data_1EXI # _model_server_result.job_id oeLWgDV61SFaew6gAboDvA _model_server_result.datetime_utc '2024-11-26 06:23:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1exi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 1EXI # _exptl.entry_id 1EXI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 430.176 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAPHENYLANTIMONIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1EXI _cell.length_a 110.15 _cell.length_b 110.15 _cell.length_c 144.59 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EXI _symmetry.cell_setting tetragonal _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_576 x,-y+2,-z+3/2 1 0 0 0 -1 0 0 0 -1 0 220.3 216.885 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B NE2 HIS 189 A HIS 189 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? hydrog 'DA-DT PAIR' hydrog1 A N1 DA 1 M DA -11 1_555 A N3 DT 21 M DT 11 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N3 DC 2 M DC -10 1_555 A N1 DG 20 M DG 10 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N4 DC 2 M DC -10 1_555 A O6 DG 20 M DG 10 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A O2 DC 2 M DC -10 1_555 A N2 DG 20 M DG 10 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog5 A O2 DC 3 M DC -9 1_555 A N2 DG 20 M DG 10 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 DC 4 M DC -8 1_555 A N1 DG 18 M DG 8 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N4 DC 4 M DC -8 1_555 A O6 DG 18 M DG 8 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O2 DC 4 M DC -8 1_555 A N2 DG 18 M DG 8 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog9 A O2 DC 4 M DC -8 1_555 A N2 DG 19 M DG 9 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N3 DT 5 M DT -7 1_555 A N1 DA 17 M DA 7 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O4 DT 5 M DT -7 1_555 A N6 DA 17 M DA 7 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DG MISPAIR' hydrog12 A O2 DT 5 M DT -7 1_555 A N2 DG 18 M DG 8 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 DC 6 M DC -6 1_555 A N1 DG 16 M DG 6 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N4 DC 6 M DC -6 1_555 A O6 DG 16 M DG 6 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O2 DC 6 M DC -6 1_555 A N2 DG 16 M DG 6 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 DC 7 M DC -5 1_555 A N1 DG 15 M DG 5 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N4 DC 7 M DC -5 1_555 A O6 DG 15 M DG 5 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O2 DC 7 M DC -5 1_555 A N2 DG 15 M DG 5 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N3 DC 7 M DC -5 1_555 A N1 DG 16 M DG 6 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N4 DC 7 M DC -5 1_555 A O6 DG 16 M DG 6 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O2 DC 7 M DC -5 1_555 A N2 DG 16 M DG 6 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N3 DC 8 M DC -4 1_555 A N1 DG 14 M DG 4 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N4 DC 8 M DC -4 1_555 A O6 DG 14 M DG 4 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O2 DC 8 M DC -4 1_555 A N2 DG 14 M DG 4 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N3 DC 9 M DC -3 1_555 A N1 DG 13 M DG 3 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N4 DC 9 M DC -3 1_555 A O6 DG 13 M DG 3 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A O2 DC 9 M DC -3 1_555 A N2 DG 13 M DG 3 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DA PAIR' hydrog28 A N3 DT 10 M DT -2 1_555 A N1 DA 12 M DA 2 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DT PAIR' hydrog29 A N1 DA 12 M DA 2 1_555 A N3 DT 10 M DT -2 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N1 DG 13 M DG 3 1_555 A N3 DC 9 M DC -3 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N2 DG 13 M DG 3 1_555 A O2 DC 9 M DC -3 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A O6 DG 13 M DG 3 1_555 A N4 DC 9 M DC -3 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 A N1 DG 14 M DG 4 1_555 A N3 DC 8 M DC -4 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 A N2 DG 14 M DG 4 1_555 A O2 DC 8 M DC -4 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 A O6 DG 14 M DG 4 1_555 A N4 DC 8 M DC -4 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 A N1 DG 15 M DG 5 1_555 A N3 DC 7 M DC -5 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 A N2 DG 15 M DG 5 1_555 A O2 DC 7 M DC -5 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 A O6 DG 15 M DG 5 1_555 A N4 DC 7 M DC -5 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 A N1 DG 16 M DG 6 1_555 A N3 DC 6 M DC -6 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 A N2 DG 16 M DG 6 1_555 A O2 DC 6 M DC -6 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 A O6 DG 16 M DG 6 1_555 A N4 DC 6 M DC -6 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 A N1 DG 16 M DG 6 1_555 A N3 DC 7 M DC -5 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog43 A N2 DG 16 M DG 6 1_555 A O2 DC 7 M DC -5 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog44 A O6 DG 16 M DG 6 1_555 A N4 DC 7 M DC -5 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog45 A N1 DA 17 M DA 7 1_555 A N3 DT 5 M DT -7 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog46 A N6 DA 17 M DA 7 1_555 A O4 DT 5 M DT -7 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog47 A N1 DG 18 M DG 8 1_555 A N3 DC 4 M DC -8 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog48 A N2 DG 18 M DG 8 1_555 A O2 DC 4 M DC -8 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog49 A O6 DG 18 M DG 8 1_555 A N4 DC 4 M DC -8 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DT MISPAIR' hydrog50 A N1 DG 18 M DG 8 1_555 A O4 DT 5 M DT -7 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog51 A N1 DG 19 M DG 9 1_555 A N3 DC 4 M DC -8 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog52 A N1 DG 20 M DG 10 1_555 A N3 DC 2 M DC -10 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog53 A N2 DG 20 M DG 10 1_555 A O2 DC 2 M DC -10 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog54 A O6 DG 20 M DG 10 1_555 A N4 DC 2 M DC -10 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog55 A N1 DG 20 M DG 10 1_555 A N3 DC 3 M DC -9 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DA PAIR' hydrog56 A N3 DT 21 M DT 11 1_555 A N1 DA 1 M DA -11 6_576 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C24 H20 Sb 1' _chem_comp.formula_weight 430.176 _chem_comp.id 118 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAPHENYLANTIMONIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag SB C1A 118 sing 1 n n SB C1C 118 sing 2 n n SB C1D 118 sing 3 n n SB C1B 118 sing 4 n n C1A C2A 118 sing 5 n y C1A C6A 118 doub 6 n y C2A C3A 118 doub 7 n y C2A H2A 118 sing 8 n n C3A C4A 118 sing 9 n y C3A H3A 118 sing 10 n n C4A C5A 118 doub 11 n y C4A H4A 118 sing 12 n n C5A C6A 118 sing 13 n y C5A H5A 118 sing 14 n n C6A H6A 118 sing 15 n n C1C C6C 118 sing 16 n y C1C C2C 118 doub 17 n y C6C C5C 118 doub 18 n y C6C H6C 118 sing 19 n n C5C C4C 118 sing 20 n y C5C H5C 118 sing 21 n n C4C C3C 118 doub 22 n y C4C H4C 118 sing 23 n n C3C C2C 118 sing 24 n y C3C H3C 118 sing 25 n n C2C H2C 118 sing 26 n n C1D C6D 118 sing 27 n y C1D C2D 118 doub 28 n y C6D C5D 118 doub 29 n y C6D H6D 118 sing 30 n n C5D C4D 118 sing 31 n y C5D H5D 118 sing 32 n n C4D C3D 118 doub 33 n y C4D H4D 118 sing 34 n n C3D C2D 118 sing 35 n y C3D H3D 118 sing 36 n n C2D H2D 118 sing 37 n n C6B C5B 118 doub 38 n y C6B C1B 118 sing 39 n y C6B H6B 118 sing 40 n n C5B C4B 118 sing 41 n y C5B H5B 118 sing 42 n n C4B C3B 118 doub 43 n y C4B H4B 118 sing 44 n n C3B C2B 118 sing 45 n y C3B H3B 118 sing 46 n n C2B C1B 118 doub 47 n y C2B H2B 118 sing 48 n n # _atom_sites.entry_id 1EXI _atom_sites.fract_transf_matrix[1][1] 0.009079 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009079 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006916 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 501 501 ZN ZN . D 4 118 A 1 502 1 118 118 . E 4 118 A 1 503 2 118 118 . F 5 HOH M 1 101 101 HOH HOH . G 5 HOH A 1 504 102 HOH HOH . G 5 HOH A 2 505 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 SB SB 118 . . . D 4 51.302 85.652 138.612 0.5 27.72 ? SB 118 502 A 1 HETATM 2 C C1A 118 . . . D 4 52.027 84.136 139.046 0.5 20 ? C1A 118 502 A 1 HETATM 3 C C2A 118 . . . D 4 52.055 83.05 138.148 0.5 20 ? C2A 118 502 A 1 HETATM 4 C C3A 118 . . . D 4 52.622 81.868 138.499 0.5 20 ? C3A 118 502 A 1 HETATM 5 C C4A 118 . . . D 4 53.176 81.739 139.764 0.5 21.73 ? C4A 118 502 A 1 HETATM 6 C C5A 118 . . . D 4 53.147 82.845 140.685 0.5 20 ? C5A 118 502 A 1 HETATM 7 C C6A 118 . . . D 4 52.577 84.017 140.313 0.5 20 ? C6A 118 502 A 1 HETATM 8 C C1C 118 . . . D 4 52.218 87.128 139.321 0.5 25.2 ? C1C 118 502 A 1 HETATM 9 C C6C 118 . . . D 4 51.508 88.068 140.084 0.5 20 ? C6C 118 502 A 1 HETATM 10 C C5C 118 . . . D 4 52.155 89.18 140.635 0.5 20 ? C5C 118 502 A 1 HETATM 11 C C4C 118 . . . D 4 53.523 89.37 140.411 0.5 25.86 ? C4C 118 502 A 1 HETATM 12 C C3C 118 . . . D 4 54.246 88.438 139.639 0.5 20 ? C3C 118 502 A 1 HETATM 13 C C2C 118 . . . D 4 53.591 87.325 139.099 0.5 20 ? C2C 118 502 A 1 HETATM 14 C C1D 118 . . . D 4 49.548 85.498 139.025 0.5 25.69 ? C1D 118 502 A 1 HETATM 15 C C6D 118 . . . D 4 49.095 84.215 139.375 0.5 20 ? C6D 118 502 A 1 HETATM 16 C C5D 118 . . . D 4 47.773 83.991 139.693 0.5 20 ? C5D 118 502 A 1 HETATM 17 C C4D 118 . . . D 4 46.889 85.027 139.652 0.5 20 ? C4D 118 502 A 1 HETATM 18 C C3D 118 . . . D 4 47.326 86.324 139.284 0.5 20.91 ? C3D 118 502 A 1 HETATM 19 C C2D 118 . . . D 4 48.645 86.551 138.966 0.5 24.79 ? C2D 118 502 A 1 HETATM 20 C C6B 118 . . . D 4 50.367 86.718 136.042 0.5 20 ? C6B 118 502 A 1 HETATM 21 C C5B 118 . . . D 4 50.34 86.925 134.645 0.5 21.29 ? C5B 118 502 A 1 HETATM 22 C C4B 118 . . . D 4 51.294 86.307 133.837 0.5 21.83 ? C4B 118 502 A 1 HETATM 23 C C3B 118 . . . D 4 52.293 85.466 134.427 0.5 20 ? C3B 118 502 A 1 HETATM 24 C C2B 118 . . . D 4 52.312 85.258 135.81 0.5 27.56 ? C2B 118 502 A 1 HETATM 25 C C1B 118 . . . D 4 51.355 85.886 136.641 0.5 26.69 ? C1B 118 502 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #