data_1EZQ # _model_server_result.job_id Z1rMD1EyzszfpWEoCt8SUA _model_server_result.datetime_utc '2024-11-05 14:04:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ezq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":265}' # _entry.id 1EZQ # _exptl.entry_id 1EZQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 458.552 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3-[(3'-AMINOMETHYL-BIPHENYL-4-CARBONYL)-AMINO]-2-(3-CARBAMIMIDOYL-BENZYL)-BUTYRIC ACID METHYL ESTER" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1EZQ _cell.length_a 56.196 _cell.length_b 71.922 _cell.length_c 78.587 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EZQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 12 A CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf2 A SG CYS 27 A CYS 42 1_555 A SG CYS 43 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf3 A SG CYS 108 A CYS 122 1_555 B SG CYS 127 B CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 156 A CYS 168 1_555 A SG CYS 170 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf5 A SG CYS 181 A CYS 191 1_555 A SG CYS 209 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 B SG CYS 84 B CYS 1 1_555 B SG CYS 95 B CYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 B SG CYS 91 B CYS 8 1_555 B SG CYS 104 B CYS 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf8 B SG CYS 106 B CYS 23 1_555 B SG CYS 119 B CYS 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc1 C CA CA . A CA 1 1_555 A OD1 ASP 56 A ASP 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc2 C CA CA . A CA 1 1_555 A O ASN 58 A ASN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc3 C CA CA . A CA 1 1_555 A O GLN 61 A GLN 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? metalc ? metalc4 C CA CA . A CA 1 1_555 A OE1 GLU 66 A GLU 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? metalc ? metalc5 C CA CA . A CA 1 1_555 A OE2 GLU 66 A GLU 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc6 C CA CA . A CA 1 1_555 E O HOH . A HOH 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc7 C CA CA . A CA 1 1_555 E O HOH . A HOH 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? # _chem_comp.formula 'C27 H30 N4 O3' _chem_comp.formula_weight 458.552 _chem_comp.id RPR _chem_comp.mon_nstd_flag . _chem_comp.name "3-[(3'-AMINOMETHYL-BIPHENYL-4-CARBONYL)-AMINO]-2-(3-CARBAMIMIDOYL-BENZYL)-BUTYRIC ACID METHYL ESTER" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms RPR128515 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RPR doub 277 n y C1 C6 RPR sing 278 n y C1 H11 RPR sing 279 n n C2 C3 