data_1F0T # _model_server_result.job_id 6ORob-T-fZ0GCB5txCZaaw _model_server_result.datetime_utc '2024-11-05 12:28:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1f0t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 1F0T # _exptl.entry_id 1F0T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 445.515 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-HYDROXY-3-[2-OXO-3-(THIENO[3,2-B]PYRIDINE-2-SULFONYLAMINO)-PYRROLIDIN-1-YLMETHYL]-BENZAMIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1F0T _cell.length_a 63.44 _cell.length_b 63.83 _cell.length_c 69.36 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1F0T _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 27 A CYS 22 1_555 A SG CYS 157 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 45 A CYS 42 1_555 A SG CYS 61 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 129 A CYS 128 1_555 A SG CYS 230 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 A SG CYS 136 A CYS 136 1_555 A SG CYS 203 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 A SG CYS 168 A CYS 168 1_555 A SG CYS 182 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf6 A SG CYS 193 A CYS 191 1_555 A SG CYS 217 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 A OE1 GLU 72 A GLU 70 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc2 A O ASN 74 A ASN 72 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc3 A O VAL 77 A VAL 75 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc4 A OE2 GLU 82 A GLU 80 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc5 B CA CA . A CA 301 1_555 F O HOH . A HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc6 B CA CA . A CA 301 1_555 F O HOH . A HOH 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? # _chem_comp.formula 'C19 H19 N5 O4 S2' _chem_comp.formula_weight 445.515 _chem_comp.id PR1 _chem_comp.mon_nstd_flag . _chem_comp.name 4-HYDROXY-3-[2-OXO-3-(THIENO[3,2-B]PYRIDINE-2-SULFONYLAMINO)-PYRROLIDIN-1-YLMETHYL]-BENZAMIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms RPR131247 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PR1 doub 260 n y C1 C6 PR1 sing 261 n y C1 H11 PR1 sing 262 n n C2 C3 PR1 sing 263 n y C2 H21 PR1 sing 264 n n C3 C4 PR1 doub 265 n y C3 O44 PR1 sing 266 n n C4 C5 PR1 sing 267 n y C4 C13 PR1 sing 268 n n C5 C6 PR1 doub 269 n y C5 H51 PR1 sing 270 n n C6 C10 PR1 sing 271 n n C10 N11 PR1 doub 272 n n C10 N12 PR1 sing 273 n n N11 H111 PR1 sing 274 n n N12 H121 PR1 sing 275 n n N12 H122 PR1 sing 276 n n C13 N28 PR1 sing 277 n n C13 H131 PR1 sing 278 n n C13 H132 PR1 sing 279 n n O44 H441 PR1 sing 280 n n C16 C17 PR1 sing 281 n y C16 C21 PR1 doub 282 n y C16 S27 PR1 sing 283 n y C17 C18 PR1 doub 284 n y C17 H171 PR1 sing 285 n n C18 C19 PR1 sing 286 n y C18 H181 PR1 sing 287 n n C19 N20 PR1 doub 288 n y C19 H191 PR1 sing 289 n n N20 C21 PR1 sing 290 n y C21 C25 PR1 sing 291 n y C25 C26 PR1 doub 292 n y C25 H251 PR1 sing 293 n n C26 S27 PR1 sing 294 n y C26 S38 PR1 sing 295 n n N28 C29 PR1 sing 296 n n N28 C32 PR1 sing 297 n n C29 C30 PR1 sing 298 n n C29 O41 PR1 doub 299 n n C30 C31 PR1 sing 300 n n C30 N37 PR1 sing 301 