data_1F0S # _model_server_result.job_id W4cYaAg4IBQOw1w-rSpdlQ _model_server_result.datetime_utc '2024-11-22 13:22:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1f0s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 1F0S # _exptl.entry_id 1F0S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.5 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'THIENO[3,2-B]PYRIDINE-2-SULFONIC ACID [2-OXO-1-(1H-PYRROLO[2,3-C]PYRIDIN-2-YLMETHYL)-PYRROLIDIN-3-YL]-AMIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1F0S _cell.length_a 55.66 _cell.length_b 71.58 _cell.length_c 78.7 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1F0S _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 12 A CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf2 A SG CYS 27 A CYS 42 1_555 A SG CYS 43 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 108 A CYS 122 1_555 B SG CYS 127 B CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 156 A CYS 168 1_555 A SG CYS 170 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf5 A SG CYS 181 A CYS 191 1_555 A SG CYS 209 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 B SG CYS 84 B CYS 1 1_555 B SG CYS 95 B CYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 B SG CYS 91 B CYS 8 1_555 B SG CYS 104 B CYS 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf8 B SG CYS 106 B CYS 23 1_555 B SG CYS 119 B CYS 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc1 A OD1 ASP 56 A ASP 70 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc2 A O ASN 58 A ASN 72 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc3 A O GLN 61 A GLN 75 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? metalc ? metalc4 A OE1 GLU 66 A GLU 80 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc5 C CA CA . A CA 301 1_555 E O HOH . A HOH 468 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc6 C CA CA . A CA 301 1_555 E O HOH . A HOH 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? # _chem_comp.formula 'C19 H17 N5 O3 S2' _chem_comp.formula_weight 427.5 _chem_comp.id PR2 _chem_comp.mon_nstd_flag . _chem_comp.name 'THIENO[3,2-B]PYRIDINE-2-SULFONIC ACID [2-OXO-1-(1H-PYRROLO[2,3-C]PYRIDIN-2-YLMETHYL)-PYRROLIDIN-3-YL]-AMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms RPR208707 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C17 PR2 sing 260 n y C16 C21 PR2 doub 261 n y C16 S27 PR2 sing 262 n y C17 C18 PR2 doub 263 n y C17 H171 PR2 sing 264 n n C18 C19 PR2 sing 265 n y C18 H181 PR2 sing 266 n n C19 N20 PR2 doub 267 n y C19 H191 PR2 sing 268 n n N20 C21 PR2 sing 269 n y C21 C25 PR2 sing 270 n y C25 C26 PR2 doub 271 n y C25 H251 PR2 sing 272 n n C26 S27 PR2 sing 273 n y C26 S38 PR2 sing 274 n n N28 C29 PR2 sing 275 n n N28 C32 PR2 sing 276 n n N28 C1 PR2 sing 277 n n C29 C30 PR2 sing 278 n n C29 O41 PR2 doub 279 n n C30 C31 PR2 sing 280 n n C30 N37 PR2 sing 281 n n C30 H301 PR2 sing 282 n n C31 C32 PR2 sing 283 n n C31 H311 PR2 sing 284 n n C31 H312 PR2 sing 285 n n C32 H321 PR2 sing 286 n n C32 H322 PR2 sing 287 n n N37 S38 PR2 sing 288 n n N37 H371 PR2 sing 289 n n S38 O39 PR2 doub 290 n n S38 O40 PR2 doub 291 n n C1 C28 PR2 sing 292 n n C1 H11 PR2 sing 293 n n C1 H12 PR2 sing 294 n n C5 C2 PR2 doub 295 n y C5 C6 PR2 sing 296 n y C5 N29 PR2 sing 297 n y C2 C3 PR2 sing 298 n y C2 C27 PR2 sing 299 n y C3 C4 PR2 doub 300 n y C3 H31 PR2 sing 301 n n C4 N5 PR2 sing 302 n y C4 H41 PR2 sing 303 n n N5 C6 PR2 doub 304 n y C6 H61 PR2 sing 305 n n C27 C28 PR2 doub 306 n y C27 H271 PR2 sing 307 n n C28 N29 PR2 sing 308 n y N29 H29 PR2 sing 309 n n # _atom_sites.entry_id 1F0S _atom_sites.fract_transf_matrix[1][1] 0.017966 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01397 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012706 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 301 1 CA CA . D 4 PR2 A 1 401 1 PR2 RPR . E 5 HOH A 1 402 1 HOH HOH . E 5 HOH A 2 403 2 HOH HOH . E 5 HOH A 3 404 3 HOH HOH . E 5 HOH A 4 405 4 HOH HOH . E 5 HOH A 5 406 5 HOH HOH . E 5 HOH A 6 407 6 HOH HOH . E 5 HOH A 7 408 7 HOH HOH . E 5 HOH A 8 409 8 HOH HOH . E 5 HOH A 9 410 9 HOH HOH . E 5 HOH A 10 411 10 HOH HOH . E 5 HOH A 11 412 11 HOH HOH . E 5 HOH A 12 413 12 HOH HOH . E 5 HOH A 13 414 13 HOH HOH . E 5 HOH A 14 415 14 HOH HOH . E 5 HOH A 15 416 15 HOH HOH . E 5 HOH A 16 417 16 HOH HOH . E 5 HOH A 17 418 17 HOH HOH . E 5 HOH A 18 419 18 HOH HOH . E 5 HOH A 19 420 19 HOH HOH . E 5 HOH A 20 421 21 HOH HOH . E 5 HOH A 21 422 22 HOH HOH . E 5 HOH A 22 423 24 HOH HOH . E 5 HOH A 23 424 25 HOH HOH . E 5 HOH A 24 425 26 HOH HOH . E 5 HOH A 25 426 27 HOH HOH . E 5 HOH A 26 427 28 HOH HOH . E 5 HOH A 27 428 29 HOH HOH . E 5 HOH A 28 429 30 HOH HOH . E 5 HOH A 29 430 31 HOH HOH . E 5 HOH A 30 431 32 HOH HOH . E 5 HOH A 31 432 33 HOH HOH . E 5 HOH A 32 433 34 HOH HOH . E 5 HOH A 33 434 36 HOH HOH . E 5 HOH A 34 435 38 HOH HOH . E 5 HOH A 35 436 39 HOH HOH . E 5 HOH A 36 437 40 HOH HOH . E 5 HOH A 37 438 41 HOH HOH . E 5 HOH A 38 439 42 HOH HOH . E 5 HOH A 39 440 44 HOH HOH . E 5 HOH A 40 441 46 HOH HOH . E 5 HOH A 41 442 47 HOH HOH . E 5 HOH A 42 443 48 HOH HOH . E 5 HOH A 43 444 49 HOH HOH . E 5 HOH A 44 445 50 HOH HOH . E 5 HOH A 45 446 51 HOH HOH . E 5 HOH A 46 447 52 HOH HOH . E 5 HOH A 47 448 54 HOH HOH . E 5 HOH A 48 449 55 HOH HOH . E 5 