data_1F06
#
_model_server_result.job_id            jftssM4j3L58XsHriLb9LA 
_model_server_result.datetime_utc      '2024-12-04 14:59:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1f06 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":950}' 
#
_entry.id    1F06 
#
_exptl.entry_id    1F06 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              187.193 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'L-2-AMINO-6-METHYLENE-PIMELIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.52 
_cell.angle_gamma         90 
_cell.entry_id            1F06 
_cell.length_a            75.547 
_cell.length_b            65.591 
_cell.length_c            84.281 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1F06 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA,PQS dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,F 1 1 
B,D,E,G 2 1 
A,B,C,D,E,F,G 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C8 H13 N O4' 
_chem_comp.formula_weight    187.193 
_chem_comp.id                2NP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'L-2-AMINO-6-METHYLENE-PIMELIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O11 2NP doub 1 n n 
C1 O12 2NP sing 2 n n 
C1 C2 2NP sing 3 n n 
O12 H12 2NP sing 4 n n 
C2 N2 2NP sing 5 n n 
C2 C3 2NP sing 6 n n 
C2 H21 2NP sing 7 n n 
N2 HN21 2NP sing 8 n n 
N2 HN22 2NP sing 9 n n 
C3 C4 2NP sing 10 n n 
C3 H31 2NP sing 11 n n 
C3 H32 2NP sing 12 n n 
C4 C5 2NP sing 13 n n 
C4 H41 2NP sing 14 n n 
C4 H42 2NP sing 15 n n 
C5 C6 2NP sing 16 n n 
C5 H51 2NP sing 17 n n 
C5 H52 2NP sing 18 n n 
C6 C8 2NP doub 19 n n 
C6 C7 2NP sing 20 n n 
C8 H81 2NP sing 21 n n 
C8 H82 2NP sing 22 n n 
C7 O71 2NP doub 23 n n 
C7 O72 2NP sing 24 n n 
O72 H72 2NP sing 25 n n 
#
_atom_sites.entry_id                     1F06 
_atom_sites.fract_transf_matrix[1][1]    0.013237 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003926 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015246 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012376 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NDP A 1 401 401 NDP NDP . 
D 2 NDP B 1 901 901 NDP NDP . 
E 3 2NP B 1 950 950 2NP ASI . 
F 4 HOH A 1 1001 1001 HOH TIP . 
F 4 HOH A 2 1007 1007 HOH TIP . 
F 4 HOH A 3 1008 1008 HOH TIP . 
F 4 HOH A 4 1017 1017 HOH TIP . 
F 4 HOH A 5 1019 1019 HOH TIP . 
F 4 HOH A 6 1020 1020 HOH TIP . 
F 4 HOH A 7 1022 1022 HOH TIP . 
F 4 HOH A 8 1025 1025 HOH TIP . 
F 4 HOH A 9 1030 1030 HOH TIP . 
F 4 HOH A 10 1039 1039 HOH TIP . 
F 4 HOH A 11 1040 1040 HOH TIP . 
F 4 HOH A 12 1042 1042 HOH TIP . 
F 4 HOH A 13 1047 1047 HOH TIP . 
F 4 HOH A 14 1050 1050 HOH TIP . 
F 4 HOH A 15 1053 1053 HOH TIP . 
F 4 HOH A 16 1054 1054 HOH TIP . 
F 4 HOH A 17 1056 1056 HOH TIP . 
F 4 HOH A 18 1058 1058 HOH TIP . 
F 4 HOH A 19 1063 1063 HOH TIP . 
F 4 HOH A 20 1065 1065 HOH TIP . 
F 4 HOH A 21 1066 1066 HOH TIP . 
F 4 HOH A 22 1068 1068 HOH TIP . 
F 4 HOH A 23 1074 1074 HOH TIP . 
F 4 HOH A 24 1076 1076 HOH TIP . 
F 4 HOH A 25 1077 1077 HOH TIP . 
F 4 HOH A 26 1078 1078 HOH TIP . 
F 4 HOH A 27 1080 1080 HOH TIP . 
F 4 HOH A 28 1081 1081 HOH TIP . 
F 4 HOH A 29 1088 1088 HOH TIP . 
F 4 HOH A 30 1092 1092 HOH TIP . 
F 4 HOH A 31 1096 1096 HOH TIP . 
F 4 HOH A 32 1098 1098 HOH TIP . 
F 4 HOH A 33 1099 1099 HOH TIP . 
F 4 HOH A 34 1102 1102 HOH TIP . 
F 4 HOH A 35 1108 1108 HOH TIP . 
F 4 HOH A 36 1112 1112 HOH TIP . 
F 4 HOH A 37 1118 1118 HOH TIP . 
F 4 HOH A 38 1121 1121 HOH TIP . 
F 4 HOH A 39 1131 1131 HOH TIP . 
F 4 HOH A 40 1135 1135 HOH TIP . 
F 4 HOH A 41 1136 1136 HOH TIP . 
F 4 HOH A 42 1137 1137 HOH TIP . 
F 4 HOH A 43 1141 1141 HOH TIP . 
F 4 HOH A 44 1145 1145 HOH TIP . 
F 4 HOH A 45 1146 1146 HOH TIP . 
F 4 HOH A 46 1148 1148 HOH TIP . 
F 4 HOH A 47 1152 1152 HOH TIP . 
F 4 HOH A 48 1153 1153 HOH TIP . 
F 4 HOH A 49 1159 1159 HOH TIP . 
F 4 HOH A 50 1160 1160 HOH TIP . 
F 4 HOH A 51 1161 1161 HOH TIP . 
F 4 HOH A 52 1168 1168 HOH TIP . 
F 4 HOH A 53 1176 1176 HOH TIP . 
F 4 HOH A 54 1180 1180 HOH TIP . 
G 4 HOH B 1 1002 1002 HOH TIP . 
G 4 HOH B 2 1005 1005 HOH TIP . 
G 4 HOH B 3 1010 1010 HOH TIP . 
G 4 HOH B 4 1012 1012 HOH TIP . 
G 4 HOH B 5 1015 1015 HOH TIP . 
G 4 HOH B 6 1018 1018 HOH TIP . 
G 4 HOH B 7 1021 1021 HOH TIP . 
G 4 HOH B 8 1029 1029 HOH TIP . 
G 4 HOH B 9 1033 1033 HOH TIP . 
G 4 HOH B 10 1034 1034 HOH TIP . 
G 4 HOH B 11 1036 1036 HOH TIP . 
G 4 HOH B 12 1037 1037 HOH TIP . 
G 4 HOH B 13 1038 1038 HOH TIP . 
G 4 HOH B 14 1041 1041 HOH TIP . 
G 4 HOH B 15 1048 1048 HOH TIP . 
G 4 HOH B 16 1049 1049 HOH TIP . 
G 4 HOH B 17 1051 1051 HOH TIP . 
G 4 HOH B 18 1052 1052 HOH TIP . 
G 4 HOH B 19 1055 1055 HOH TIP . 
G 4 HOH B 20 1067 1067 HOH TIP . 
G 4 HOH B 21 1070 1070 HOH TIP . 
G 4 HOH B 22 1073 1073 HOH TIP . 
G 4 HOH B 23 1082 1082 HOH TIP . 
G 4 HOH B 24 1083 1083 HOH TIP . 
G 4 HOH B 25 1089 1089 HOH TIP . 
G 4 HOH B 26 1093 1093 HOH TIP . 
G 4 HOH B 27 1101 1101 HOH TIP . 
G 4 HOH B 28 1105 1105 HOH TIP . 
G 4 HOH B 29 1117 1117 HOH TIP . 
G 4 HOH B 30 1124 1124 HOH TIP . 
G 4 HOH B 31 1125 1125 HOH TIP . 
G 4 HOH B 32 1132 1132 HOH TIP . 
G 4 HOH B 33 1133 1133 HOH TIP . 
G 4 HOH B 34 1134 1134 HOH TIP . 
G 4 HOH B 35 1138 1138 HOH TIP . 
G 4 HOH B 36 1139 1139 HOH TIP . 
G 4 HOH B 37 1140 1140 HOH TIP . 
G 4 HOH B 38 1142 1142 HOH TIP . 
G 4 HOH B 39 1143 1143 HOH TIP . 
G 4 HOH B 40 1144 1144 HOH TIP . 
G 4 HOH B 41 1147 1147 HOH TIP . 
G 4 HOH B 42 1149 1149 HOH TIP . 
G 4 HOH B 43 1150 1150 HOH TIP . 
G 4 HOH B 44 1151 1151 HOH TIP . 
G 4 HOH B 45 1154 1154 HOH TIP . 
G 4 HOH B 46 1156 1156 HOH TIP . 
G 4 HOH B 47 1157 1157 HOH TIP . 
G 4 HOH B 48 1158 1158 HOH TIP . 
G 4 HOH B 49 1162 1162 HOH TIP . 
G 4 HOH B 50 1163 1163 HOH TIP . 
G 4 HOH B 51 1165 1165 HOH TIP . 
G 4 HOH B 52 1166 1166 HOH TIP . 
G 4 HOH B 53 1167 1167 HOH TIP . 
G 4 HOH B 54 1169 1169 HOH TIP . 
G 4 HOH B 55 1170 1170 HOH TIP . 
G 4 HOH B 56 1171 1171 HOH TIP . 
G 4 HOH B 57 1173 1173 HOH TIP . 
G 4 HOH B 58 1174 1174 HOH TIP . 
G 4 HOH B 59 1175 1175 HOH TIP . 
G 4 HOH B 60 1177 1177 HOH TIP . 
G 4 HOH B 61 1178 1178 HOH TIP . 
G 4 HOH B 62 1179 1179 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 2NP . . . E 3 9.833 34.519 41.254 1 22.55 ? C1 2NP 950 B 1 
HETATM 2 O O11 2NP . . . E 3 8.73 33.824 41.295 1 20.89 ? O11 2NP 950 B 1 
HETATM 3 O O12 2NP . . . E 3 10.583 34.622 42.312 1 20.32 ? O12 2NP 950 B 1 
HETATM 4 C C2 2NP . . . E 3 10.245 35.217 39.987 1 24.23 ? C2 2NP 950 B 1 
HETATM 5 N N2 2NP . . . E 3 11.026 36.379 40.401 1 29.97 ? N2 2NP 950 B 1 
HETATM 6 C C3 2NP . . . E 3 11.134 34.316 39.164 1 24 ? C3 2NP 950 B 1 
HETATM 7 C C4 2NP . . . E 3 10.337 33.18 38.597 1 18.04 ? C4 2NP 950 B 1 
HETATM 8 C C5 2NP . . . E 3 11.036 32.689 37.349 1 15.61 ? C5 2NP 950 B 1 
HETATM 9 C C6 2NP . . . E 3 12.302 31.983 37.751 1 17.95 ? C6 2NP 950 B 1 
HETATM 10 C C8 2NP . . . E 3 13.479 32.582 37.56 1 14.87 ? C8 2NP 950 B 1 
HETATM 11 C C7 2NP . . . E 3 12.237 30.591 38.369 1 15.96 ? C7 2NP 950 B 1 
HETATM 12 O O71 2NP . . . E 3 13.262 30.034 38.753 1 17.21 ? O71 2NP 950 B 1 
HETATM 13 O O72 2NP . . . E 3 11.101 29.988 38.5 1 14.53 ? O72 2NP 950 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    36 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           13 
#