data_1EUF # _model_server_result.job_id TGbkS1fkhnbgu5OeFPkdpA _model_server_result.datetime_utc '2025-02-05 07:43:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1euf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 1EUF # _exptl.entry_id 1EUF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1EUF _cell.length_a 100.117 _cell.length_b 100.117 _cell.length_c 39.753 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EUF _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 42 1_555 A SG CYS 45 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 122 A CYS 136 1_555 A SG CYS 188 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 153 A CYS 168 1_555 A SG CYS 167 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 51 A ASN 65 1_555 B C1 NAG . A NAG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1EUF _atom_sites.fract_transf_matrix[1][1] 0.009988 _atom_sites.fract_transf_matrix[1][2] 0.005767 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011534 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025155 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 500 500 NAG NAG . C 3 PO4 A 1 600 600 PO4 PO4 . D 4 HOH A 1 300 300 HOH WAT . D 4 HOH A 2 301 301 HOH WAT . D 4 HOH A 3 302 302 HOH WAT . D 4 HOH A 4 303 303 HOH WAT . D 4 HOH A 5 304 304 HOH WAT . D 4 HOH A 6 305 305 HOH WAT . D 4 HOH A 7 306 306 HOH WAT . D 4 HOH A 8 307 307 HOH WAT . D 4 HOH A 9 308 308 HOH WAT . D 4 HOH A 10 309 309 HOH WAT . D 4 HOH A 11 310 310 HOH WAT . D 4 HOH A 12 311 311 HOH WAT . D 4 HOH A 13 312 312 HOH WAT . D 4 HOH A 14 313 313 HOH WAT . D 4 HOH A 15 314 314 HOH WAT . D 4 HOH A 16 315 315 HOH WAT . D 4 HOH A 17 316 316 HOH WAT . D 4 HOH A 18 317 317 HOH WAT . D 4 HOH A 19 318 318 HOH WAT . D 4 HOH A 20 319 319 HOH WAT . D 4 HOH A 21 320 320 HOH WAT . D 4 HOH A 22 321 321 HOH WAT . D 4 HOH A 23 322 322 HOH WAT . D 4 HOH A 24 323 323 HOH WAT . D 4 HOH A 25 324 324 HOH WAT . D 4 HOH A 26 325 325 HOH WAT . D 4 HOH A 27 326 326 HOH WAT . D 4 HOH A 28 327 327 HOH WAT . D 4 HOH A 29 328 328 HOH WAT . D 4 HOH A 30 329 329 HOH WAT . D 4 HOH A 31 330 330 HOH WAT . D 4 HOH A 32 331 331 HOH WAT . D 4 HOH A 33 332 332 HOH WAT . D 4 HOH A 34 333 333 HOH WAT . D 4 HOH A 35 334 334 HOH WAT . D 4 HOH A 36 335 335 HOH WAT . D 4 HOH A 37 336 336 HOH WAT . D 4 HOH A 38 337 337 HOH WAT . D 4 HOH A 39 338 338 HOH WAT . D 4 HOH A 40 339 339 HOH WAT . D 4 HOH A 41 340 340 HOH WAT . D 4 HOH A 42 341 341 HOH WAT . D 4 HOH A 43 342 342 HOH WAT . D 4 HOH A 44 343 343 HOH WAT . D 4 HOH A 45 344 344 HOH WAT . D 4 HOH A 46 345 345 HOH WAT . D 4 HOH A 47 346 346 HOH WAT . D 4 HOH A 48 347 347 HOH WAT . D 4 HOH A 49 348 348 HOH WAT . D 4 HOH A 50 349 349 HOH WAT . D 4 HOH A 51 350 350 HOH WAT . D 4 HOH A 52 351 351 HOH WAT . D 4 HOH A 53 352 352 HOH WAT . D 4 HOH A 54 353 353 HOH WAT . D 4 HOH A 55 354 354 HOH WAT . D 4 HOH A 56 355 355 HOH WAT . D 4 HOH A 57 356 356 HOH WAT . D 4 HOH A 58 357 357 HOH WAT . D 4 HOH A 59 358 358 HOH WAT . D 4 HOH A 60 359 359 HOH WAT . D 4 HOH A 61 360 360 HOH WAT . D 4 HOH A 62 361 361 HOH WAT . D 4 HOH A 63 362 362 HOH WAT . D 4 HOH A 64 363 363 HOH WAT . D 4 HOH A 65 364 364 HOH WAT . D 4 HOH A 66 365 365 HOH WAT . D 4 HOH A 67 366 366 HOH WAT . D 4 HOH A 68 367 367 HOH WAT . D 4 HOH A 69 368 368 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 25.797 27.18 -6.064 1 49.97 ? C1 NAG 500 A 1 HETATM 2 C C2 NAG . . . B 2 27.051 27.839 -5.5 1 51.08 ? C2 NAG 500 A 1 HETATM 3 C C3 NAG . . . B 2 28.218 27.536 -6.431 1 51.96 ? C3 NAG 500 A 1 HETATM 4 C C4 NAG . . . B 2 28.388 26.02 -6.541 1 52.43 ? C4 NAG 500 A 1 HETATM 5 C C5 NAG . . . B 2 27.072 25.386 -7.018 1 53.1 ? C5 NAG 500 A 1 HETATM 6 C C6 NAG . . . B 2 27.124 23.867 -7.067 1 53.92 ? C6 NAG 500 A 1 HETATM 7 C C7 NAG . . . B 2 26.466 29.779 -4.201 1 51.97 ? C7 NAG 500 A 1 HETATM 8 C C8 NAG . . . B 2 26.274 31.286 -4.127 1 51.47 ? C8 NAG 500 A 1 HETATM 9 N N2 NAG . . . B 2 26.854 29.27 -5.368 1 52.16 ? N2 NAG 500 A 1 HETATM 10 O O3 NAG . . . B 2 29.404 28.124 -5.926 1 52.24 ? O3 NAG 500 A 1 HETATM 11 O O4 NAG . . . B 2 29.428 25.72 -7.457 1 52.75 ? O4 NAG 500 A 1 HETATM 12 O O5 NAG . . . B 2 25.985 25.757 -6.132 1 51.95 ? O5 NAG 500 A 1 HETATM 13 O O6 NAG . . . B 2 27.179 23.302 -5.764 1 56.1 ? O6 NAG 500 A 1 HETATM 14 O O7 NAG . . . B 2 26.263 29.084 -3.202 1 51.74 ? O7 NAG 500 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #