data_1EUO # _model_server_result.job_id rxegyb_opxcZ9pckqli69w _model_server_result.datetime_utc '2024-11-13 04:43:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1euo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":260}' # _entry.id 1EUO # _exptl.entry_id 1EUO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1EUO _cell.length_a 40.34 _cell.length_b 127.96 _cell.length_c 33.72 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EUO _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 2 1_555 A SG CYS 122 A CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 40 A CYS 39 1_555 A SG CYS 171 A CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc1 A NE2 HIS 58 A HIS 57 1_555 B FE HEM . A HEM 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc2 B FE HEM . A HEM 260 1_555 C N NH3 . A NH3 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 1EUO _atom_sites.fract_transf_matrix[1][1] 0.024789 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007815 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029656 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 260 260 HEM HEM . C 3 NH3 A 1 261 261 NH3 NH3 . D 4 HOH A 1 180 180 HOH HOH . D 4 HOH A 2 181 181 HOH HOH . D 4 HOH A 3 182 182 HOH HOH . D 4 HOH A 4 183 183 HOH HOH . D 4 HOH A 5 184 184 HOH HOH . D 4 HOH A 6 185 185 HOH HOH . D 4 HOH A 7 186 186 HOH HOH . D 4 HOH A 8 187 187 HOH HOH . D 4 HOH A 9 188 188 HOH HOH . D 4 HOH A 10 189 189 HOH HOH . D 4 HOH A 11 190 190 HOH HOH . D 4 HOH A 12 191 191 HOH HOH . D 4 HOH A 13 192 192 HOH HOH . D 4 HOH A 14 193 193 HOH HOH . D 4 HOH A 15 194 194 HOH HOH . D 4 HOH A 16 195 195 HOH HOH . D 4 HOH A 17 196 196 HOH HOH . D 4 HOH A 18 197 197 HOH HOH . D 4 HOH A 19 198 198 HOH HOH . D 4 HOH A 20 199 199 HOH HOH . D 4 HOH A 21 200 200 HOH HOH . D 4 HOH A 22 201 201 HOH HOH . D 4 HOH A 23 202 202 HOH HOH . D 4 HOH A 24 203 203 HOH HOH . D 4 HOH A 25 204 204 HOH HOH . D 4 HOH A 26 205 205 HOH HOH . D 4 HOH A 27 206 206 HOH HOH . D 4 HOH A 28 207 207 HOH HOH . D 4 HOH A 29 208 208 HOH HOH . D 4 HOH A 30 209 209 HOH HOH . D 4 HOH A 31 210 210 HOH HOH . D 4 HOH A 32 211 211 HOH HOH . D 4 HOH A 33 212 212 HOH HOH . D 4 HOH A 34 213 213 HOH HOH . D 4 HOH A 35 214 214 HOH HOH . D 4 HOH A 36 215 215 HOH HOH . D 4 HOH A 37 216 216 HOH HOH . D 4 HOH A 38 217 217 HOH HOH . D 4 HOH A 39 218 218 HOH HOH . D 4 HOH A 40 219 219 HOH HOH . D 4 HOH A 41 220 220 HOH HOH . D 4 HOH A 42 221 221 HOH HOH . D 4 HOH A 43 222 222 HOH HOH . D 4 HOH A 44 223 223 HOH HOH . D 4 HOH A 45 224 224 HOH HOH . D 4 HOH A 46 225 225 HOH HOH . D 4 HOH A 47 226 226 HOH HOH . D 4 HOH A 48 227 227 HOH HOH . D 4 HOH A 49 228 228 HOH HOH . D 4 HOH A 50 229 229 HOH HOH . D 4 HOH A 51 230 230 HOH HOH . D 4 HOH A 52 231 231 HOH HOH . D 4 HOH A 53 232 232 HOH HOH . D 4 HOH A 54 233 233 HOH HOH . D 4 HOH A 55 234 234 HOH HOH . D 4 HOH A 56 235 235 HOH HOH . D 4 HOH A 57 236 236 HOH HOH . D 4 HOH A 58 237 237 HOH HOH . D 4 HOH A 59 238 238 HOH HOH . D 4 HOH A 60 239 239 HOH HOH . D 4 HOH A 61 240 240 HOH HOH . D 4 HOH A 62 241 241 HOH HOH . D 4 HOH A 63 242 242 HOH HOH . D 4 HOH A 64 243 243 HOH HOH . D 4 HOH A 65 244 244 HOH HOH . D 4 HOH A 66 245 245 HOH HOH . D 4 HOH A 67 246 246 HOH HOH . D 4 HOH A 68 247 247 HOH HOH . D 4 HOH A 69 248 248 HOH HOH . D 4 HOH A 70 249 249 HOH HOH . D 4 HOH A 71 250 250 HOH HOH . D 4 HOH A 72 251 251 HOH HOH . D 4 HOH A 73 252 252 HOH HOH . D 4 HOH A 74 253 253 HOH HOH . D 4 HOH A 75 254 254 HOH HOH . D 4 HOH A 76 255 