RPR sing 280 n y C2 C11 RPR sing 281 n y C3 C4 RPR doub 282 n y C3 H31 RPR sing 283 n n C4 C5 RPR sing 284 n y C4 H41 RPR sing 285 n n C5 C6 RPR doub 286 n y C5 H51 RPR sing 287 n n C6 C21 RPR sing 288 n n C7 C8 RPR doub 289 n y C7 C12 RPR sing 290 n y C7 H71 RPR sing 291 n n C8 C9 RPR sing 292 n y C8 C13 RPR sing 293 n n C9 C10 RPR doub 294 n y C9 H91 RPR sing 295 n n C10 C11 RPR sing 296 n y C10 H101 RPR sing 297 n n C11 C12 RPR doub 298 n y C12 H121 RPR sing 299 n n C13 N14 RPR sing 300 n n C13 O33 RPR doub 301 n n N14 C15 RPR sing 302 n n N14 H141 RPR sing 303 n n C15 C16 RPR sing 304 n n C15 C17 RPR sing 305 n n C15 H151 RPR sing 306 n n C16 H161 RPR sing 307 n n C16 H162 RPR sing 308 n n C16 H163 RPR sing 309 n n C17 C18 RPR sing 310 n n C17 C20 RPR sing 311 n n C17 H171 RPR sing 312 n n C18 O19 RPR sing 313 n n C18 O32 RPR doub 314 n n O19 C34 RPR sing 315 n n C20 C28 RPR sing 316 n n C20 H201 RPR sing 317 n n C20 H202 RPR sing 318 n n C21 N22 RPR sing 319 n n C21 H211 RPR sing 320 n n C21 H212 RPR sing 321 n n N22 H221 RPR sing 322 n n N22 H222 RPR sing 323 n n C23 C24 RPR doub 324 n y C23 C28 RPR sing 325 n y C23 H231 RPR sing 326 n n C24 C25 RPR sing 327 n y C24 C29 RPR sing 328 n n C25 C26 RPR doub 329 n y C25 H251 RPR sing 330 n n C26 C27 RPR sing 331 n y C26 H261 RPR sing 332 n n C27 C28 RPR doub 333 n y C27 H271 RPR sing 334 n n C29 N30 RPR sing 335 n n C29 N31 RPR doub 336 n n N30 H301 RPR sing 337 n n N30 H302 RPR sing 338 n n N31 H311 RPR sing 339 n n C34 H341 RPR sing 340 n n C34 H342 RPR sing 341 n n C34 H343 RPR sing 342 n n # _atom_sites.entry_id 1EZQ _atom_sites.fract_transf_matrix[1][1] 0.017795 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013904 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012725 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 1 1 CA CA . D 4 RPR A 1 265 1 RPR RPR . E 5 HOH A 1 266 2 HOH HOH . E 5 HOH A 2 267 3 HOH HOH . E 5 HOH A 3 268 4 HOH HOH . E 5 HOH A 4 269 5 HOH HOH . E 5 HOH A 5 270 6 HOH HOH . E 5 HOH A 6 271 7 HOH HOH . E 5 HOH A 7 272 9 HOH HOH . E 5 HOH A 8 273 10 HOH HOH . E 5 HOH A 9 274 11 HOH HOH . E 5 HOH A 10 275 12 HOH HOH . E 5 HOH A 11 276 13 HOH HOH . E 5 HOH A 12 277 14 HOH HOH . E 5 HOH A 13 278 15 HOH HOH . E 5 HOH A 14 279 16 HOH HOH . E 5 HOH A 15 280 17 HOH HOH . E 5 HOH A 16 281 20 HOH HOH . E 5 HOH A 17 282 21 HOH HOH . E 5 HOH A 18 283 22 HOH HOH . E 5 HOH A 19 284 23 HOH HOH . E 5 HOH A 20 285 24 HOH HOH . E 5 HOH A 21 286 25 HOH HOH . E 5 HOH A 22 287 26 HOH HOH . E 5 HOH A 23 288 27 HOH HOH . E 5 HOH A 24 289 30 HOH HOH . E 5 HOH A 25 290 35 HOH HOH . E 5 HOH A 26 291 37 HOH HOH . E 5 HOH A 27 292 39 HOH HOH . E 5 HOH A 28 293 41 HOH HOH . E 5 HOH A 29 294 43 HOH HOH . E 5 HOH A 30 295 44 HOH HOH . E 5 HOH A 31 296 45 HOH HOH . E 5 HOH A 32 297 46 HOH HOH . E 5 HOH A 33 298 49 HOH HOH . E 5 HOH A 34 299 52 HOH HOH . E 5 HOH A 35 300 53 HOH HOH . E 5 HOH A 36 301 55 HOH HOH . E 5 HOH A 37 302 56 HOH HOH . E 5 HOH A 38 303 57 HOH HOH . E 5 HOH A 39 304 59 HOH HOH . E 5 HOH A 40 305 60 HOH HOH . E 5 HOH A 41 306 61 HOH HOH . E 5 HOH A 42 307 63 HOH HOH . E 5 HOH A 43 308 64 HOH HOH . E 5 HOH A 44 309 66 HOH HOH . E 5 HOH A 45 310 68 HOH HOH . E 5 HOH A 46 311 70 HOH HOH . E 5 HOH A 47 312 72 HOH HOH . E 5 HOH A 48 313 73 HOH HOH . E 5 HOH A 49 314 74 HOH HOH . E 5 HOH A 50 315 75 HOH HOH . E 5 HOH A 51 316 76 HOH HOH . E 5 HOH A 52 317 77 HOH HOH . E 5 HOH A 53 318 78 HOH HOH . E 5 HOH A 54 319 79 HOH HOH . E 5 HOH A 55 320 81 HOH HOH . E 5 HOH A 56 321 83 HOH HOH . E 5 HOH A 57 322 84 HOH HOH . E 5 HOH A 58 323 87 HOH HOH . E 5 HOH A 59 324 88 HOH HOH . E 5 HOH A 60 325 89 HOH HOH . E 5 HOH A 61 326 90 HOH HOH . E 5 HOH A 62 327 91 HOH HOH . E 5 HOH A 63 328 92 HOH HOH . E 5 HOH A 64 329 93 HOH HOH . E 5 HOH A 65 330 94 HOH HOH . E 5 HOH A 66 331 95 HOH HOH . E 5 HOH A 67 332 96 HOH HOH . E 5 HOH A 68 333 97 HOH HOH . E 5 HOH A 69 334 98 HOH HOH . E 5 HOH A 70 335 99 HOH HOH . E 5 HOH A 71 336 100 HOH HOH . E 5 HOH A 72 337 101 HOH HOH . E 5 HOH A 73 338 104 HOH HOH . E 5 HOH A 74 339 105 HOH HOH . E 5 HOH A 75 340 106 HOH HOH . E 5 HOH A 76 341 107 HOH HOH . E 5 HOH A 77 342 108 HOH HOH . E 5 HOH A 78 343 109 HOH HOH . E 5 HOH A 79 344 110 HOH HOH . E 5 HOH A 80 345 111 HOH HOH . E 5 HOH A 81 346 112 HOH HOH . E 5 HOH A 82 347 113 HOH HOH . E 5 HOH A 83 348 115 HOH HOH . E 5 HOH A 84 349 116 HOH HOH . E 5 HOH A 85 350 117 HOH HOH . E 5 HOH A 86 351 118 HOH HOH . E 5 HOH A 87 352 120 HOH HOH . E 5 HOH A 88 353 121 HOH HOH . E 5 HOH A 89 354 122 HOH HOH . E 5 HOH A 90 355 124 HOH HOH . E 5 HOH A 91 356 126 HOH HOH . E 5 HOH A 92 357 127 HOH HOH . E 5 HOH A 93 358 128 HOH HOH . F 5 HOH B 1 52 18 HOH HOH . F 5 HOH B 2 53 19 HOH HOH . F 5 HOH B 3 54 28 HOH HOH . F 5 HOH B 4 55 34 HOH HOH . F 5 HOH B 5 56 48 HOH HOH . F 5 HOH B 6 57 50 HOH HOH . F 5 HOH B 7 58 51 HOH HOH . F 5 HOH B 8 59 54 HOH HOH . F 5 HOH B 9 60 80 HOH HOH . F 5 HOH B 10 61 82 HOH HOH . F 5 HOH B 11 62 102 HOH HOH . F 5 HOH B 12 63 103 HOH HOH . F 5 HOH B 13 64 114 HOH HOH . F 5 HOH B 14 65 119 HOH HOH . F 5 HOH B 15 66 123 HOH HOH . F 5 HOH B 16 67 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RPR . . . D 4 7.226 0.187 17.759 1 35.6 ? C1 RPR 265 A 1 HETATM 2 C C2 RPR . . . D 4 7.943 0.841 18.792 1 31.92 ? C2 RPR 265 A 1 HETATM 3 C C3 RPR . . . D 4 9.333 0.583 18.892 1 34.09 ? C3 RPR 265 A 1 HETATM 4 C C4 RPR . . . D 4 9.999 -0.293 17.998 1 37.51 ? C4 RPR 265 A 1 HETATM 5 C C5 RPR . . . D 4 9.275 -0.942 16.97 1 38.21 ? C5 RPR 265 A 1 HETATM 6 C C6 RPR . . . D 4 7.88 -0.701 16.848 1 36.56 ? C6 RPR 265 A 1 HETATM 7 C C7 RPR . . . D 4 7.136 3.972 20.903 1 32.73 ? C7 RPR 265 A 1 HETATM 8 C C8 RPR . . . D 4 5.942 3.598 21.586 1 33.84 ? C8 RPR 265 A 1 HETATM 9 C C9 RPR . . . D 4 5.412 2.294 21.334 1 34.26 ? C9 RPR 265 A 1 HETATM 10 C C10 RPR . . . D 4 6.062 1.408 20.432 1 31.47 ? C10 RPR 265 A 1 HETATM 11 C C11 RPR . . . D 4 7.249 1.784 19.755 1 34.23 ? C11 RPR 265 A 1 HETATM 12 C C12 RPR . . . D 4 7.77 3.08 20.009 1 33.19 ? C12 RPR 265 A 1 HETATM 13 C C13 RPR . . . D 4 5.273 4.535 22.531 1 33.04 ? C13 RPR 265 A 1 HETATM 14 N N14 RPR . . . D 4 5.485 5.874 22.293 1 28.99 ? N14 RPR 265 A 1 HETATM 15 C C15 RPR . . . D 4 4.913 6.941 23.124 1 25.56 ? C15 RPR 265 A 1 HETATM 16 C C16 RPR . . . D 4 4.446 8.075 22.197 1 30.29 ? C16 RPR 265 A 1 HETATM 17 C C17 RPR . . . D 4 5.991 7.41 24.173 1 25.15 ? C17 RPR 265 A 1 HETATM 18 C C18 RPR . . . D 4 5.371 8.53 25.053 1 26.5 ? C18 RPR 265 A 1 HETATM 19 O O19 RPR . . . D 4 4.105 8.152 25.593 1 24.48 ? O19 RPR 265 A 1 HETATM 20 C C20 RPR . . . D 4 7.293 7.922 23.454 1 21.59 ? C20 RPR 265 A 1 HETATM 21 C C21 RPR . . . D 4 7.091 -1.38 15.764 1 35.34 ? C21 RPR 265 A 1 HETATM 22 N N22 RPR . . . D 4 6.726 -0.438 14.7 1 34.95 ? N22 RPR 265 A 1 HETATM 23 C C23 RPR . . . D 4 8.814 7.376 25.475 1 13.15 ? C23 RPR 265 A 1 HETATM 24 C C24 RPR . . . D 4 9.987 7.613 26.234 1 8.52 ? C24 RPR 265 A 1 HETATM 25 C C25 RPR . . . D 4 10.893 8.626 25.819 1 13.72 ? C25 RPR 265 A 1 HETATM 26 C C26 RPR . . . D 4 10.626 9.384 24.663 1 13.91 ? C26 RPR 265 A 1 HETATM 27 C C27 RPR . . . D 4 9.458 9.141 23.914 1 19.15 ? C27 RPR 265 A 1 HETATM 28 C C28 RPR . . . D 4 8.536 8.136 24.306 1 18.59 ? C28 RPR 265 A 1 HETATM 29 C C29 RPR . . . D 4 10.269 6.828 27.441 1 15.12 ? C29 RPR 265 A 1 HETATM 30 N N30 RPR . . . D 4 11.537 6.657 27.865 1 15.8 ? N30 RPR 265 A 1 HETATM 31 N N31 RPR . . . D 4 9.264 6.276 28.136 1 15.35 ? N31 RPR 265 A 1 HETATM 32 O O32 RPR . . . D 4 5.833 9.628 25.193 1 28.52 ? O32 RPR 265 A 1 HETATM 33 O O33 RPR . . . D 4 4.577 4.147 23.476 1 34.58 ? O33 RPR 265 A 1 HETATM 34 C C34 RPR . . . D 4 3.321 9.116 26.312 1 22.13 ? C34 RPR 265 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 226 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 34 #