data_1EW6 # _model_server_result.job_id VPDenRYAHlb6CliEK9KLKw _model_server_result.datetime_utc '2025-01-10 12:21:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ew6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":139}' # _entry.id 1EW6 # _exptl.entry_id 1EW6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1EW6 _cell.length_a 68.5 _cell.length_b 68.4 _cell.length_c 61 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EW6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 89 A HIS 89 1_555 D FE HEM . A HEM 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc2 B NE2 HIS 89 B HIS 89 1_555 F FE HEM . B HEM 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc3 F FE HEM . B HEM 139 1_555 H O HOH . B HOH 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 1EW6 _atom_sites.fract_transf_matrix[1][1] 0.014599 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01462 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016393 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 150 150 SO4 SO4 . D 3 HEM A 1 139 139 HEM HEM . E 2 SO4 B 1 151 150 SO4 SO4 . F 3 HEM B 1 139 139 HEM HEM . G 4 HOH A 1 151 1 HOH HOH . G 4 HOH A 2 152 2 HOH HOH . G 4 HOH A 3 153 3 HOH HOH . G 4 HOH A 4 154 4 HOH HOH . G 4 HOH A 5 155 5 HOH HOH . G 4 HOH A 6 156 7 HOH HOH . G 4 HOH A 7 157 15 HOH HOH . G 4 HOH A 8 158 16 HOH HOH . G 4 HOH A 9 159 17 HOH HOH . G 4 HOH A 10 160 18 HOH HOH . G 4 HOH A 11 161 19 HOH HOH . G 4 HOH A 12 162 20 HOH HOH . G 4 HOH A 13 163 22 HOH HOH . G 4 HOH A 14 164 23 HOH HOH . G 4 HOH A 15 165 27 HOH HOH . G 4 HOH A 16 166 37 HOH HOH . G 4 HOH A 17 167 38 HOH HOH . G 4 HOH A 18 168 41 HOH HOH . G 4 HOH A 19 169 42 HOH HOH . G 4 HOH A 20 170 45 HOH HOH . G 4 HOH A 21 171 48 HOH HOH . G 4 HOH A 22 172 50 HOH HOH . G 4 HOH A 23 173 61 HOH HOH . G 4 HOH A 24 174 62 HOH HOH . G 4 HOH A 25 175 63 HOH HOH . G 4 HOH A 26 176 64 HOH HOH . G 4 HOH A 27 177 65 HOH HOH . G 4 HOH A 28 178 66 HOH HOH . G 4 HOH A 29 179 67 HOH HOH . G 4 HOH A 30 180 70 HOH HOH . G 4 HOH A 31 181 72 HOH HOH . G 4 HOH A 32 182 81 HOH HOH . G 4 HOH A 33 183 82 HOH HOH . G 4 HOH A 34 184 83 HOH HOH . G 4 HOH A 35 185 85 HOH HOH . G 4 HOH A 36 186 86 HOH HOH . G 4 HOH A 37 187 87 HOH HOH . G 4 HOH A 38 188 88 HOH HOH . G 4 HOH A 39 189 89 HOH HOH . G 4 HOH A 40 190 91 HOH HOH . G 4 HOH A 41 191 92 HOH HOH . G 4 HOH A 42 192 93 HOH HOH . G 4 HOH A 43 193 94 HOH HOH . G 4 HOH A 44 194 95 HOH HOH . G 4 HOH A 45 195 96 HOH HOH . G 4 HOH A 46 196 97 HOH HOH . G 4 HOH A 47 197 122 HOH HOH . H 4 HOH B 1 152 10 HOH HOH . H 4 HOH B 2 153 11 HOH HOH . H 4 HOH B 3 154 12 HOH HOH . H 4 HOH B 4 155 13 HOH HOH . H 4 HOH B 5 156 14 HOH HOH . H 4 HOH B 6 157 21 HOH HOH . H 4 HOH B 7 158 24 HOH HOH . H 4 HOH B 8 159 25 HOH HOH . H 4 HOH B 9 160 26 HOH HOH . H 4 HOH B 10 161 28 HOH HOH . H 4 HOH B 11 162 29 HOH HOH . H 4 HOH B 12 163 30 HOH HOH . H 4 HOH B 13 164 31 HOH HOH . H 4 HOH B 14 165 32 HOH HOH . H 4 HOH B 15 166 33 HOH HOH . H 4 HOH B 16 167 34 HOH HOH . H 4 HOH B 17 168 35 HOH HOH . H 4 HOH B 18 169 36 HOH HOH . H 4 HOH B 19 170 43 HOH HOH . H 4 HOH B 20 171 44 HOH HOH . H 4 HOH B 21 172 46 HOH HOH . H 4 HOH B 22 173 47 HOH HOH . H 4 HOH B 23 174 49 HOH HOH . H 4 HOH B 24 175 51 HOH HOH . H 4 HOH B 25 176 52 HOH HOH . H 4 HOH B 26 177 53 HOH HOH . H 4 HOH B 27 178 54 HOH HOH . H 4 HOH B 28 179 55 HOH HOH . H 4 HOH B 29 180 68 HOH HOH . H 4 HOH B 30 181 69 HOH HOH . H 4 HOH B 31 182 71 HOH HOH . H 4 HOH B 32 183 73 HOH HOH . H 4 HOH B 33 184 76 HOH HOH . H 4 HOH B 34 185 77 HOH HOH . H 4 HOH B 35 186 78 HOH HOH . H 4 HOH B 36 187 84 HOH HOH . H 4 HOH B 37 188 98 HOH HOH . H 4 HOH B 38 189 99 HOH HOH . H 4 HOH B 39 190 100 HOH HOH . H 4 HOH B 40 191 101 HOH HOH . H 4 HOH B 41 192 102 HOH HOH . H 4 HOH B 42 193 103 HOH HOH . H 4 HOH B 43 194 104 HOH HOH . H 4 HOH B 44 195 105 HOH HOH . H 4 HOH B 45 196 106 HOH HOH . H 4 HOH B 46 197 107 HOH HOH . H 4 HOH B 47 198 108 HOH HOH . H 4 HOH B 48 199 109 HOH HOH . H 4 HOH B 49 200 110 HOH HOH . H 4 HOH B 50 201 111 HOH HOH . H 4 HOH B 51 202 112 HOH HOH . H 4 HOH B 52 203 113 HOH HOH . H 4 HOH B 53 204 114 HOH HOH . H 4 HOH B 54 205 115 HOH HOH . H 4 HOH B 55 206 116 HOH HOH . H 4 HOH B 56 207 117 HOH HOH . H 4 HOH B 57 208 118 HOH HOH . H 4 HOH B 58 209 119 HOH HOH . H 4 HOH B 59 210 120 HOH HOH . H 4 HOH B 60 211 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . D 3 28.512 12.738 6.897 1 25.63 ? CHA HEM 139 A 1 HETATM 2 C CHB HEM . . . D 3 27.086 17.173 5.599 1 24.85 ? CHB HEM 139 A 1 HETATM 3 C CHC HEM . . . D 3 29.124 18.988 9.59 1 23.04 ? CHC HEM 139 A 1 HETATM 4 C CHD HEM . . . D 3 30.492 14.567 10.879 1 25.29 ? CHD HEM 139 A 1 HETATM 5 C C1A HEM . . . D 3 27.932 13.769 6.176 1 25.94 ? C1A HEM 139 A 1 HETATM 6 C C2A HEM . . . D 3 27.241 13.654 4.886 1 26.92 ? C2A HEM 139 A 1 HETATM 7 C C3A HEM . . . D 3 26.842 14.891 4.536 1 26.2 ? C3A HEM 139 A 1 HETATM 8 C C4A HEM . . . D 3 27.271 15.813 5.574 1 25.24 ? C4A HEM 139 A 1 HETATM 9 C CMA HEM . . . D 3 26.08 15.311 3.265 1 24.51 ? CMA HEM 139 A 1 HETATM 10 C CAA HEM . . . D 3 27.045 12.328 4.109 1 29.86 ? CAA HEM 139 A 1 HETATM 11 C CBA HEM . . . D 3 28.293 11.992 3.263 1 34.27 ? CBA HEM 139 A 1 HETATM 12 C CGA HEM . . . D 3 28.081 10.992 2.127 1 36.25 ? CGA HEM 139 A 1 HETATM 13 O O1A HEM . . . D 3 28.918 10.019 2.065 1 37.75 ? O1A HEM 139 A 1 HETATM 14 O O2A HEM . . . D 3 27.14 11.175 1.361 1 38.44 ? O2A HEM 139 A 1 HETATM 15 C C1B HEM . . . D 3 27.507 18.053 6.561 1 24.29 ? C1B HEM 139 A 1 HETATM 16 C C2B HEM . . . D 3 27.299 19.495 6.506 1 23.72 ? C2B HEM 139 A 1 HETATM 17 C C3B HEM . . . D 3 27.878 20.019 7.627 1 23.45 ? C3B HEM 139 A 1 HETATM 18 C C4B HEM . . . D 3 28.435 18.911 8.379 1 23.98 ? C4B HEM 139 A 1 HETATM 19 C CMB HEM . . . D 3 26.571 20.238 5.373 1 21.4 ? CMB HEM 139 A 1 HETATM 20 C CAB HEM . . . D 3 27.973 21.494 8.081 1 23.07 ? CAB HEM 139 A 1 HETATM 21 C CBB HEM . . . D 3 26.624 22.184 8.363 1 27.48 ? CBB HEM 139 A 1 HETATM 22 C C1C HEM . . . D 3 29.672 17.931 10.292 1 24.17 ? C1C HEM 139 A 1 HETATM 23 C C2C HEM . . . D 3 30.413 18.069 11.567 1 24.64 ? C2C HEM 139 A 1 HETATM 24 C C3C HEM . . . D 3 30.788 16.831 11.929 1 24.91 ? C3C HEM 139 A 1 HETATM 25 C C4C HEM . . . D 3 30.303 15.922 10.906 1 25.53 ? C4C HEM 139 A 1 HETATM 26 C CMC HEM . . . D 3 30.675 19.423 12.287 1 24.22 ? CMC HEM 139 A 1 HETATM 27 C CAC HEM . . . D 3 31.585 16.362 13.166 1 26.93 ? CAC HEM 139 A 1 HETATM 28 C CBC HEM . . . D 3 32.934 17.065 13.389 1 27.24 ? CBC HEM 139 A 1 HETATM 29 C C1D HEM . . . D 3 30.083 13.677 9.932 1 25.82 ? C1D HEM 139 A 1 HETATM 30 C C2D HEM . . . D 3 30.345 12.255 9.953 1 26.89 ? C2D HEM 139 A 1 HETATM 31 C C3D HEM . . . D 3 29.804 11.723 8.833 1 28.2 ? C3D HEM 139 A 1 HETATM 32 C C4D HEM . . . D 3 29.182 12.833 8.111 1 26.22 ? C4D HEM 139 A 1 HETATM 33 C CMD HEM . . . D 3 31.128 11.534 11.069 1 26.12 ? CMD HEM 139 A 1 HETATM 34 C CAD HEM . . . D 3 29.853 10.242 8.406 1 32.76 ? CAD HEM 139 A 1 HETATM 35 C CBD HEM . . . D 3 31.351 9.889 8.112 1 38.41 ? CBD HEM 139 A 1 HETATM 36 C CGD HEM . . . D 3 31.696 9.643 6.658 1 43.03 ? CGD HEM 139 A 1 HETATM 37 O O1D HEM . . . D 3 30.902 9.95 5.747 1 45.94 ? O1D HEM 139 A 1 HETATM 38 O O2D HEM . . . D 3 32.83 9.161 6.49 1 45.02 ? O2D HEM 139 A 1 HETATM 39 N NA HEM . . . D 3 27.929 15.088 6.566 1 25.42 ? NA HEM 139 A 1 HETATM 40 N NB HEM . . . D 3 28.202 17.718 7.718 1 24.54 ? NB HEM 139 A 1 HETATM 41 N NC HEM . . . D 3 29.622 16.61 9.913 1 25.36 ? NC HEM 139 A 1 HETATM 42 N ND HEM . . . D 3 29.363 14.03 8.796 1 25.35 ? ND HEM 139 A 1 HETATM 43 FE FE HEM . . . D 3 28.621 15.826 8.345 1 25.19 ? FE HEM 139 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #