data_1ETB # _model_server_result.job_id 4HgM0bTjFIVZuTrz-3JNVg _model_server_result.datetime_utc '2024-10-13 04:17:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1etb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":129}' # _entry.id 1ETB # _exptl.entry_id 1ETB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 776.87 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3,5,3',5'-TETRAIODO-L-THYRONINE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ETB _cell.length_a 43.72 _cell.length_b 86.09 _cell.length_c 65.79 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ETB _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 43.72 86.09 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B NZ LYS 15 2 LYS 15 1_555 D C7 T44 . 2 T44 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.733 ? covale ? covale2 B OE2 GLU 54 2 GLU 54 1_555 D N T44 . 2 T44 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.84 ? covale ? covale3 B OE2 GLU 54 2 GLU 54 1_555 D CA T44 . 2 T44 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? # _chem_comp.formula 'C15 H11 I4 N O4' _chem_comp.formula_weight 776.87 _chem_comp.id T44 _chem_comp.mon_nstd_flag . _chem_comp.name "3,5,3',5'-TETRAIODO-L-THYRONINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 T44 doub 271 n y C1 C6 T44 sing 272 n y C1 C7 T44 sing 273 n n C2 C3 T44 sing 274 n y C2 H1 T44 sing 275 n n C3 C4 T44 doub 276 n y C3 I3 T44 sing 277 n n C4 C5 T44 sing 278 n y C4 O4 T44 sing 279 n n C5 C6 T44 doub 280 n y C5 I5 T44 sing 281 n n C6 H6 T44 sing 282 n n C7 CA T44 sing 283 n n C7 H71 T44 sing 284 n n C7 H72 T44 sing 285 n n CA C T44 sing 286 n n CA N T44 sing 287 n n CA HA T44 sing 288 n n C O T44 doub 289 n n C OXT T44 sing 290 n n C1' C2' T44 doub 291 n y C1' C6' T44 sing 292 n y C1' O4 T44 sing 293 n n C2' C3' T44 sing 294 n y C2' H2' T44 sing 295 n n C3' C4' T44 doub 296 n y C3' I3' T44 sing 297 n n C4' C5' T44 sing 298 n y C4' O4' T44 sing 299 n n C5' C6' T44 doub 300 n y C5' I5' T44 sing 301 n n C6' H6' T44 sing 302 n n N H T44 sing 303 n n N H2 T44 sing 304 n n O4' HO4' T44 sing 305 n n OXT HXT T44 sing 306 n n # _atom_sites.entry_id 1ETB _atom_sites.fract_transf_matrix[1][1] 0.022873 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011616 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0152 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 T44 1 1 128 128 T44 T44 . D 2 T44 2 1 129 129 T44 T44 . E 3 HOH 1 1 129 1 HOH HOH . E 3 HOH 1 2 130 2 HOH HOH . E 3 HOH 1 3 131 3 HOH HOH . E 3 HOH 1 4 132 5 HOH HOH . E 3 HOH 1 5 133 6 HOH HOH . E 3 HOH 1 6 134 7 HOH HOH . E 3 HOH 1 7 135 8 HOH HOH . E 3 HOH 1 8 136 11 HOH HOH . E 3 HOH 1 9 137 12 HOH HOH . E 3 HOH 1 10 138 13 HOH HOH . E 3 HOH 1 11 139 14 HOH HOH . E 3 HOH 1 12 140 15 HOH HOH . E 3 HOH 1 13 141 16 HOH HOH . E 3 HOH 1 14 142 17 HOH HOH . E 3 HOH 1 15 143 18 HOH HOH . E 3 HOH 1 16 144 22 HOH HOH . E 3 HOH 1 17 145 23 HOH HOH . E 3 HOH 1 18 146 30 HOH HOH . E 3 HOH 1 19 147 31 HOH HOH . E 3 HOH 1 20 148 33 HOH HOH . E 3 HOH 1 21 149 40 HOH HOH . E 3 HOH 1 22 150 41 HOH HOH . E 3 HOH 1 23 151 42 HOH HOH . E 3 HOH 1 24 152 44 HOH HOH . E 3 HOH 1 25 153 45 HOH HOH . E 3 HOH 1 26 154 46 HOH HOH . E 3 HOH 1 27 155 47 HOH HOH . E 3 HOH 1 28 156 49 HOH HOH . E 3 HOH 1 29 157 50 HOH HOH . E 3 HOH 1 30 158 53 HOH HOH . E 3 HOH 1 31 159 54 HOH HOH . E 3 HOH 1 32 160 61 HOH HOH . E 3 HOH 1 33 161 64 HOH HOH . E 3 HOH 1 34 162 66 HOH HOH . E 3 HOH 1 35 163 68 HOH HOH . E 3 HOH 1 36 164 69 HOH HOH . E 3 HOH 1 37 165 70 HOH HOH . E 3 HOH 1 38 166 71 HOH HOH . E 3 HOH 1 39 167 73 HOH HOH . E 3 HOH 1 40 168 77 HOH HOH . E 3 HOH 1 41 169 78 HOH HOH . E 3 HOH 1 42 170 81 HOH HOH . E 3 HOH 1 43 171 84 HOH HOH . E 3 HOH 1 44 172 86 HOH HOH . E 3 HOH 1 45 173 87 HOH HOH . E 3 HOH 1 46 174 88 HOH HOH . E 3 HOH 1 47 175 89 HOH HOH . E 3 HOH 1 48 176 92 HOH HOH . E 3 HOH 1 49 177 94 HOH HOH . E 3 HOH 1 50 178 95 HOH HOH . E 3 HOH 1 51 179 96 HOH HOH . E 3 HOH 1 52 180 99 HOH HOH . E 3 HOH 1 53 181 100 HOH HOH . E 3 HOH 1 54 182 101 HOH HOH . E 3 HOH 1 55 183 102 HOH HOH . E 3 HOH 1 56 184 104 HOH HOH . E 3 HOH 1 57 185 105 HOH HOH . E 3 HOH 1 58 186 106 HOH HOH . E 3 HOH 1 59 187 107 HOH HOH . E 3 HOH 1 60 188 108 HOH HOH . E 3 HOH 1 61 189 116 HOH HOH . E 3 HOH 1 62 190 117 HOH HOH . E 3 HOH 1 63 191 118 HOH HOH . E 3 HOH 1 64 192 119 HOH HOH . E 3 HOH 1 65 193 125 HOH HOH . E 3 HOH 1 66 194 129 HOH HOH . E 3 HOH 1 67 195 132 HOH HOH . E 3 HOH 1 68 196 133 HOH HOH . E 3 HOH 1 69 197 134 HOH HOH . E 3 HOH 1 70 198 135 HOH HOH . E 3 HOH 1 71 199 137 HOH HOH . E 3 HOH 1 72 200 138 HOH HOH . E 3 HOH 1 73 201 139 HOH HOH . E 3 HOH 1 74 202 140 HOH HOH . E 3 HOH 1 75 203 141 HOH HOH . E 3 HOH 1 76 204 142 HOH HOH . E 3 HOH 1 77 205 143 HOH HOH . E 3 HOH 1 78 206 144 