C 3 HOH A 76 394 394 HOH WAT . C 3 HOH A 77 399 399 HOH WAT . C 3 HOH A 78 400 400 HOH WAT . C 3 HOH A 79 401 401 HOH WAT . C 3 HOH A 80 402 402 HOH WAT . C 3 HOH A 81 403 403 HOH WAT . C 3 HOH A 82 404 404 HOH WAT . C 3 HOH A 83 406 406 HOH WAT . C 3 HOH A 84 408 408 HOH WAT . C 3 HOH A 85 411 411 HOH WAT . C 3 HOH A 86 412 412 HOH WAT . C 3 HOH A 87 413 413 HOH WAT . C 3 HOH A 88 414 414 HOH WAT . C 3 HOH A 89 417 417 HOH WAT . C 3 HOH A 90 418 418 HOH WAT . C 3 HOH A 91 419 419 HOH WAT . C 3 HOH A 92 420 420 HOH WAT . C 3 HOH A 93 421 421 HOH WAT . C 3 HOH A 94 422 422 HOH WAT . C 3 HOH A 95 424 424 HOH WAT . C 3 HOH A 96 425 425 HOH WAT . C 3 HOH A 97 428 428 HOH WAT . C 3 HOH A 98 430 430 HOH WAT . C 3 HOH A 99 431 431 HOH WAT . C 3 HOH A 100 432 432 HOH WAT . C 3 HOH A 101 433 433 HOH WAT . C 3 HOH A 102 435 435 HOH WAT . C 3 HOH A 103 436 436 HOH WAT . C 3 HOH A 104 437 437 HOH WAT . C 3 HOH A 105 438 438 HOH WAT . C 3 HOH A 106 439 439 HOH WAT . C 3 HOH A 107 440 440 HOH WAT . C 3 HOH A 108 441 441 HOH WAT . C 3 HOH A 109 442 442 HOH WAT . C 3 HOH A 110 444 444 HOH WAT . C 3 HOH A 111 447 447 HOH WAT . C 3 HOH A 112 454 454 HOH WAT . C 3 HOH A 113 455 455 HOH WAT . C 3 HOH A 114 458 458 HOH WAT . C 3 HOH A 115 459 459 HOH WAT . C 3 HOH A 116 460 460 HOH WAT . C 3 HOH A 117 461 461 HOH WAT . C 3 HOH A 118 464 464 HOH WAT . C 3 HOH A 119 466 466 HOH WAT . C 3 HOH A 120 467 467 HOH WAT . C 3 HOH A 121 468 468 HOH WAT . C 3 HOH A 122 469 469 HOH WAT . C 3 HOH A 123 470 470 HOH WAT . C 3 HOH A 124 471 471 HOH WAT . C 3 HOH A 125 472 472 HOH WAT . C 3 HOH A 126 473 473 HOH WAT . C 3 HOH A 127 474 474 HOH WAT . C 3 HOH A 128 475 475 HOH WAT . C 3 HOH A 129 476 476 HOH WAT . C 3 HOH A 130 477 477 HOH WAT . C 3 HOH A 131 478 478 HOH WAT . C 3 HOH A 132 479 479 HOH WAT . C 3 HOH A 133 480 480 HOH WAT . C 3 HOH A 134 481 481 HOH WAT . C 3 HOH A 135 482 482 HOH WAT . C 3 HOH A 136 484 484 HOH WAT . C 3 HOH A 137 485 485 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 BJI . . . B 2 40.907 38.346 31.743 1 15.2 ? C2 BJI 500 A 1 HETATM 2 C C1 BJI . . . B 2 39.629 37.924 32.442 1 13.99 ? C1 BJI 500 A 1 HETATM 3 N N1 BJI . . . B 2 40.035 37.495 33.79 1 16.12 ? N1 BJI 500 A 1 HETATM 4 C C3 BJI . . . B 2 40.483 38.274 34.796 1 18.75 ? C3 BJI 500 A 1 HETATM 5 C C4 BJI . . . B 2 40.842 37.532 36.103 1 16.07 ? C4 BJI 500 A 1 HETATM 6 O O2 BJI . . . B 2 40.655 39.499 34.7 1 19.44 ? O2 BJI 500 A 1 HETATM 7 C C11 BJI . . . B 2 42.028 33.809 29.21 1 20.05 ? C11 BJI 500 A 1 HETATM 8 O O3 BJI . . . B 2 41.473 34.263 28.2 1 19.82 ? O3 BJI 500 A 1 HETATM 9 O O4 BJI . . . B 2 42.525 32.687 29.288 1 22.32 ? O4 BJI 500 A 1 HETATM 10 B B BJI . . . B 2 38.257 36.898 31.884 1 13.94 ? B BJI 500 A 1 HETATM 11 O OB1 BJI . . . B 2 38.601 35.441 32.339 1 15.91 ? OB1 BJI 500 A 1 HETATM 12 C C6 BJI . . . B 2 42.708 36.828 32.444 1 19.19 ? C6 BJI 500 A 1 HETATM 13 C C5 BJI . . . B 2 41.54 36.96 31.5 1 17.24 ? C5 BJI 500 A 1 HETATM 14 C C7 BJI . . . B 2 43.672 35.646 32.32 1 17.22 ? C7 BJI 500 A 1 HETATM 15 C C10 BJI . . . B 2 41.337 35.911 30.438 1 17.33 ? C10 BJI 500 A 1 HETATM 16 C C8 BJI . . . B 2 43.409 34.551 31.309 1 16.85 ? C8 BJI 500 A 1 HETATM 17 C C9 BJI . . . B 2 42.275 34.759 30.358 1 18.78 ? C9 BJI 500 A 1 HETATM 18 O OB2 BJI . . . B 2 37.03 37.385 32.646 1 13.05 ? OB2 BJI 500 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 18 #