data_1F06 # _model_server_result.job_id VHbzVHJWVZ2kOnlsxhdxQQ _model_server_result.datetime_utc '2024-12-04 14:53:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1f06 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 1F06 # _exptl.entry_id 1F06 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.52 _cell.angle_gamma 90 _cell.entry_id 1F06 _cell.length_a 75.547 _cell.length_b 65.591 _cell.length_c 84.281 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1F06 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA,PQS dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F 1 1 B,D,E,G 2 1 A,B,C,D,E,F,G 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 262 n n PA O2A NDP sing 263 n n PA O5B NDP sing 264 n n PA O3 NDP sing 265 n n O2A HOA2 NDP sing 266 n n O5B C5B NDP sing 267 n n C5B C4B NDP sing 268 n n C5B H51A NDP sing 269 n n C5B H52A NDP sing 270 n n C4B O4B NDP sing 271 n n C4B C3B NDP sing 272 n n C4B H4B NDP sing 273 n n O4B C1B NDP sing 274 n n C3B O3B NDP sing 275 n n C3B C2B NDP sing 276 n n C3B H3B NDP sing 277 n n O3B HO3A NDP sing 278 n n C2B O2B NDP sing 279 n n C2B C1B NDP sing 280 n n C2B H2B NDP sing 281 n n O2B P2B NDP sing 282 n n C1B N9A NDP sing 283 n n C1B H1B NDP sing 284 n n N9A C8A NDP sing 285 n y N9A C4A NDP sing 286 n y C8A N7A NDP doub 287 n y C8A H8A NDP sing 288 n n N7A C5A NDP sing 289 n y C5A C6A NDP sing 290 n y C5A C4A NDP doub 291 n y C6A N6A NDP sing 292 n n C6A N1A NDP doub 293 n y N6A H61A NDP sing 294 n n N6A H62A NDP sing 295 n n N1A C2A NDP sing 296 n y C2A N3A NDP doub 297 n y C2A H2A NDP sing 298 n n N3A C4A NDP sing 299 n y O3 PN NDP sing 300 n n PN O1N NDP doub 301 n n PN O2N NDP sing 302 n n PN O5D NDP sing 303 n n O2N H21N NDP sing 304 n n O5D C5D NDP sing 305 n n C5D C4D NDP sing 306 n n C5D H51N NDP sing 307 n n C5D H52N NDP sing 308 n n C4D O4D NDP sing 309 n n C4D C3D NDP sing 310 n n C4D H4D NDP sing 311 n n O4D C1D NDP sing 312 n n C3D O3D NDP sing 313 n n C3D C2D NDP sing 314 n n C3D H3D NDP sing 315 n n O3D HO3N NDP sing 316 n n C2D O2D NDP sing 317 n n C2D C1D NDP sing 318 n n C2D H2D NDP sing 319 n n O2D HO2N NDP sing 320 n n C1D N1N NDP sing 321 n n C1D H1D NDP sing 322 n n N1N C2N NDP sing 323 n n N1N C6N NDP sing 324 n n C2N C3N NDP doub 325 n n C2N H2N NDP sing 326 n n C3N C7N NDP sing 327 n n C3N C4N NDP sing 328 n n C7N O7N NDP doub 329 n n C7N N7N NDP sing 330 n n N7N H71N NDP sing 331 n n N7N H72N NDP sing 332 n n C4N C5N NDP sing 333 n n C4N H41N NDP sing 334 n n C4N H42N NDP sing 335 n n C5N C6N NDP doub 336 n n C5N H5N NDP sing 337 n n C6N H6N NDP sing 338 n n P2B O1X NDP doub 339 n n P2B O2X NDP sing 340 n n P2B O3X NDP sing 341 n n O2X HOP2 NDP sing 342 n n O3X HOP3 NDP sing 343 n n # _atom_sites.entry_id 1F06 _atom_sites.fract_transf_matrix[1][1] 0.013237 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003926 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015246 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012376 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 401 401 NDP NDP . D 2 NDP B 1 901 901 NDP NDP . E 3 2NP B 1 950 950 2NP ASI . F 4 HOH A 1 1001 1001 HOH TIP . F 4 HOH A 2 1007 1007 HOH TIP . F 4 HOH A 3 1008 1008 HOH TIP . F 4 HOH A 4 1017 1017 HOH TIP . F 4 HOH A 5 1019 1019 HOH TIP . F 4 HOH A 6 1020 1020 HOH TIP . F 4 HOH A 7 1022 1022 HOH TIP . F 4 HOH A 8 1025 1025 HOH TIP . F 4 HOH A 9 1030 1030 HOH TIP . F 4 HOH A 10 1039 1039 HOH TIP . F 4 HOH A 11 1040 1040 HOH TIP . F 4 HOH A 12 1042 1042 HOH TIP . F 4 HOH A 13 1047 1047 HOH TIP . F 4 HOH A 14 1050 1050 HOH TIP . F 4 HOH A 15 1053 1053 HOH TIP . F 4 HOH A 16 1054 1054 HOH TIP . F 4 HOH A 17 1056 1056 HOH TIP . F 4 HOH A 18 1058 1058 HOH TIP . F 4 HOH A 19 1063 1063 HOH TIP . F 4 HOH A 20 1065 1065 HOH TIP . F 4 HOH A 21 1066 1066 HOH TIP . F 4 HOH A 22 1068 1068 HOH TIP . F 4 HOH A 23 1074 1074 HOH TIP . F 4 HOH A 24 1076 1076 HOH TIP . F 4 HOH A 25 1077 1077 HOH TIP . F 4 HOH A 26 1078 1078 HOH TIP . F 4 HOH A 27 1080 1080 HOH TIP . F 4 HOH A 28 1081 1081 HOH TIP . F 4 HOH A 29 1088 1088 HOH TIP . F 4 HOH A 30 1092 1092 HOH TIP . F 4 HOH A 31 1096 1096 HOH TIP . F 4 HOH A 32 1098 1098 HOH TIP . F 4 HOH A 33 1099 1099 HOH TIP . F 4 HOH A 34 1102 1102 HOH TIP . F 4 HOH A 35 1108 1108 HOH TIP . F 4 HOH A 36 1112 1112 HOH TIP . F 4 HOH A 37 1118 1118 HOH TIP . F 4 HOH A 38 1121 1121 HOH TIP . F 4 HOH A 39 1131 1131 HOH TIP . F 4 HOH A 40 1135 1135 HOH TIP . F 4 HOH A 41 1136 1136 HOH TIP . F 4 HOH A 42 1137 1137 HOH TIP . F 4 HOH A 43 1141 1141 HOH TIP . F 4 HOH A 44 1145 1145 HOH TIP . F 4 HOH A 45 1146 1146 HOH TIP . F 4 HOH A 46 1148 1148 HOH TIP . F 4 HOH A 47 1152 1152 HOH TIP . F 4 HOH A 48 1153 1153 HOH TIP . F 4 HOH A 49 1159 1159 HOH TIP . F 4 HOH A 50 1160 1160 HOH TIP . F 4 HOH A 51 1161 1161 HOH TIP . F 4 HOH A 52 1168 1168 HOH TIP . F 4 HOH A 53 1176 1176 HOH TIP . F 4 HOH A 54 1180 1180 HOH TIP . G 4 HOH B 1 1002 1002 HOH TIP . G 4 HOH B 2 1005 1005 HOH TIP . G 4 HOH B 3 1010 1010 HOH TIP . G 4 HOH B 4 1012 1012 HOH TIP . G 4 HOH B 5 1015 1015 HOH TIP . G 4 HOH B 6 1018 1018 HOH TIP . G 4 HOH B 7 1021 1021 HOH TIP . G 4 HOH B 8 1029 1029 HOH TIP . G 4 HOH B 9 1033 1033 HOH TIP . G 4 HOH B 10 1034 1034 HOH TIP . G 4 HOH B 11 1036 1036 HOH TIP . G 4 HOH B 12 1037 1037 HOH TIP . G 4 HOH B 13 1038 1038 HOH TIP . G 4 HOH B 14 1041 1041 HOH TIP . G 4 HOH B 15 1048 1048 HOH TIP . G 4 HOH B 16 1049 1049 HOH TIP . G 4 HOH B 17 1051 1051 HOH TIP . G 4 HOH B 18 1052 1052 HOH TIP . G 4 HOH B 19 1055 1055 HOH TIP . G 4 HOH B 20 1067 1067 HOH TIP . G 4 HOH B 21 1070 1070 HOH TIP . G 4 HOH B 22 1073 1073 HOH TIP . G 4 HOH B 23 1082 1082 HOH TIP . G 4 HOH B 24 1083 1083 HOH TIP . G 4 HOH B 25 1089 1089 HOH TIP . G 4 HOH B 26 1093 1093 HOH TIP . G 4 HOH B 27 1101 1101 HOH TIP . G 4 HOH B 28 1105 1105 HOH TIP . G 4 HOH B 29 1117 1117 HOH TIP . G 4 HOH B 30 1124 1124 HOH TIP . G 4 HOH B 31 1125 1125 HOH TIP . G 4 HOH B 32 1132 1132 HOH TIP . G 4 HOH B 33 1133 1133 HOH TIP . G 4 HOH B 34 1134 1134 HOH TIP . G 4 HOH B 35 1138 1138 HOH TIP . G 4 HOH B 36 1139 1139 HOH TIP . G 4 HOH B 37 1140 1140 HOH TIP . G 4 HOH B 38 1142 1142 HOH TIP . G 4 HOH B 39 1143 1143 HOH TIP . G 4 HOH B 40 1144 1144 HOH TIP . G 4 HOH B 41 1147 1147 HOH TIP . G 4 HOH B 42 1149 1149 HOH TIP . G 4 HOH B 43 1150 1150 HOH TIP . G 4 HOH B 44 1151 1151 HOH TIP . G 4 HOH B 45 1154 1154 HOH TIP . G 4 HOH B 46 1156 1156 HOH TIP . G 4 HOH B 47 1157 1157 HOH TIP . G 4 HOH B 48 1158 1158 HOH TIP . G 4 HOH B 49 1162 1162 HOH TIP . G 4 HOH B 50 1163 1163 HOH TIP . G 4 HOH B 51 1165 1165 HOH TIP . G 4 HOH B 52 1166 1166 HOH TIP . G 4 HOH B 53 1167 1167 HOH TIP . G 4 HOH B 54 1169 1169 HOH TIP . G 4 HOH B 55 1170 1170 HOH TIP . G 4 HOH B 56 1171 1171 HOH TIP . G 4 HOH B 57 1173 1173 HOH TIP . G 4 HOH B 58 1174 1174 HOH TIP . G 4 HOH B 59 1175 1175 HOH TIP . G 4 HOH B 60 1177 1177 HOH TIP . G 4 HOH B 61 1178 1178 HOH TIP . G 4 HOH B 62 1179 1179 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . C 2 -4.434 61.749 7.898 1 31.2 ? PA NDP 401 A 1 HETATM 2 O O1A NDP . . . C 2 -4.893 62.675 8.976 1 34.34 ? O1A NDP 401 A 1 HETATM 3 O O2A NDP . . . C 2 -5.305 61.526 6.719 1 32.01 ? O2A NDP 401 A 1 HETATM 4 O O5B NDP . . . C 2 -2.973 62.129 7.462 1 33.7 ? O5B NDP 401 A 1 HETATM 5 C C5B NDP . . . C 2 -2.591 61.71 6.071 1 34.1 ? C5B NDP 401 A 1 HETATM 6 C C4B NDP . . . C 2 -1.891 62.669 5.149 1 32.32 ? C4B NDP 401 A 1 HETATM 7 O O4B NDP . . . C 2 -2.91 63.53 4.544 1 32.38 ? O4B NDP 401 A 1 HETATM 8 C C3B NDP . . . C 2 -1.016 63.668 5.961 1 32.35 ? C3B NDP 401 A 1 HETATM 9 O O3B NDP . . . C 2 0.307 63.207 5.788 1 32.54 ? O3B NDP 401 A 1 HETATM 10 C C2B NDP . . . C 2 -1.141 64.926 5.105 1 32.21 ? C2B NDP 401 A 1 HETATM 11 O O2B NDP . . . C 2 -0.049 65.304 4.253 1 33.85 ? O2B NDP 401 A 1 HETATM 12 C C1B NDP . . . C 2 -2.542 64.917 4.635 1 32.95 ? C1B NDP 401 A 1 HETATM 13 N N9A NDP . . . C 2 -3.557 65.873 5.104 1 34.82 ? N9A NDP 401 A 1 HETATM 14 C C8A NDP . . . C 2 -3.696 65.787 6.45 1 34.77 ? C8A NDP 401 A 1 HETATM 15 N N7A NDP . . . C 2 -4.651 66.603 6.961 1 33.45 ? N7A NDP 401 A 1 HETATM 16 C C5A NDP . . . C 2 -5.053 67.246 5.86 1 36.58 ? C5A NDP 401 A 1 HETATM 17 C C6A NDP . . . C 2 -5.981 68.243 5.819 1 37.33 ? C6A NDP 401 A 1 HETATM 18 N N6A NDP . . . C 2 -6.521 68.759 6.929 1 33.64 ? N6A NDP 401 A 1 HETATM 19 N N1A NDP . . . C 2 -6.351 68.758 4.621 1 37.1 ? N1A NDP 401 A 1 HETATM 20 C C2A NDP . . . C 2 -5.715 68.228 3.533 1 39.5 ? C2A NDP 401 A 1 HETATM 21 N N3A NDP . . . C 2 -4.687 67.337 3.535 1 36.36 ? N3A NDP 401 A 1 HETATM 22 C C4A NDP . . . C 2 -4.429 66.818 4.754 1 36.83 ? C4A NDP 401 A 1 HETATM 23 O O3 NDP . . . C 2 -4.188 60.329 8.577 1 34.35 ? O3 NDP 401 A 1 HETATM 24 P PN NDP . . . C 2 -3.235 59.893 9.781 1 30.32 ? PN NDP 401 A 1 HETATM 25 O O1N NDP . . . C 2 -4.029 59.066 10.709 1 35.92 ? O1N NDP 401 A 1 HETATM 26 O O2N NDP . . . C 2 -2.553 61.097 10.316 1 32.95 ? O2N NDP 401 A 1 HETATM 27 O O5D NDP . . . C 2 -2.229 59.021 8.937 1 35 ? O5D NDP 401 A 1 HETATM 28 C C5D NDP . . . C 2 -1.762 57.795 9.623 1 34.28 ? C5D NDP 401 A 1 HETATM 29 C C4D NDP . . . C 2 -1.286 56.636 8.81 1 36.85 ? C4D NDP 401 A 1 HETATM 30 O O4D NDP . . . C 2 -0.58 55.725 9.67 1 37.78 ? O4D NDP 401 A 1 HETATM 31 C C3D NDP . . . C 2 -2.393 55.854 8.099 1 36.47 ? C3D NDP 401 A 1 HETATM 32 O O3D NDP . . . C 2 -2.313 55.963 6.695 1 33.12 ? O3D NDP 401 A 1 HETATM 33 C C2D NDP . . . C 2 -2.238 54.389 8.595 1 36.36 ? C2D NDP 401 A 1 HETATM 34 O O2D NDP . . . C 2 -2.095 53.478 7.529 1 36.18 ? O2D NDP 401 A 1 HETATM 35 C C1D NDP . . . C 2 -0.967 54.369 9.47 1 35.83 ? C1D NDP 401 A 1 HETATM 36 N N1N NDP . . . C 2 -1.172 53.806 10.816 1 30.74 ? N1N NDP 401 A 1 HETATM 37 C C2N NDP . . . C 2 -0.448 52.72 11.184 1 30.08 ? C2N NDP 401 A 1 HETATM 38 C C3N NDP . . . C 2 -0.549 52.069 12.362 1 29.48 ? C3N NDP 401 A 1 HETATM 39 C C7N NDP . . . C 2 0.201 50.943 12.719 1 24.55 ? C7N NDP 401 A 1 HETATM 40 O O7N NDP . . . C 2 0.015 50.356 14.025 1 18.74 ? O7N NDP 401 A 1 HETATM 41 N N7N NDP . . . C 2 1.042 50.487 11.793 1 18.37 ? N7N NDP 401 A 1 HETATM 42 C C4N NDP . . . C 2 -1.482 52.644 13.197 1 29.29 ? C4N NDP 401 A 1 HETATM 43 C C5N NDP . . . C 2 -2.275 53.767 12.907 1 27.98 ? C5N NDP 401 A 1 HETATM 44 C C6N NDP . . . C 2 -2.09 54.37 11.656 1 28.97 ? C6N NDP 401 A 1 HETATM 45 P P2B NDP . . . C 2 0.339 66.817 3.962 1 29.68 ? P2B NDP 401 A 1 HETATM 46 O O1X NDP . . . C 2 -0.851 67.433 3.318 1 30.04 ? O1X NDP 401 A 1 HETATM 47 O O2X NDP . . . C 2 0.652 67.421 5.279 1 32.63 ? O2X NDP 401 A 1 HETATM 48 O O3X NDP . . . C 2 1.516 66.751 3.078 1 26.9 ? O3X NDP 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 483 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 48 #