data_1EX9 # _model_server_result.job_id ScMN0AHP7WCtxBY3jbXMtQ _model_server_result.datetime_utc '2024-10-24 04:31:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ex9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":382}' # _entry.id 1EX9 # _exptl.entry_id 1EX9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 578.762 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OCTYL-PHOSPHINIC ACID 1,2-BIS-OCTYLCARBAMOYLOXY-ETHYL ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1EX9 _cell.length_a 45.47 _cell.length_b 50.963 _cell.length_c 110.034 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EX9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 183 A CYS 183 1_555 A SG CYS 235 A CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale 'COVALENT LINK WITH OCP' covale1 A OG SER 82 A SER 82 1_555 C P1 OCP . A OCP 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.556 ? metalc ? metalc1 A OD2 ASP 209 A ASP 209 1_555 B CA CA . A CA 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc2 A OD1 ASP 253 A ASP 253 1_555 B CA CA . A CA 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc3 A O GLN 257 A GLN 257 1_555 B CA CA . A CA 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc4 A O LEU 261 A LEU 261 1_555 B CA CA . A CA 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc5 B CA CA . A CA 286 1_555 D O HOH . A HOH 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc6 B CA CA . A CA 286 1_555 D O HOH . A HOH 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? # _chem_comp.formula 'C29 H59 N2 O7 P' _chem_comp.formula_weight 578.762 _chem_comp.id OCP _chem_comp.mon_nstd_flag . _chem_comp.name 'OCTYL-PHOSPHINIC ACID 1,2-BIS-OCTYLCARBAMOYLOXY-ETHYL ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1 OCP sing 237 n n P1 O2 OCP sing 238 n n P1 O4 OCP doub 239 n n P1 C4 OCP sing 240 n n O1 C1 OCP sing 241 n n O2 HO2 OCP sing 242 n n O5 C2 OCP sing 243 n n O5 C22 OCP sing 244 n n O6 C22 OCP doub 245 n n O3 C3 OCP sing 246 n n O3 C12 OCP sing 247 n n O7 C12 OCP doub 248 n n C1 C2 OCP sing 249 n n C1 H11 OCP sing 250 n n C1 H12 OCP sing 251 n n C2 C3 OCP sing 252 n n C2 H2 OCP sing 253 n n C3 H31 OCP sing 254 n n C3 H32 OCP sing 255 n n C4 C5 OCP sing 256 n n C4 H41 OCP sing 257 n n C4 H42 OCP sing 258 n n C5 C6 OCP sing 259 n n C5 H51 OCP sing 260 n n C5 H52 OCP sing 261 n n C6 C7 OCP sing 262 n n C6 H61 OCP sing 263 n n C6 H62 OCP sing 264 n n C7 C8 OCP sing 265 n n C7 H71 OCP sing 266 n n C7 H72 OCP sing 267 n n C8 C9 OCP sing 268 n n C8 H81 OCP sing 269 n n C8 H82 OCP sing 270 n n C9 C10 OCP sing 271 n n C9 H91 OCP sing 272 n n C9 H92 OCP sing 273 n n C10 C11 OCP sing 274 n n C10 H101 OCP sing 275 n n C10 H102 OCP sing 276 n n C11 H111 OCP sing 277 n n C11 H112 OCP sing 278 n n C11 H113 OCP sing 279 n n C12 N1 OCP sing 280 n n N1 C13 OCP sing 281 n n N1 HN1 OCP sing 282 n n C13 C14 OCP sing 283 n n C13 H131 OCP sing 284 n n C13 H132 OCP sing 285 n n C14 C15 OCP sing 286 n n C14 H141 OCP sing 287 n n C14 H142 OCP sing 288 n n C15 C16 OCP sing 289 n n C15 H151 OCP sing 290 n n C15 H152 OCP sing 291 n n C16 C17 OCP sing 292 n n C16 H161 OCP sing 293 n n C16 H162 OCP sing 294 n n C17 C18 OCP sing 295 n n C17 H171 OCP sing 296 n n C17 H172 OCP sing 297 n n C18 C19 OCP sing 298 n n C18 H181 OCP sing 299 n n C18 H182 OCP sing 300 n n C19 C20 OCP sing 301 n n C19 H191 OCP sing 302 n n C19 H192 OCP sing 303 n n C20 H201 OCP sing 304 n n C20 H202 OCP sing 305 n n C20 H203 OCP sing 306 n n C22 N2 OCP sing 307 n n N2 C23 OCP sing 308 n n N2 HN2 OCP sing 309 n n C23 C24 OCP sing 310 n n C23 H231 OCP sing 311 n n C23 H232 OCP sing 312 n n C24 C25 OCP sing 313 n n C24 H241 OCP sing 314 n n C24 H242 OCP sing 315 n n C25 C26 OCP sing 316 n n C25 H251 OCP sing 317 n n C25 H252 OCP sing 318 n n C26 C27 OCP sing 319 n n C26 H261 OCP sing 320 n n C26 H262 OCP sing 321 n n C27 C28 OCP sing 322 n n C27 H271 OCP sing 323 n n C27 H272 OCP sing 324 n n C28 C29 OCP sing 325 n n C28 H281 OCP sing 326 n n C28 H282 OCP sing 327 n n C29 C30 OCP sing 328 n n C29 H291 OCP sing 329 n n C29 H292 OCP sing 330 n n C30 H301 OCP sing 331 n n C30 H302 OCP sing 332 n n C30 H303 OCP sing 333 n n # _atom_sites.entry_id 1EX9 _atom_sites.fract_transf_matrix[1][1] 0.021993 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019622 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009088 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 286 286 CA CA . C 3 OCP A 1 382 382 OCP OCP . D 4 HOH A 1 401 401 HOH HOH . D 4 HOH A 2 402 402 HOH HOH . D 4 HOH A 3 403 403 HOH HOH . D 4 HOH A 4 404 404 HOH HOH . D 4 HOH A 5 405 405 HOH HOH . D 4 HOH A 6 406 406 HOH HOH . D 4 HOH A 7 407 407 HOH HOH . D 4 HOH A 8 408 408 HOH HOH . D 4 HOH A 9 409 409 HOH HOH . D 4 HOH A 10 410 410 HOH HOH . D 4 HOH A 11 411 411 HOH HOH . D 4 HOH A 12 412 412 HOH HOH . D 4 HOH A 13 413 413 HOH HOH . D 4 HOH A 14 414 414 HOH HOH . D 4 HOH A 15 415 415 HOH HOH . D 4 HOH A 16 416 416 HOH HOH . D 4 HOH A 17 417 417 HOH HOH . D 4 HOH A 18 418 418 HOH HOH . D 4 HOH A 19 419 419 HOH HOH . D 4 HOH A 20 420 420 HOH HOH . D 4 HOH A 21 421 421 HOH HOH . D 4 HOH A 22 422 422 HOH HOH . D 4 HOH A 23 423 423 HOH HOH . D 4 HOH A 24 424 424 HOH HOH . D 4 HOH A 25 425 425 HOH HOH . D 4 HOH A 26 426 426 HOH HOH . D 4 HOH A 27 427 427 HOH HOH . D 4 HOH A 28 428 428 HOH HOH . D 4 HOH A 29 429 429 HOH HOH . D 4 HOH A 30 430 430 HOH HOH . D 4 HOH A 31 431 431 HOH HOH . D 4 HOH A 32 432 432 HOH HOH . D 4 HOH A 33 433 433 HOH HOH . D 4 HOH A 34 434 434 HOH HOH . D 4 HOH A 35 435 435 HOH HOH . D 4 HOH A 36 436 436 HOH HOH . D 4 HOH A 37 437 437 HOH HOH . D 4 HOH A 38 438 438 HOH HOH . D 4 HOH A 39 439 439 HOH HOH . D 4 HOH A 40 440 440 HOH HOH . D 4 HOH A 41 441 441 HOH HOH . D 4 HOH A 42 442 442 HOH HOH . D 4 HOH A 43 443 443 HOH HOH . D 4 HOH A 44 444 444 HOH HOH . D 4 HOH A 45 445 445 HOH HOH . D 4 HOH A 46 446 446 HOH HOH . D 4 HOH A 47 447 447 HOH HOH . D 4 HOH A 48 448 448 HOH HOH . D 4 HOH A 49 449 449 HOH HOH . D 4 HOH A 50 450 450 HOH HOH . D 4 HOH A 51 451 451 HOH HOH . D 4 HOH A 52 452 452 HOH HOH . D 4 HOH A 53 453 453 HOH HOH . D 4 HOH A 54 454 454 HOH HOH . D 4 HOH A 55 455 455 HOH HOH . D 4 HOH A 56 456 456 HOH HOH . D 4 HOH A 57 457 457 HOH HOH . D 4 HOH A 58 458 458 HOH HOH . D 4 HOH A 59 459 459 HOH HOH . D 4 HOH A 60 460 460 HOH HOH . D 4 HOH A 61 461 461 HOH HOH . D 4 HOH A 62 462 462 HOH HOH . D 4 HOH A 63 463 463 HOH HOH . D 4 HOH A 64 464 464 HOH HOH . D 4 HOH A 65 465 465 HOH HOH . D 4 HOH A 66 466 466 HOH HOH . D 4 HOH A 67 467 467 HOH HOH . D 4 HOH A 68 468 468 HOH HOH . D 4 HOH A 69 469 469 HOH HOH . D 4 HOH A 70 470 470 HOH HOH . D 4 HOH A 71 471 471 HOH HOH . D 4 HOH A 72 472 472 HOH HOH . D 4 HOH A 73 473 473 HOH HOH . D 4 HOH A 74 474 474 HOH HOH . D 4 HOH A 75 475 475 HOH HOH . D 4 HOH A 76 476 476 HOH HOH . D 4 HOH A 77 477 477 HOH HOH . D 4 HOH A 78 478 478 HOH HOH . D 4 HOH A 79 479 479 HOH HOH . D 4 HOH A 80 480 480 HOH HOH . D 4 HOH A 81 481 481 HOH HOH . D 4 HOH A 82 482 482 HOH HOH . D 4 HOH A 83 483 483 HOH HOH . D 4 HOH A 84 484 484 HOH HOH . D 4 HOH A 85 485 485 HOH HOH . D 4 HOH A 86 486 486 HOH HOH . D 4 HOH A 87 487 487 HOH HOH . D 4 HOH A 88 488 488 HOH HOH . D 4 HOH A 89 489 489 HOH HOH . D 4 HOH A 90 490 490 HOH HOH . D 4 HOH A 91 491 491 HOH HOH . D 4 HOH A 92 492 492 HOH HOH . D 4 HOH A 93 493 493 HOH HOH . D 4 HOH A 94 494 494 HOH HOH . D 4 HOH A 95 495 495 HOH HOH . D 4 HOH A 96 496 496 HOH HOH . D 4 HOH A 97 497 497 HOH HOH . D 4 HOH A 98 498 498 HOH HOH . D 4 HOH A 99 499 499 HOH HOH . D 4 HOH A 100 500 500 HOH HOH . D 4 HOH A 101 501 501 HOH HOH . D 4 HOH A 102 502 502 HOH HOH . D 4 HOH A 103 503 503 HOH HOH . D 4 HOH A 104 504 504 HOH HOH . D 4 HOH A 105 505 505 HOH HOH . D 4 HOH A 106 506 506 HOH HOH . D 4 HOH A 107 507 507 HOH HOH . D 4 HOH A 108 508 508 HOH HOH . D 4 HOH A 109 509 509 HOH HOH . D 4 HOH A 110 510 510 HOH HOH . D 4 HOH A 111 511 511 HOH HOH . D 4 HOH A 112 512 512 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 OCP . . . C 3 0.597 -1.087 45.076 1 32.63 ? P1 OCP 382 A 1 HETATM 2 O O1 OCP . . . C 3 1.151 -2.025 46.228 1 38.07 ? O1 OCP 382 A 1 HETATM 3 O O4 OCP . . . C 3 0.97 0.319 45.117 1 32.14 ? O4 OCP 382 A 1 HETATM 4 O O5 OCP . . . C 3 3.67 -2.61 49.039 1 58.34 ? O5 OCP 382 A 1 HETATM 5 O O6 OCP . . . C 3 3.06 -1.202 50.977 1 60.63 ? O6 OCP 382 A 1 HETATM 6 O O3 OCP . . . C 3 0.451 -2.753 50.195 1 61.76 ? O3 OCP 382 A 1 HETATM 7 O O7 OCP . . . C 3 -1.978 -3.409 49.936 1 62.73 ? O7 OCP 382 A 1 HETATM 8 C C1 OCP . . . C 3 2.357 -1.769 47.081 1 48.34 ? C1 OCP 382 A 1 HETATM 9 C C2 OCP . . . C 3 2.254 -2.064 48.585 1 52.78 ? C2 OCP 382 A 1 HETATM 10 C C3 OCP . . . C 3 1.169 -3.169 48.995 1 54.7 ? C3 OCP 382 A 1 HETATM 11 C C4 OCP . . . C 3 -1.032 -0.863 44.627 1 31.75 ? C4 OCP 382 A 1 HETATM 12 C C5 OCP . . . C 3 -1.431 -2.375 44.492 1 30.6 ? C5 OCP 382 A 1 HETATM 13 C C6 OCP . . . C 3 -3.067 -2.466 44.387 1 29.25 ? C6 OCP 382 A 1 HETATM 14 C C7 OCP . . . C 3 -3.774 -1.957 45.656 1 28.56 ? C7 OCP 382 A 1 HETATM 15 C C8 OCP . . . C 3 -4.785 -2.601 46.556 1 27.83 ? C8 OCP 382 A 1 HETATM 16 C C9 OCP . . . C 3 -5.693 -1.531 47.317 1 29.04 ? C9 OCP 382 A 1 HETATM 17 C C10 OCP . . . C 3 -5.725 -2.313 48.685 1 30.56 ? C10 OCP 382 A 1 HETATM 18 C C11 OCP . . . C 3 -5.819 -1.333 50.084 1 30.81 ? C11 OCP 382 A 1 HETATM 19 C C12 OCP . . . C 3 -0.759 -3.358 50.465 1 59.36 ? C12 OCP 382 A 1 HETATM 20 N N1 OCP . . . C 3 -0.548 -4.2 51.819 1 61.26 ? N1 OCP 382 A 1 HETATM 21 C C13 OCP . . . C 3 -1.452 -3.657 53.119 1 62.17 ? C13 OCP 382 A 1 HETATM 22 C C14 OCP . . . C 3 -1.111 -4.761 54.177 1 63.33 ? C14 OCP 382 A 1 HETATM 23 C C15 OCP . . . C 3 -1.744 -4.106 55.315 1 64.21 ? C15 OCP 382 A 1 HETATM 24 C C16 OCP . . . C 3 -2.593 -4.176 56.412 1 65.51 ? C16 OCP 382 A 1 HETATM 25 C C17 OCP . . . C 3 -2.734 -4.901 57.734 1 66.54 ? C17 OCP 382 A 1 HETATM 26 C C18 OCP . . . C 3 -1.738 -4.447 58.803 1 66.66 ? C18 OCP 382 A 1 HETATM 27 C C19 OCP . . . C 3 -2.838 -3.742 59.597 1 67.11 ? C19 OCP 382 A 1 HETATM 28 C C20 OCP . . . C 3 -2.312 -3.038 60.894 1 66.83 ? C20 OCP 382 A 1 HETATM 29 C C22 OCP . . . C 3 3.839 -2.013 50.368 1 55.76 ? C22 OCP 382 A 1 HETATM 30 N N2 OCP . . . C 3 4.959 -2.221 51.234 1 57.54 ? N2 OCP 382 A 1 HETATM 31 C C23 OCP . . . C 3 5.776 -3.442 52.256 1 57.69 ? C23 OCP 382 A 1 HETATM 32 C C24 OCP . . . C 3 6.157 -3.463 53.672 1 58.45 ? C24 OCP 382 A 1 HETATM 33 C C25 OCP . . . C 3 7.435 -4.01 53.438 1 59.32 ? C25 OCP 382 A 1 HETATM 34 C C26 OCP . . . C 3 8.203 -4.091 54.809 1 60.49 ? C26 OCP 382 A 1 HETATM 35 C C27 OCP . . . C 3 8.23 -5.63 55.028 1 62.32 ? C27 OCP 382 A 1 HETATM 36 C C28 OCP . . . C 3 8.814 -6.04 56.365 1 63.44 ? C28 OCP 382 A 1 HETATM 37 C C29 OCP . . . C 3 7.528 -6.197 57.26 1 64.28 ? C29 OCP 382 A 1 HETATM 38 C C30 OCP . . . C 3 8.131 -6.66 58.781 1 63.92 ? C30 OCP 382 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 38 #