HOH A 49 450 57 HOH HOH . E 5 HOH A 50 451 58 HOH HOH . E 5 HOH A 51 452 59 HOH HOH . E 5 HOH A 52 453 60 HOH HOH . E 5 HOH A 53 454 61 HOH HOH . E 5 HOH A 54 455 62 HOH HOH . E 5 HOH A 55 456 64 HOH HOH . E 5 HOH A 56 457 65 HOH HOH . E 5 HOH A 57 458 67 HOH HOH . E 5 HOH A 58 459 68 HOH HOH . E 5 HOH A 59 460 69 HOH HOH . E 5 HOH A 60 461 70 HOH HOH . E 5 HOH A 61 462 72 HOH HOH . E 5 HOH A 62 463 73 HOH HOH . E 5 HOH A 63 464 74 HOH HOH . E 5 HOH A 64 465 75 HOH HOH . E 5 HOH A 65 466 76 HOH HOH . E 5 HOH A 66 467 77 HOH HOH . E 5 HOH A 67 468 80 HOH HOH . E 5 HOH A 68 469 81 HOH HOH . E 5 HOH A 69 470 82 HOH HOH . E 5 HOH A 70 471 84 HOH HOH . E 5 HOH A 71 472 85 HOH HOH . E 5 HOH A 72 473 86 HOH HOH . E 5 HOH A 73 474 87 HOH HOH . E 5 HOH A 74 475 89 HOH HOH . E 5 HOH A 75 476 90 HOH HOH . E 5 HOH A 76 477 92 HOH HOH . E 5 HOH A 77 478 93 HOH HOH . E 5 HOH A 78 479 94 HOH HOH . E 5 HOH A 79 480 95 HOH HOH . E 5 HOH A 80 481 97 HOH HOH . E 5 HOH A 81 482 98 HOH HOH . E 5 HOH A 82 483 101 HOH HOH . E 5 HOH A 83 484 102 HOH HOH . E 5 HOH A 84 485 103 HOH HOH . E 5 HOH A 85 486 105 HOH HOH . E 5 HOH A 86 487 109 HOH HOH . E 5 HOH A 87 488 110 HOH HOH . E 5 HOH A 88 489 112 HOH HOH . E 5 HOH A 89 490 114 HOH HOH . E 5 HOH A 90 491 115 HOH HOH . E 5 HOH A 91 492 117 HOH HOH . E 5 HOH A 92 493 118 HOH HOH . E 5 HOH A 93 494 119 HOH HOH . E 5 HOH A 94 495 120 HOH HOH . E 5 HOH A 95 496 124 HOH HOH . E 5 HOH A 96 497 125 HOH HOH . E 5 HOH A 97 498 126 HOH HOH . E 5 HOH A 98 499 127 HOH HOH . E 5 HOH A 99 500 129 HOH HOH . E 5 HOH A 100 501 135 HOH HOH . E 5 HOH A 101 502 136 HOH HOH . E 5 HOH A 102 503 137 HOH HOH . E 5 HOH A 103 504 138 HOH HOH . E 5 HOH A 104 505 140 HOH HOH . E 5 HOH A 105 506 141 HOH HOH . E 5 HOH A 106 507 142 HOH HOH . E 5 HOH A 107 508 143 HOH HOH . E 5 HOH A 108 509 144 HOH HOH . E 5 HOH A 109 510 147 HOH HOH . F 5 HOH B 1 52 20 HOH HOH . F 5 HOH B 2 53 23 HOH HOH . F 5 HOH B 3 54 35 HOH HOH . F 5 HOH B 4 55 37 HOH HOH . F 5 HOH B 5 56 43 HOH HOH . F 5 HOH B 6 57 45 HOH HOH . F 5 HOH B 7 58 53 HOH HOH . F 5 HOH B 8 59 56 HOH HOH . F 5 HOH B 9 60 63 HOH HOH . F 5 HOH B 10 61 66 HOH HOH . F 5 HOH B 11 62 71 HOH HOH . F 5 HOH B 12 63 78 HOH HOH . F 5 HOH B 13 64 79 HOH HOH . F 5 HOH B 14 65 83 HOH HOH . F 5 HOH B 15 66 88 HOH HOH . F 5 HOH B 16 67 91 HOH HOH . F 5 HOH B 17 68 96 HOH HOH . F 5 HOH B 18 69 99 HOH HOH . F 5 HOH B 19 70 100 HOH HOH . F 5 HOH B 20 71 104 HOH HOH . F 5 HOH B 21 72 106 HOH HOH . F 5 HOH B 22 73 107 HOH HOH . F 5 HOH B 23 74 108 HOH HOH . F 5 HOH B 24 75 111 HOH HOH . F 5 HOH B 25 76 113 HOH HOH . F 5 HOH B 26 77 116 HOH HOH . F 5 HOH B 27 78 121 HOH HOH . F 5 HOH B 28 79 122 HOH HOH . F 5 HOH B 29 80 123 HOH HOH . F 5 HOH B 30 81 128 HOH HOH . F 5 HOH B 31 82 130 HOH HOH . F 5 HOH B 32 83 131 HOH HOH . F 5 HOH B 33 84 132 HOH HOH . F 5 HOH B 34 85 133 HOH HOH . F 5 HOH B 35 86 134 HOH HOH . F 5 HOH B 36 87 139 HOH HOH . F 5 HOH B 37 88 145 HOH HOH . F 5 HOH B 38 89 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C16 PR2 . . . D 4 7.606 1.094 19.354 0.9 33.91 ? C16 PR2 401 A 1 HETATM 2 C C17 PR2 . . . D 4 8.938 0.856 18.918 0.9 36.63 ? C17 PR2 401 A 1 HETATM 3 C C18 PR2 . . . D 4 9.156 0.332 17.601 0.9 36.87 ? C18 PR2 401 A 1 HETATM 4 C C19 PR2 . . . D 4 8.009 0.076 16.781 0.9 40.51 ? C19 PR2 401 A 1 HETATM 5 N N20 PR2 . . . D 4 6.731 0.314 17.228 0.9 38.49 ? N20 PR2 401 A 1 HETATM 6 C C21 PR2 . . . D 4 6.523 0.821 18.514 0.9 35.47 ? C21 PR2 401 A 1 HETATM 7 C C25 PR2 . . . D 4 5.224 1.083 19.041 0.9 36.7 ? C25 PR2 401 A 1 HETATM 8 C C26 PR2 . . . D 4 5.417 1.585 20.358 0.9 39.91 ? C26 PR2 401 A 1 HETATM 9 S S27 PR2 . . . D 4 7.06 1.695 20.824 0.9 42.49 ? S27 PR2 401 A 1 HETATM 10 N N28 PR2 . . . D 4 5.436 6.689 22.361 0.9 35.62 ? N28 PR2 401 A 1 HETATM 11 C C29 PR2 . . . D 4 4.853 5.524 22.729 0.9 32.75 ? C29 PR2 401 A 1 HETATM 12 C C30 PR2 . . . D 4 5.198 4.504 21.67 0.9 34.61 ? C30 PR2 401 A 1 HETATM 13 C C31 PR2 . . . D 4 5.691 5.329 20.478 0.9 34.81 ? C31 PR2 401 A 1 HETATM 14 C C32 PR2 . . . D 4 6.176 6.613 21.104 0.9 35.69 ? C32 PR2 401 A 1 HETATM 15 N N37 PR2 . . . D 4 4.038 3.731 21.246 0.9 42.14 ? N37 PR2 401 A 1 HETATM 16 S S38 PR2 . . . D 4 4.094 2.1 21.329 0.9 47.33 ? S38 PR2 401 A 1 HETATM 17 O O39 PR2 . . . D 4 2.817 1.798 20.762 0.9 49.57 ? O39 PR2 401 A 1 HETATM 18 O O40 PR2 . . . D 4 4.366 1.809 22.71 0.9 38.8 ? O40 PR2 401 A 1 HETATM 19 O O41 PR2 . . . D 4 4.184 5.326 23.737 0.9 36.99 ? O41 PR2 401 A 1 HETATM 20 C C1 PR2 . . . D 4 5.397 7.956 23.094 0.9 32.59 ? C1 PR2 401 A 1 HETATM 21 C C5 PR2 . . . D 4 8.287 7.737 25.313 0.9 28.1 ? C5 PR2 401 A 1 HETATM 22 C C2 PR2 . . . D 4 8.834 8.658 24.327 0.9 28.79 ? C2 PR2 401 A 1 HETATM 23 C C3 PR2 . . . D 4 10.164 9.155 24.465 0.9 25.94 ? C3 PR2 401 A 1 HETATM 24 C C4 PR2 . . . D 4 10.916 8.711 25.594 0.9 27.16 ? C4 PR2 401 A 1 HETATM 25 N N5 PR2 . . . D 4 10.361 7.844 26.498 0.9 24.79 ? N5 PR2 401 A 1 HETATM 26 C C6 PR2 . . . D 4 9.103 7.343 26.415 0.9 24.16 ? C6 PR2 401 A 1 HETATM 27 C C27 PR2 . . . D 4 7.836 8.877 23.364 0.9 25.94 ? C27 PR2 401 A 1 HETATM 28 C C28 PR2 . . . D 4 6.739 8.099 23.783 0.9 26.07 ? C28 PR2 401 A 1 HETATM 29 N N29 PR2 . . . D 4 7.001 7.433 24.923 0.9 30.23 ? N29 PR2 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 29 #