HOH HOH . E 3 HOH 1 79 207 145 HOH HOH . E 3 HOH 1 80 208 146 HOH HOH . E 3 HOH 1 81 209 147 HOH HOH . E 3 HOH 1 82 210 154 HOH HOH . E 3 HOH 1 83 211 161 HOH HOH . E 3 HOH 1 84 212 162 HOH HOH . E 3 HOH 1 85 213 165 HOH HOH . E 3 HOH 1 86 214 166 HOH HOH . E 3 HOH 1 87 215 168 HOH HOH . E 3 HOH 1 88 216 169 HOH HOH . E 3 HOH 1 89 217 172 HOH HOH . F 3 HOH 2 1 130 4 HOH HOH . F 3 HOH 2 2 131 9 HOH HOH . F 3 HOH 2 3 132 10 HOH HOH . F 3 HOH 2 4 133 19 HOH HOH . F 3 HOH 2 5 134 20 HOH HOH . F 3 HOH 2 6 135 21 HOH HOH . F 3 HOH 2 7 136 24 HOH HOH . F 3 HOH 2 8 137 25 HOH HOH . F 3 HOH 2 9 138 26 HOH HOH . F 3 HOH 2 10 139 27 HOH HOH . F 3 HOH 2 11 140 28 HOH HOH . F 3 HOH 2 12 141 29 HOH HOH . F 3 HOH 2 13 142 32 HOH HOH . F 3 HOH 2 14 143 34 HOH HOH . F 3 HOH 2 15 144 35 HOH HOH . F 3 HOH 2 16 145 36 HOH HOH . F 3 HOH 2 17 146 37 HOH HOH . F 3 HOH 2 18 147 38 HOH HOH . F 3 HOH 2 19 148 39 HOH HOH . F 3 HOH 2 20 149 43 HOH HOH . F 3 HOH 2 21 150 48 HOH HOH . F 3 HOH 2 22 151 51 HOH HOH . F 3 HOH 2 23 152 52 HOH HOH . F 3 HOH 2 24 153 55 HOH HOH . F 3 HOH 2 25 154 56 HOH HOH . F 3 HOH 2 26 155 57 HOH HOH . F 3 HOH 2 27 156 58 HOH HOH . F 3 HOH 2 28 157 59 HOH HOH . F 3 HOH 2 29 158 60 HOH HOH . F 3 HOH 2 30 159 62 HOH HOH . F 3 HOH 2 31 160 63 HOH HOH . F 3 HOH 2 32 161 65 HOH HOH . F 3 HOH 2 33 162 67 HOH HOH . F 3 HOH 2 34 163 72 HOH HOH . F 3 HOH 2 35 164 74 HOH HOH . F 3 HOH 2 36 165 75 HOH HOH . F 3 HOH 2 37 166 76 HOH HOH . F 3 HOH 2 38 167 79 HOH HOH . F 3 HOH 2 39 168 80 HOH HOH . F 3 HOH 2 40 169 82 HOH HOH . F 3 HOH 2 41 170 83 HOH HOH . F 3 HOH 2 42 171 85 HOH HOH . F 3 HOH 2 43 172 90 HOH HOH . F 3 HOH 2 44 173 91 HOH HOH . F 3 HOH 2 45 174 93 HOH HOH . F 3 HOH 2 46 175 97 HOH HOH . F 3 HOH 2 47 176 98 HOH HOH . F 3 HOH 2 48 177 103 HOH HOH . F 3 HOH 2 49 178 109 HOH HOH . F 3 HOH 2 50 179 110 HOH HOH . F 3 HOH 2 51 180 111 HOH HOH . F 3 HOH 2 52 181 112 HOH HOH . F 3 HOH 2 53 182 113 HOH HOH . F 3 HOH 2 54 183 114 HOH HOH . F 3 HOH 2 55 184 115 HOH HOH . F 3 HOH 2 56 185 120 HOH HOH . F 3 HOH 2 57 186 121 HOH HOH . F 3 HOH 2 58 187 122 HOH HOH . F 3 HOH 2 59 188 123 HOH HOH . F 3 HOH 2 60 189 124 HOH HOH . F 3 HOH 2 61 190 126 HOH HOH . F 3 HOH 2 62 191 127 HOH HOH . F 3 HOH 2 63 192 128 HOH HOH . F 3 HOH 2 64 193 130 HOH HOH . F 3 HOH 2 65 194 131 HOH HOH . F 3 HOH 2 66 195 136 HOH HOH . F 3 HOH 2 67 196 148 HOH HOH . F 3 HOH 2 68 197 149 HOH HOH . F 3 HOH 2 69 198 150 HOH HOH . F 3 HOH 2 70 199 151 HOH HOH . F 3 HOH 2 71 200 152 HOH HOH . F 3 HOH 2 72 201 153 HOH HOH . F 3 HOH 2 73 202 155 HOH HOH . F 3 HOH 2 74 203 156 HOH HOH . F 3 HOH 2 75 204 157 HOH HOH . F 3 HOH 2 76 205 158 HOH HOH . F 3 HOH 2 77 206 159 HOH HOH . F 3 HOH 2 78 207 160 HOH HOH . F 3 HOH 2 79 208 163 HOH HOH . F 3 HOH 2 80 209 164 HOH HOH . F 3 HOH 2 81 210 167 HOH HOH . F 3 HOH 2 82 211 170 HOH HOH . F 3 HOH 2 83 212 171 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 T44 . . . D 2 19.981 42.051 64.921 0.25 30 ? C1 T44 129 2 1 HETATM 2 C C2 T44 . . . D 2 19.617 43.118 64.168 0.25 30 ? C2 T44 129 2 1 HETATM 3 C C3 T44 . . . D 2 20.334 43.622 63.116 0.25 30 ? C3 T44 129 2 1 HETATM 4 C C4 T44 . . . D 2 21.552 43.114 62.674 0.25 30 ? C4 T44 129 2 1 HETATM 5 C C5 T44 . . . D 2 21.926 42.02 63.449 0.25 30 ? C5 T44 129 2 1 HETATM 6 C C6 T44 . . . D 2 21.181 41.516 64.514 0.25 30 ? C6 T44 129 2 1 HETATM 7 C C7 T44 . . . D 2 19.017 41.586 66.011 0.25 30 ? C7 T44 129 2 1 HETATM 8 C CA T44 . . . D 2 19.401 41.075 67.421 0.25 30 ? CA T44 129 2 1 HETATM 9 C C T44 . . . D 2 20.589 41.69 68.145 0.25 30 ? C T44 129 2 1 HETATM 10 C C1' T44 . . . D 2 21.921 43.426 60.262 0.25 30 ? C1' T44 129 2 1 HETATM 11 C C2' T44 . . . D 2 22.285 44.219 59.191 0.25 30 ? C2' T44 129 2 1 HETATM 12 C C3' T44 . . . D 2 21.845 44.006 57.888 0.25 30 ? C3' T44 129 2 1 HETATM 13 C C4' T44 . . . D 2 20.989 42.952 57.568 0.25 30 ? C4' T44 129 2 1 HETATM 14 C C5' T44 . . . D 2 20.639 42.171 58.653 0.25 30 ? C5' T44 129 2 1 HETATM 15 C C6' T44 . . . D 2 21.091 42.4 59.919 0.25 30 ? C6' T44 129 2 1 HETATM 16 N N T44 . . . D 2 18.533 41.758 68.339 0.25 30 ? N T44 129 2 1 HETATM 17 O O4 T44 . . . D 2 22.287 43.624 61.591 0.25 30 ? O4 T44 129 2 1 HETATM 18 O O4' T44 . . . D 2 20.504 42.679 56.304 0.25 30 ? O4' T44 129 2 1 HETATM 19 O O T44 . . . D 2 20.817 42.885 67.999 0.25 30 ? O T44 129 2 1 HETATM 20 O OXT T44 . . . D 2 21.061 41.018 69.058 0.25 30 ? OXT T44 129 2 1 HETATM 21 I I3 T44 . . . D 2 19.388 45.14 62.165 0.25 32.65 ? I3 T44 129 2 1 HETATM 22 I I3' T44 . . . D 2 22.453 45.275 56.381 0.25 26.78 ? I3' T44 129 2 1 HETATM 23 I I5 T44 . . . D 2 23.636 41.012 62.974 0.25 28.8 ? I5 T44 129 2 1 HETATM 24 I I5' T44 . . . D 2 19.34 40.61 58.455 0.25 22.89 ? I5' T44 129 2 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 24 #