n n C30 H301 PR1 sing 302 n n C31 C32 PR1 sing 303 n n C31 H311 PR1 sing 304 n n C31 H312 PR1 sing 305 n n C32 H321 PR1 sing 306 n n C32 H322 PR1 sing 307 n n N37 S38 PR1 sing 308 n n N37 H371 PR1 sing 309 n n S38 O39 PR1 doub 310 n n S38 O40 PR1 doub 311 n n # _atom_sites.entry_id 1F0T _atom_sites.fract_transf_matrix[1][1] 0.015763 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015667 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014418 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 301 1 CA CA . C 3 SO4 A 1 302 2 SO4 SO4 . D 3 SO4 A 1 303 3 SO4 SO4 . E 4 PR1 A 1 304 1 PR1 RPR . F 5 HOH A 1 305 5 HOH HOH . F 5 HOH A 2 306 6 HOH HOH . F 5 HOH A 3 307 7 HOH HOH . F 5 HOH A 4 308 8 HOH HOH . F 5 HOH A 5 309 9 HOH HOH . F 5 HOH A 6 310 10 HOH HOH . F 5 HOH A 7 311 11 HOH HOH . F 5 HOH A 8 312 12 HOH HOH . F 5 HOH A 9 313 13 HOH HOH . F 5 HOH A 10 314 14 HOH HOH . F 5 HOH A 11 315 15 HOH HOH . F 5 HOH A 12 316 16 HOH HOH . F 5 HOH A 13 317 17 HOH HOH . F 5 HOH A 14 318 18 HOH HOH . F 5 HOH A 15 319 19 HOH HOH . F 5 HOH A 16 320 20 HOH HOH . F 5 HOH A 17 321 21 HOH HOH . F 5 HOH A 18 322 22 HOH HOH . F 5 HOH A 19 323 23 HOH HOH . F 5 HOH A 20 324 24 HOH HOH . F 5 HOH A 21 325 25 HOH HOH . F 5 HOH A 22 326 26 HOH HOH . F 5 HOH A 23 327 27 HOH HOH . F 5 HOH A 24 328 28 HOH HOH . F 5 HOH A 25 329 29 HOH HOH . F 5 HOH A 26 330 30 HOH HOH . F 5 HOH A 27 331 31 HOH HOH . F 5 HOH A 28 332 32 HOH HOH . F 5 HOH A 29 333 33 HOH HOH . F 5 HOH A 30 334 34 HOH HOH . F 5 HOH A 31 335 35 HOH HOH . F 5 HOH A 32 336 36 HOH HOH . F 5 HOH A 33 337 37 HOH HOH . F 5 HOH A 34 338 38 HOH HOH . F 5 HOH A 35 339 39 HOH HOH . F 5 HOH A 36 340 40 HOH HOH . F 5 HOH A 37 341 41 HOH HOH . F 5 HOH A 38 342 42 HOH HOH . F 5 HOH A 39 343 43 HOH HOH . F 5 HOH A 40 344 44 HOH HOH . F 5 HOH A 41 345 45 HOH HOH . F 5 HOH A 42 346 46 HOH HOH . F 5 HOH A 43 347 47 HOH HOH . F 5 HOH A 44 348 48 HOH HOH . F 5 HOH A 45 349 49 HOH HOH . F 5 HOH A 46 350 50 HOH HOH . F 5 HOH A 47 351 51 HOH HOH . F 5 HOH A 48 352 52 HOH HOH . F 5 HOH A 49 353 53 HOH HOH . F 5 HOH A 50 354 54 HOH HOH . F 5 HOH A 51 355 55 HOH HOH . F 5 HOH A 52 356 56 HOH HOH . F 5 HOH A 53 357 57 HOH HOH . F 5 HOH A 54 358 58 HOH HOH . F 5 HOH A 55 359 59 HOH HOH . F 5 HOH A 56 360 60 HOH HOH . F 5 HOH A 57 361 61 HOH HOH . F 5 HOH A 58 362 62 HOH HOH . F 5 HOH A 59 363 63 HOH HOH . F 5 HOH A 60 364 64 HOH HOH . F 5 HOH A 61 365 65 HOH HOH . F 5 HOH A 62 366 66 HOH HOH . F 5 HOH A 63 367 67 HOH HOH . F 5 HOH A 64 368 68 HOH HOH . F 5 HOH A 65 369 69 HOH HOH . F 5 HOH A 66 370 70 HOH HOH . F 5 HOH A 67 371 71 HOH HOH . F 5 HOH A 68 372 72 HOH HOH . F 5 HOH A 69 373 73 HOH HOH . F 5 HOH A 70 374 74 HOH HOH . F 5 HOH A 71 375 75 HOH HOH . F 5 HOH A 72 376 76 HOH HOH . F 5 HOH A 73 377 77 HOH HOH . F 5 HOH A 74 378 78 HOH HOH . F 5 HOH A 75 379 79 HOH HOH . F 5 HOH A 76 380 80 HOH HOH . F 5 HOH A 77 381 81 HOH HOH . F 5 HOH A 78 382 82 HOH HOH . F 5 HOH A 79 383 83 HOH HOH . F 5 HOH A 80 384 84 HOH HOH . F 5 HOH A 81 385 85 HOH HOH . F 5 HOH A 82 386 86 HOH HOH . F 5 HOH A 83 387 87 HOH HOH . F 5 HOH A 84 388 88 HOH HOH . F 