255 HOH HOH . D 4 HOH A 77 256 256 HOH HOH . D 4 HOH A 78 257 257 HOH HOH . D 4 HOH A 79 258 258 HOH HOH . D 4 HOH A 80 259 259 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 25.602 77.936 27.88 1 20.18 ? CHA HEM 260 A 1 HETATM 2 C CHB HEM . . . B 2 23.712 81.407 30.585 1 20.48 ? CHB HEM 260 A 1 HETATM 3 C CHC HEM . . . B 2 20.887 82.591 26.869 1 17.71 ? CHC HEM 260 A 1 HETATM 4 C CHD HEM . . . B 2 21.779 78.238 25.041 1 17.17 ? CHD HEM 260 A 1 HETATM 5 C C1A HEM . . . B 2 25.436 78.873 28.889 1 22.32 ? C1A HEM 260 A 1 HETATM 6 C C2A HEM . . . B 2 26.148 78.817 30.155 1 24.75 ? C2A HEM 260 A 1 HETATM 7 C C3A HEM . . . B 2 25.524 79.697 30.976 1 24.28 ? C3A HEM 260 A 1 HETATM 8 C C4A HEM . . . B 2 24.443 80.305 30.195 1 22.02 ? C4A HEM 260 A 1 HETATM 9 C CMA HEM . . . B 2 25.885 79.986 32.436 1 24.83 ? CMA HEM 260 A 1 HETATM 10 C CAA HEM . . . B 2 27.353 77.932 30.502 1 28.55 ? CAA HEM 260 A 1 HETATM 11 C CBA HEM . . . B 2 28.622 78.543 29.922 1 36.58 ? CBA HEM 260 A 1 HETATM 12 C CGA HEM . . . B 2 29.859 78.227 30.741 1 39.71 ? CGA HEM 260 A 1 HETATM 13 O O1A HEM . . . B 2 30.264 79.079 31.561 1 44.09 ? O1A HEM 260 A 1 HETATM 14 O O2A HEM . . . B 2 30.429 77.129 30.565 1 42.27 ? O2A HEM 260 A 1 HETATM 15 C C1B HEM . . . B 2 22.837 82.116 29.782 1 18.55 ? C1B HEM 260 A 1 HETATM 16 C C2B HEM . . . B 2 22.235 83.394 30.128 1 18.02 ? C2B HEM 260 A 1 HETATM 17 C C3B HEM . . . B 2 21.506 83.777 29.042 1 16.7 ? C3B HEM 260 A 1 HETATM 18 C C4B HEM . . . B 2 21.637 82.707 28.053 1 17.68 ? C4B HEM 260 A 1 HETATM 19 C CMB HEM . . . B 2 22.312 84.083 31.492 1 17.5 ? CMB HEM 260 A 1 HETATM 20 C CAB HEM . . . B 2 20.701 84.901 28.895 1 17.8 ? CAB HEM 260 A 1 HETATM 21 C CBB HEM . . . B 2 21.058 86.201 29.196 1 15.7 ? CBB HEM 260 A 1 HETATM 22 C C1C HEM . . . B 2 20.83 81.466 26.039 1 18.53 ? C1C HEM 260 A 1 HETATM 23 C C2C HEM . . . B 2 19.91 81.284 24.908 1 17.82 ? C2C HEM 260 A 1 HETATM 24 C C3C HEM . . . B 2 20.054 79.975 24.49 1 18.35 ? C3C HEM 260 A 1 HETATM 25 C C4C HEM . . . B 2 21.141 79.426 25.295 1 17.94 ? C4C HEM 260 A 1 HETATM 26 C CMC HEM . . . B 2 19.021 82.378 24.315 1 17.46 ? CMC HEM 260 A 1 HETATM 27 C CAC HEM . . . B 2 19.273 79.234 23.584 1 19.01 ? CAC HEM 260 A 1 HETATM 28 C CBC HEM . . . B 2 18.796 79.703 22.375 1 21.46 ? CBC HEM 260 A 1 HETATM 29 C C1D HEM . . . B 2 22.933 77.775 25.631 1 17.74 ? C1D HEM 260 A 1 HETATM 30 C C2D HEM . . . B 2 23.723 76.683 25.113 1 18.06 ? C2D HEM 260 A 1 HETATM 31 C C3D HEM . . . B 2 24.845 76.633 25.873 1 20.76 ? C3D HEM 260 A 1 HETATM 32 C C4D HEM . . . B 2 24.732 77.715 26.84 1 19.05 ? C4D HEM 260 A 1 HETATM 33 C CMD HEM . . . B 2 23.319 75.732 24.002 1 18.34 ? CMD HEM 260 A 1 HETATM 34 C CAD HEM . . . B 2 25.982 75.608 25.787 1 21.32 ? CAD HEM 260 A 1 HETATM 35 C CBD HEM . . . B 2 27.139 76.115 24.954 1 25.51 ? CBD HEM 260 A 1 HETATM 36 C CGD HEM . . . B 2 28.362 75.209 25.028 1 29.09 ? CGD HEM 260 A 1 HETATM 37 O O1D HEM . . . B 2 28.49 74.451 26.017 1 27.31 ? O1D HEM 260 A 1 HETATM 38 O O2D HEM . . . B 2 29.197 75.263 24.095 1 28.85 ? O2D HEM 260 A 1 HETATM 39 N NA HEM . . . B 2 24.385 79.764 28.935 1 20.42 ? NA HEM 260 A 1 HETATM 40 N NB HEM . . . B 2 22.476 81.712 28.509 1 18.3 ? NB HEM 260 A 1 HETATM 41 N NC HEM . . . B 2 21.59 80.33 26.241 1 18.35 ? NC HEM 260 A 1 HETATM 42 N ND HEM . . . B 2 23.579 78.423 26.657 1 18.41 ? ND HEM 260 A 1 HETATM 43 FE FE HEM . . . B 2 23.008 80.064 27.565 1 19.65 ? FE HEM 260 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #