data_1EXZ # _model_server_result.job_id tEiboTjxVVk_YGOel0UGxg _model_server_result.datetime_utc '2024-11-23 01:16:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1exz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":807}' # _entry.id 1EXZ # _exptl.entry_id 1EXZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.76 _cell.angle_gamma 90 _cell.entry_id 1EXZ _cell.length_a 36.154 _cell.length_b 87.526 _cell.length_c 79.434 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EXZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,L,M 1 1 C,D,H,I,J,K,N,O 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 89 A CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 43 A CYS 43 1_555 A SG CYS 138 A CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 B SG CYS 4 B CYS 204 1_555 B SG CYS 89 B CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 B SG CYS 43 B CYS 243 1_555 B SG CYS 138 B CYS 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 C SG CYS 43 C CYS 443 1_555 C SG CYS 138 C CYS 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A OD1 ASP 54 A ASP 54 1_555 E CA CA . A CA 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc2 A OD2 ASP 54 A ASP 54 1_555 E CA CA . A CA 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc3 A OD1 ASP 58 A ASP 58 1_555 E CA CA . A CA 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.287 ? metalc ? metalc4 A OD2 ASP 124 A ASP 124 1_555 I SM SM . C SM 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc5 A OD1 ASP 124 A ASP 124 1_555 I SM SM . C SM 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc6 A OD2 ASP 128 A ASP 128 1_555 I SM SM . C SM 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc7 E CA CA . A CA 806 1_555 L O HOH . A HOH 861 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.387 ? metalc ? metalc8 B NH1 ARG 7 B ARG 207 1_555 F SM SM . B SM 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.1 ? metalc ? metalc9 B O SER 67 B SER 267 1_555 J CA CA . C CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc10 B OD1 ASP 85 B ASP 285 1_555 F SM SM . B SM 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.055 ? metalc ? metalc11 B OE2 GLU 88 B GLU 288 1_555 F SM SM . B SM 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? metalc ? metalc12 B OD2 ASP 137 B ASP 337 1_555 G SM SM . B SM 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc13 B OD1 ASP 137 B ASP 337 1_555 G SM SM . B SM 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.148 ? metalc ? metalc14 B O VAL 139 B VAL 339 1_555 G SM SM . B SM 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc15 F SM SM . B SM 802 1_555 D OD1 ASP 77 D ASP 677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc16 F SM SM . B SM 802 1_555 D OD2 ASP 77 D ASP 677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? metalc ? metalc17 G SM SM . B SM 803 1_555 M O HOH . B HOH 859 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc18 M O HOH . B HOH 937 1_555 J CA CA . C CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc19 M O HOH . B HOH 943 1_555 J CA CA . C CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? metalc ? metalc20 C OD2 ASP 54 C ASP 454 1_555 H SM SM . C SM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc21 C OD1 ASP 54 C ASP 454 1_555 H SM SM . C SM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc22 C OD2 ASP 58 C ASP 458 1_555 H SM SM . C SM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc23 C OD1 ASP 58 C ASP 458 1_555 H SM SM . C SM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? metalc ? metalc24 C OE1 GLU 113 C GLU 513 1_555 J CA CA . C CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc25 C OE2 GLU 113 C GLU 513 1_555 J CA CA . C CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc26 C O VAL 131 C VAL 531 1_555 I SM SM . C SM 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc27 C OG SER 133 C SER 533 1_555 I SM SM . C SM 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc28 H SM SM . C SM 801 1_555 N O HOH . C HOH 946 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 334 n n C C2 TRS sing 335 n n C C3 TRS sing 336 n n C N TRS sing 337 n n C1 O1 TRS sing 338 n n C1 H11 TRS sing 339 n n C1 H12 TRS sing 340 n n C2 O2 TRS sing 341 n n C2 H21 TRS sing 342 n n C2 H22 TRS sing 343 n n C3 O3 TRS sing 344 n n C3 H31 TRS sing 345 n n C3 H32 TRS sing 346 n n N HN1 TRS sing 347 n n N HN2 TRS sing 348 n n N HN3 TRS sing 349 n n O1 HO1 TRS sing 350 n n O2 HO2 TRS sing 351 n n O3 HO3 TRS sing 352 n n # _atom_sites.entry_id 1EXZ _atom_sites.fract_transf_matrix[1][1] 0.027659 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003769 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011425 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012705 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CA A 1 806 806 CA CA2 . F 3 SM B 1 802 802 SM SM . G 3 SM B 1 803 803 SM SM . H 3 SM C 1 801 801 SM SM . I 3 SM C 1 804 804 SM SM . J 2 CA C 1 805 805 CA CA2 . K 4 TRS D 1 807 807 TRS TRS . L 5 HOH A 1 814 814 HOH TIP . L 5 HOH A 2 817 817 HOH TIP . L 5 HOH A 3 823 823 HOH TIP . L 5 HOH A 4 824 824 HOH TIP . L 5 HOH A 5 832 832 HOH TIP . L 5 HOH A 6 837 837 HOH TIP . L 5 HOH A 7 844 844 HOH TIP . L 5 HOH A 8 854 854 HOH TIP . L 5 HOH A 9 856 856 HOH TIP . L 5 HOH A 10 861 861 HOH TIP . L 5 HOH A 11 862 862 HOH TIP . L 5 HOH A 12 864 864 HOH TIP . L 5 HOH A 13 866 866 HOH TIP . L 5 HOH A 14 867 867 HOH TIP . L 5 HOH A 15 876 876 HOH TIP . L 5 HOH A 16 879 879 HOH TIP . L 5 HOH A 17 884 884 HOH TIP . L 5 HOH A 18 894 894 HOH TIP . L 5 HOH A 19 896 896 HOH TIP . L 5 HOH A 20 899 899 HOH TIP . L 5 HOH A 21 902 902 HOH TIP . L 5 HOH A 22 906 906 HOH TIP . L 5 HOH A 23 907 907 HOH TIP . L 5 HOH A 24 911 911 HOH TIP . L 5 HOH A 25 915 915 HOH TIP . L 5 HOH A 26 920 920 HOH TIP . L 5 HOH A 27 921 921 HOH TIP . L 5 HOH A 28 922 922 HOH TIP . L 5 HOH A 29 924 924 HOH TIP . L 5 HOH A 30 929 929 HOH TIP . L 5 HOH A 31 932 932 HOH TIP . L 5 HOH A 32 935 935 HOH TIP . L 5 HOH A 33 941 941 HOH TIP . L 5 HOH A 34 942 942 HOH TIP . L 5 HOH A 35 947 947 HOH TIP . M 5 HOH B 1 818 818 HOH TIP . M 5 HOH B 2 820 820 HOH TIP . M 5 HOH B 3 827 827 HOH TIP . M 5 HOH B 4 828 828 HOH TIP . M 5 HOH B 5 829 829 HOH TIP . M 5 HOH B 6 834 834 HOH TIP . M 5 HOH B 7 836 836 HOH TIP . M 5 HOH B 8 841 841 HOH TIP . M 5 HOH B 9 845 845 HOH TIP . M 5 HOH B 10 846 846 HOH TIP . M 5 HOH B 11 849 849 HOH TIP . M 5 HOH B 12 850 850 HOH TIP . M 5 HOH B 13 852 852 HOH TIP . M 5 HOH B 14 859 859 HOH TIP . M 5 HOH B 15 869 869 HOH TIP . M 5 HOH B 16 870 870 HOH TIP . M 5 HOH B 17 872 872 HOH TIP . M 5 HOH B 18 880 880 HOH TIP . M 5 HOH B 19 881 881 HOH TIP . M 5 HOH B 20 886 886 HOH TIP . M 5 HOH B 21 889 889 HOH TIP . M 5 HOH B 22 892 892 HOH TIP . M 5 HOH B 23 893 893 HOH TIP . M 5 HOH B 24 901 901 HOH TIP . M 5 HOH B 25 904 904 HOH TIP . M 5 HOH B 26 919 919 HOH TIP . M 5 HOH B 27 926 926 HOH TIP . M 5 HOH B 28 933 933 HOH TIP . M 5 HOH B 29 937 937 HOH TIP . M 5 HOH B 30 939 939 HOH TIP . M 5 HOH B 31 943 943 HOH TIP . M 5 HOH B 32 945 945 HOH TIP . N 5 HOH C 1 811 811 HOH TIP . N 5 HOH C 2 812 812 HOH TIP . N 5 HOH C 3 813 813 HOH TIP . N 5 HOH C 4 815 815 HOH TIP . N 5 HOH C 5 816 816 HOH TIP . N 5 HOH C 6 822 822 HOH TIP . N 5 HOH C 7 826 826 HOH TIP . N 5 HOH C 8 830 830 HOH TIP . N 5 HOH C 9 833 833 HOH TIP . N 5 HOH C 10 843 843 HOH TIP . N 5 HOH C 11 847 847 HOH TIP . N 5 HOH C 12 851 851 HOH TIP . N 5 HOH C 13 868 868 HOH TIP . N 5 HOH C 14 874 874 HOH TIP . N 5 HOH C 15 875 875 HOH TIP . N 5 HOH C 16 877 877 HOH TIP . N 5 HOH C 17 885 885 HOH TIP . N 5 HOH C 18 888 888 HOH TIP . N 5 HOH C 19 895 895 HOH TIP . N 5 HOH C 20 897 897 HOH TIP . N 5 HOH C 21 900 900 HOH TIP . N 5 HOH C 22 903 903 HOH TIP . N 5 HOH C 23 908 908 HOH TIP . N 5 HOH C 24 909 909 HOH TIP . N 5 HOH C 25 913 913 HOH TIP . N 5 HOH C 26 914 914 HOH TIP . N 5 HOH C 27 916 916 HOH TIP . N 5 HOH C 28 925 925 HOH TIP . N 5 HOH C 29 927 927 HOH TIP . N 5 HOH C 30 928 928 HOH TIP . N 5 HOH C 31 930 930 HOH TIP . N 5 HOH C 32 931 931 HOH TIP . N 5 HOH C 33 934 934 HOH TIP . N 5 HOH C 34 936 936 HOH TIP . N 5 HOH C 35 940 940 HOH TIP . N 5 HOH C 36 944 944 HOH TIP . N 5 HOH C 37 946 946 HOH TIP . O 5 HOH D 1 821 821 HOH TIP . O 5 HOH D 2 825 825 HOH TIP . O 5 HOH D 3 831 831 HOH TIP . O 5 HOH D 4 835 835 HOH TIP . O 5 HOH D 5 838 838 HOH TIP . O 5 HOH D 6 839 839 HOH TIP . O 5 HOH D 7 840 840 HOH TIP . O 5 HOH D 8 842 842 HOH TIP . O 5 HOH D 9 848 848 HOH TIP . O 5 HOH D 10 853 853 HOH TIP . O 5 HOH D 11 857 857 HOH TIP . O 5 HOH D 12 860 860 HOH TIP . O 5 HOH D 13 865 865 HOH TIP . O 5 HOH D 14 871 871 HOH TIP . O 5 HOH D 15 873 873 HOH TIP . O 5 HOH D 16 878 878 HOH TIP . O 5 HOH D 17 882 882 HOH TIP . O 5 HOH D 18 887 887 HOH TIP . O 5 HOH D 19 890 890 HOH TIP . O 5 HOH D 20 891 891 HOH TIP . O 5 HOH D 21 898 898 HOH TIP . O 5 HOH D 22 905 905 HOH TIP . O 5 HOH D 23 910 910 HOH TIP . O 5 HOH D 24 912 912 HOH TIP . O 5 HOH D 25 917 917 HOH TIP . O 5 HOH D 26 918 918 HOH TIP . O 5 HOH D 27 923 923 HOH TIP . O 5 HOH D 28 938 938 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . K 4 12.09 38.542 -7.133 1 65.56 ? C TRS 807 D 1 HETATM 2 C C1 TRS . . . K 4 11.58 37.873 -5.842 1 65.64 ? C1 TRS 807 D 1 HETATM 3 C C2 TRS . . . K 4 12.288 37.549 -8.116 1 66.45 ? C2 TRS 807 D 1 HETATM 4 C C3 TRS . . . K 4 13.335 39.347 -6.731 1 65.43 ? C3 TRS 807 D 1 HETATM 5 N N TRS . . . K 4 11.058 39.471 -7.617 1 65.22 ? N TRS 807 D 1 HETATM 6 O O1 TRS . . . K 4 12.45 36.961 -5.333 1 66.42 ? O1 TRS 807 D 1 HETATM 7 O O2 TRS . . . K 4 13.351 36.656 -7.967 1 66.52 ? O2 TRS 807 D 1 HETATM 8 O O3 TRS . . . K 4 13.974 40.049 -7.756 1 67 ? O3 TRS 807 D 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #