data_1F06
#
_model_server_result.job_id            TtugVpyDQ7iVBOqDP_MlDQ 
_model_server_result.datetime_utc      '2024-12-04 14:34:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1f06 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":901}' 
#
_entry.id    1F06 
#
_exptl.entry_id    1F06 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.52 
_cell.angle_gamma         90 
_cell.entry_id            1F06 
_cell.length_a            75.547 
_cell.length_b            65.591 
_cell.length_c            84.281 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1F06 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA,PQS dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,F 1 1 
B,D,E,G 2 1 
A,B,C,D,E,F,G 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 262 n n 
PA O2A NDP sing 263 n n 
PA O5B NDP sing 264 n n 
PA O3 NDP sing 265 n n 
O2A HOA2 NDP sing 266 n n 
O5B C5B NDP sing 267 n n 
C5B C4B NDP sing 268 n n 
C5B H51A NDP sing 269 n n 
C5B H52A NDP sing 270 n n 
C4B O4B NDP sing 271 n n 
C4B C3B NDP sing 272 n n 
C4B H4B NDP sing 273 n n 
O4B C1B NDP sing 274 n n 
C3B O3B NDP sing 275 n n 
C3B C2B NDP sing 276 n n 
C3B H3B NDP sing 277 n n 
O3B HO3A NDP sing 278 n n 
C2B O2B NDP sing 279 n n 
C2B C1B NDP sing 280 n n 
C2B H2B NDP sing 281 n n 
O2B P2B NDP sing 282 n n 
C1B N9A NDP sing 283 n n 
C1B H1B NDP sing 284 n n 
N9A C8A NDP sing 285 n y 
N9A C4A NDP sing 286 n y 
C8A N7A NDP doub 287 n y 
C8A H8A NDP sing 288 n n 
N7A C5A NDP sing 289 n y 
C5A C6A NDP sing 290 n y 
C5A C4A NDP doub 291 n y 
C6A N6A NDP sing 292 n n 
C6A N1A NDP doub 293 n y 
N6A H61A NDP sing 294 n n 
N6A H62A NDP sing 295 n n 
N1A C2A NDP sing 296 n y 
C2A N3A NDP doub 297 n y 
C2A H2A NDP sing 298 n n 
N3A C4A NDP sing 299 n y 
O3 PN NDP sing 300 n n 
PN O1N NDP doub 301 n n 
PN O2N NDP sing 302 n n 
PN O5D NDP sing 303 n n 
O2N H21N NDP sing 304 n n 
O5D C5D NDP sing 305 n n 
C5D C4D NDP sing 306 n n 
C5D H51N NDP sing 307 n n 
C5D H52N NDP sing 308 n n 
C4D O4D NDP sing 309 n n 
C4D C3D NDP sing 310 n n 
C4D H4D NDP sing 311 n n 
O4D C1D NDP sing 312 n n 
C3D O3D NDP sing 313 n n 
C3D C2D NDP sing 314 n n 
C3D H3D NDP sing 315 n n 
O3D HO3N NDP sing 316 n n 
C2D O2D NDP sing 317 n n 
C2D C1D NDP sing 318 n n 
C2D H2D NDP sing 319 n n 
O2D HO2N NDP sing 320 n n 
C1D N1N NDP sing 321 n n 
C1D H1D NDP sing 322 n n 
N1N C2N NDP sing 323 n n 
N1N C6N NDP sing 324 n n 
C2N C3N NDP doub 325 n n 
C2N H2N NDP sing 326 n n 
C3N C7N NDP sing 327 n n 
C3N C4N NDP sing 328 n n 
C7N O7N NDP doub 329 n n 
C7N N7N NDP sing 330 n n 
N7N H71N NDP sing 331 n n 
N7N H72N NDP sing 332 n n 
C4N C5N NDP sing 333 n n 
C4N H41N NDP sing 334 n n 
C4N H42N NDP sing 335 n n 
C5N C6N NDP doub 336 n n 
C5N H5N NDP sing 337 n n 
C6N H6N NDP sing 338 n n 
P2B O1X NDP doub 339 n n 
P2B O2X NDP sing 340 n n 
P2B O3X NDP sing 341 n n 
O2X HOP2 NDP sing 342 n n 
O3X HOP3 NDP sing 343 n n 
#
_atom_sites.entry_id                     1F06 
_atom_sites.fract_transf_matrix[1][1]    0.013237 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003926 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015246 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012376 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NDP A 1 401 401 NDP NDP . 
D 2 NDP B 1 901 901 NDP NDP . 
E 3 2NP B 1 950 950 2NP ASI . 
F 4 HOH A 1 1001 1001 HOH TIP . 
F 4 HOH A 2 1007 1007 HOH TIP . 
F 4 HOH A 3 1008 1008 HOH TIP . 
F 4 HOH A 4 1017 1017 HOH TIP . 
F 4 HOH A 5 1019 1019 HOH TIP . 
F 4 HOH A 6 1020 1020 HOH TIP . 
F 4 HOH A 7 1022 1022 HOH TIP . 
F 4 HOH A 8 1025 1025 HOH TIP . 
F 4 HOH A 9 1030 1030 HOH TIP . 
F 4 HOH A 10 1039 1039 HOH TIP . 
F 4 HOH A 11 1040 1040 HOH TIP . 
F 4 HOH A 12 1042 1042 HOH TIP . 
F 4 HOH A 13 1047 1047 HOH TIP . 
F 4 HOH A 14 1050 1050 HOH TIP . 
F 4 HOH A 15 1053 1053 HOH TIP . 
F 4 HOH A 16 1054 1054 HOH TIP . 
F 4 HOH A 17 1056 1056 HOH TIP . 
F 4 HOH A 18 1058 1058 HOH TIP . 
F 4 HOH A 19 1063 1063 HOH TIP . 
F 4 HOH A 20 1065 1065 HOH TIP . 
F 4 HOH A 21 1066 1066 HOH TIP . 
F 4 HOH A 22 1068 1068 HOH TIP . 
F 4 HOH A 23 1074 1074 HOH TIP . 
F 4 HOH A 24 1076 1076 HOH TIP . 
F 4 HOH A 25 1077 1077 HOH TIP . 
F 4 HOH A 26 1078 1078 HOH TIP . 
F 4 HOH A 27 1080 1080 HOH TIP . 
F 4 HOH A 28 1081 1081 HOH TIP . 
F 4 HOH A 29 1088 1088 HOH TIP . 
F 4 HOH A 30 1092 1092 HOH TIP . 
F 4 HOH A 31 1096 1096 HOH TIP . 
F 4 HOH A 32 1098 1098 HOH TIP . 
F 4 HOH A 33 1099 1099 HOH TIP . 
F 4 HOH A 34 1102 1102 HOH TIP . 
F 4 HOH A 35 1108 1108 HOH TIP . 
F 4 HOH A 36 1112 1112 HOH TIP . 
F 4 HOH A 37 1118 1118 HOH TIP . 
F 4 HOH A 38 1121 1121 HOH TIP . 
F 4 HOH A 39 1131 1131 HOH TIP . 
F 4 HOH A 40 1135 1135 HOH TIP . 
F 4 HOH A 41 1136 1136 HOH TIP . 
F 4 HOH A 42 1137 1137 HOH TIP . 
F 4 HOH A 43 1141 1141 HOH TIP . 
F 4 HOH A 44 1145 1145 HOH TIP . 
F 4 HOH A 45 1146 1146 HOH TIP . 
F 4 HOH A 46 1148 1148 HOH TIP . 
F 4 HOH A 47 1152 1152 HOH TIP . 
F 4 HOH A 48 1153 1153 HOH TIP . 
F 4 HOH A 49 1159 1159 HOH TIP . 
F 4 HOH A 50 1160 1160 HOH TIP . 
F 4 HOH A 51 1161 1161 HOH TIP . 
F 4 HOH A 52 1168 1168 HOH TIP . 
F 4 HOH A 53 1176 1176 HOH TIP . 
F 4 HOH A 54 1180 1180 HOH TIP . 
G 4 HOH B 1 1002 1002 HOH TIP . 
G 4 HOH B 2 1005 1005 HOH TIP . 
G 4 HOH B 3 1010 1010 HOH TIP . 
G 4 HOH B 4 1012 1012 HOH TIP . 
G 4 HOH B 5 1015 1015 HOH TIP . 
G 4 HOH B 6 1018 1018 HOH TIP . 
G 4 HOH B 7 1021 1021 HOH TIP . 
G 4 HOH B 8 1029 1029 HOH TIP . 
G 4 HOH B 9 1033 1033 HOH TIP . 
G 4 HOH B 10 1034 1034 HOH TIP . 
G 4 HOH B 11 1036 1036 HOH TIP . 
G 4 HOH B 12 1037 1037 HOH TIP . 
G 4 HOH B 13 1038 1038 HOH TIP . 
G 4 HOH B 14 1041 1041 HOH TIP . 
G 4 HOH B 15 1048 1048 HOH TIP . 
G 4 HOH B 16 1049 1049 HOH TIP . 
G 4 HOH B 17 1051 1051 HOH TIP . 
G 4 HOH B 18 1052 1052 HOH TIP . 
G 4 HOH B 19 1055 1055 HOH TIP . 
G 4 HOH B 20 1067 1067 HOH TIP . 
G 4 HOH B 21 1070 1070 HOH TIP . 
G 4 HOH B 22 1073 1073 HOH TIP . 
G 4 HOH B 23 1082 1082 HOH TIP . 
G 4 HOH B 24 1083 1083 HOH TIP . 
G 4 HOH B 25 1089 1089 HOH TIP . 
G 4 HOH B 26 1093 1093 HOH TIP . 
G 4 HOH B 27 1101 1101 HOH TIP . 
G 4 HOH B 28 1105 1105 HOH TIP . 
G 4 HOH B 29 1117 1117 HOH TIP . 
G 4 HOH B 30 1124 1124 HOH TIP . 
G 4 HOH B 31 1125 1125 HOH TIP . 
G 4 HOH B 32 1132 1132 HOH TIP . 
G 4 HOH B 33 1133 1133 HOH TIP . 
G 4 HOH B 34 1134 1134 HOH TIP . 
G 4 HOH B 35 1138 1138 HOH TIP . 
G 4 HOH B 36 1139 1139 HOH TIP . 
G 4 HOH B 37 1140 1140 HOH TIP . 
G 4 HOH B 38 1142 1142 HOH TIP . 
G 4 HOH B 39 1143 1143 HOH TIP . 
G 4 HOH B 40 1144 1144 HOH TIP . 
G 4 HOH B 41 1147 1147 HOH TIP . 
G 4 HOH B 42 1149 1149 HOH TIP . 
G 4 HOH B 43 1150 1150 HOH TIP . 
G 4 HOH B 44 1151 1151 HOH TIP . 
G 4 HOH B 45 1154 1154 HOH TIP . 
G 4 HOH B 46 1156 1156 HOH TIP . 
G 4 HOH B 47 1157 1157 HOH TIP . 
G 4 HOH B 48 1158 1158 HOH TIP . 
G 4 HOH B 49 1162 1162 HOH TIP . 
G 4 HOH B 50 1163 1163 HOH TIP . 
G 4 HOH B 51 1165 1165 HOH TIP . 
G 4 HOH B 52 1166 1166 HOH TIP . 
G 4 HOH B 53 1167 1167 HOH TIP . 
G 4 HOH B 54 1169 1169 HOH TIP . 
G 4 HOH B 55 1170 1170 HOH TIP . 
G 4 HOH B 56 1171 1171 HOH TIP . 
G 4 HOH B 57 1173 1173 HOH TIP . 
G 4 HOH B 58 1174 1174 HOH TIP . 
G 4 HOH B 59 1175 1175 HOH TIP . 
G 4 HOH B 60 1177 1177 HOH TIP . 
G 4 HOH B 61 1178 1178 HOH TIP . 
G 4 HOH B 62 1179 1179 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . D 2 16.785 21.169 39.967 1 18.46 ? PA NDP 901 B 1 
HETATM 2 O O1A NDP . . . D 2 15.68 20.265 39.625 1 17.08 ? O1A NDP 901 B 1 
HETATM 3 O O2A NDP . . . D 2 17.201 21.226 41.366 1 18.08 ? O2A NDP 901 B 1 
HETATM 4 O O5B NDP . . . D 2 17.995 20.907 38.993 1 18.47 ? O5B NDP 901 B 1 
HETATM 5 C C5B NDP . . . D 2 19.312 21.503 39.39 1 16.11 ? C5B NDP 901 B 1 
HETATM 6 C C4B NDP . . . D 2 20.594 20.716 39.191 1 19.51 ? C4B NDP 901 B 1 
HETATM 7 O O4B NDP . . . D 2 20.747 19.778 40.31 1 17.9 ? O4B NDP 901 B 1 
HETATM 8 C C3B NDP . . . D 2 20.475 19.769 37.949 1 18.67 ? C3B NDP 901 B 1 
HETATM 9 O O3B NDP . . . D 2 21.252 20.4 36.959 1 20.66 ? O3B NDP 901 B 1 
HETATM 10 C C2B NDP . . . D 2 21.292 18.567 38.397 1 17.9 ? C2B NDP 901 B 1 
HETATM 11 O O2B NDP . . . D 2 22.582 18.374 37.819 1 19.59 ? O2B NDP 901 B 1 
HETATM 12 C C1B NDP . . . D 2 21.056 18.456 39.845 1 19.88 ? C1B NDP 901 B 1 
HETATM 13 N N9A NDP . . . D 2 20.352 17.33 40.449 1 24.22 ? N9A NDP 901 B 1 
HETATM 14 C C8A NDP . . . D 2 19.127 17.171 39.892 1 24.32 ? C8A NDP 901 B 1 
HETATM 15 N N7A NDP . . . D 2 18.393 16.185 40.439 1 21.8 ? N7A NDP 901 B 1 
HETATM 16 C C5A NDP . . . D 2 19.245 15.729 41.357 1 26.03 ? C5A NDP 901 B 1 
HETATM 17 C C6A NDP . . . D 2 19.012 14.697 42.21 1 27.9 ? C6A NDP 901 B 1 
HETATM 18 N N6A NDP . . . D 2 17.885 13.987 42.185 1 29.06 ? N6A NDP 901 B 1 
HETATM 19 N N1A NDP . . . D 2 19.949 14.366 43.126 1 30.25 ? N1A NDP 901 B 1 
HETATM 20 C C2A NDP . . . D 2 21.102 15.075 43.063 1 29.72 ? C2A NDP 901 B 1 
HETATM 21 N N3A NDP . . . D 2 21.38 16.094 42.223 1 27.83 ? N3A NDP 901 B 1 
HETATM 22 C C4A NDP . . . D 2 20.394 16.393 41.372 1 24.77 ? C4A NDP 901 B 1 
HETATM 23 O O3 NDP . . . D 2 16.398 22.634 39.512 1 15.94 ? O3 NDP 901 B 1 
HETATM 24 P PN NDP . . . D 2 15.434 23.111 38.34 1 18.28 ? PN NDP 901 B 1 
HETATM 25 O O1N NDP . . . D 2 14.064 22.929 38.783 1 19.01 ? O1N NDP 901 B 1 
HETATM 26 O O2N NDP . . . D 2 15.866 22.457 37.09 1 16.74 ? O2N NDP 901 B 1 
HETATM 27 O O5D NDP . . . D 2 15.781 24.629 38.35 1 21.09 ? O5D NDP 901 B 1 
HETATM 28 C C5D NDP . . . D 2 16.925 25 37.5 1 13.04 ? C5D NDP 901 B 1 
HETATM 29 C C4D NDP . . . D 2 17.258 26.449 37.318 1 16.71 ? C4D NDP 901 B 1 
HETATM 30 O O4D NDP . . . D 2 16.461 27.029 36.287 1 17 ? O4D NDP 901 B 1 
HETATM 31 C C3D NDP . . . D 2 17.069 27.346 38.542 1 14.31 ? C3D NDP 901 B 1 
HETATM 32 O O3D NDP . . . D 2 18.265 27.56 39.23 1 16.64 ? O3D NDP 901 B 1 
HETATM 33 C C2D NDP . . . D 2 16.503 28.667 37.979 1 15 ? C2D NDP 901 B 1 
HETATM 34 O O2D NDP . . . D 2 17.349 29.73 38.232 1 15.87 ? O2D NDP 901 B 1 
HETATM 35 C C1D NDP . . . D 2 16.397 28.447 36.471 1 16.3 ? C1D NDP 901 B 1 
HETATM 36 N N1N NDP . . . D 2 15.128 28.947 35.896 1 17.31 ? N1N NDP 901 B 1 
HETATM 37 C C2N NDP . . . D 2 15.113 30.128 35.236 1 14.62 ? C2N NDP 901 B 1 
HETATM 38 C C3N NDP . . . D 2 14.013 30.726 34.72 1 16.43 ? C3N NDP 901 B 1 
HETATM 39 C C7N NDP . . . D 2 14.005 31.927 34.048 1 15.89 ? C7N NDP 901 B 1 
HETATM 40 O O7N NDP . . . D 2 12.766 32.468 33.588 1 13.32 ? O7N NDP 901 B 1 
HETATM 41 N N7N NDP . . . D 2 15.18 32.499 33.875 1 13.12 ? N7N NDP 901 B 1 
HETATM 42 C C4N NDP . . . D 2 12.88 30.004 34.934 1 14.53 ? C4N NDP 901 B 1 
HETATM 43 C C5N NDP . . . D 2 12.796 28.786 35.593 1 12.48 ? C5N NDP 901 B 1 
HETATM 44 C C6N NDP . . . D 2 13.988 28.24 36.09 1 14.43 ? C6N NDP 901 B 1 
HETATM 45 P P2B NDP . . . D 2 23.257 16.953 37.616 1 20.4 ? P2B NDP 901 B 1 
HETATM 46 O O1X NDP . . . D 2 23.318 16.3 38.926 1 20 ? O1X NDP 901 B 1 
HETATM 47 O O2X NDP . . . D 2 22.405 16.222 36.681 1 18.12 ? O2X NDP 901 B 1 
HETATM 48 O O3X NDP . . . D 2 24.587 17.263 37.083 1 20.13 ? O3X NDP 901 B 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           48 
#