5 HOH A 85 389 89 HOH HOH . F 5 HOH A 86 390 90 HOH HOH . F 5 HOH A 87 391 91 HOH HOH . F 5 HOH A 88 392 92 HOH HOH . F 5 HOH A 89 393 93 HOH HOH . F 5 HOH A 90 394 94 HOH HOH . F 5 HOH A 91 395 95 HOH HOH . F 5 HOH A 92 396 96 HOH HOH . F 5 HOH A 93 397 97 HOH HOH . F 5 HOH A 94 398 98 HOH HOH . F 5 HOH A 95 399 99 HOH HOH . F 5 HOH A 96 400 100 HOH HOH . F 5 HOH A 97 401 101 HOH HOH . F 5 HOH A 98 402 102 HOH HOH . F 5 HOH A 99 403 103 HOH HOH . F 5 HOH A 100 404 104 HOH HOH . F 5 HOH A 101 405 105 HOH HOH . F 5 HOH A 102 406 106 HOH HOH . F 5 HOH A 103 407 107 HOH HOH . F 5 HOH A 104 408 108 HOH HOH . F 5 HOH A 105 409 109 HOH HOH . F 5 HOH A 106 410 110 HOH HOH . F 5 HOH A 107 411 111 HOH HOH . F 5 HOH A 108 412 112 HOH HOH . F 5 HOH A 109 413 113 HOH HOH . F 5 HOH A 110 414 114 HOH HOH . F 5 HOH A 111 415 115 HOH HOH . F 5 HOH A 112 416 116 HOH HOH . F 5 HOH A 113 417 117 HOH HOH . F 5 HOH A 114 418 118 HOH HOH . F 5 HOH A 115 419 119 HOH HOH . F 5 HOH A 116 420 120 HOH HOH . F 5 HOH A 117 421 121 HOH HOH . F 5 HOH A 118 422 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PR1 . . . E 4 13.772 -3.411 25.088 1 17.51 ? C1 PR1 304 A 1 HETATM 2 C C2 PR1 . . . E 4 14.156 -3.544 23.751 1 17.38 ? C2 PR1 304 A 1 HETATM 3 C C3 PR1 . . . E 4 13.3 -4.134 22.822 1 18.32 ? C3 PR1 304 A 1 HETATM 4 C C4 PR1 . . . E 4 12.044 -4.601 23.221 1 19.47 ? C4 PR1 304 A 1 HETATM 5 C C5 PR1 . . . E 4 11.67 -4.462 24.563 1 18.97 ? C5 PR1 304 A 1 HETATM 6 C C6 PR1 . . . E 4 12.51 -3.868 25.527 1 17.83 ? C6 PR1 304 A 1 HETATM 7 C C10 PR1 . . . E 4 12.042 -3.698 27.027 1 17.81 ? C10 PR1 304 A 1 HETATM 8 N N11 PR1 . . . E 4 10.764 -3.951 27.377 1 18.63 ? N11 PR1 304 A 1 HETATM 9 N N12 PR1 . . . E 4 12.909 -3.296 27.969 1 16.55 ? N12 PR1 304 A 1 HETATM 10 C C13 PR1 . . . E 4 11.048 -5.279 22.225 1 20.29 ? C13 PR1 304 A 1 HETATM 11 O O44 PR1 . . . E 4 13.683 -4.257 21.551 1 19.14 ? O44 PR1 304 A 1 HETATM 12 C C16 PR1 . . . E 4 12.872 -13.039 24.135 1 26.58 ? C16 PR1 304 A 1 HETATM 13 C C17 PR1 . . . E 4 13.897 -13.494 24.952 1 25.57 ? C17 PR1 304 A 1 HETATM 14 C C18 PR1 . . . E 4 15.064 -14.069 24.421 1 26.4 ? C18 PR1 304 A 1 HETATM 15 C C19 PR1 . . . E 4 15.243 -14.211 23.027 1 27.92 ? C19 PR1 304 A 1 HETATM 16 N N20 PR1 . . . E 4 14.289 -13.793 22.154 1 26.81 ? N20 PR1 304 A 1 HETATM 17 C C21 PR1 . . . E 4 13.065 -13.194 22.623 1 26.09 ? C21 PR1 304 A 1 HETATM 18 C C25 PR1 . . . E 4 11.969 -12.688 21.92 1 26.15 ? C25 PR1 304 A 1 HETATM 19 C C26 PR1 . . . E 4 10.967 -12.159 22.815 1 26.7 ? C26 PR1 304 A 1 HETATM 20 S S27 PR1 . . . E 4 11.372 -12.288 24.485 1 27.54 ? S27 PR1 304 A 1 HETATM 21 N N28 PR1 . . . E 4 11.09 -6.751 22.217 1 22.02 ? N28 PR1 304 A 1 HETATM 22 C C29 PR1 . . . E 4 10.001 -7.552 22.319 1 22.92 ? C29 PR1 304 A 1 HETATM 23 C C30 PR1 . . . E 4 10.484 -8.976 22.311 1 23.83 ? C30 PR1 304 A 1 HETATM 24 C C31 PR1 . . . E 4 11.778 -8.886 21.517 1 23.77 ? C31 PR1 304 A 1 HETATM 25 C C32 PR1 . . . E 4 12.314 -7.501 21.851 1 23.45 ? C32 PR1 304 A 1 HETATM 26 N N37 PR1 . . . E 4 9.895 -10.012 21.557 1 26.16 ? N37 PR1 304 A 1 HETATM 27 S S38 PR1 . . . E 4 9.48 -11.417 22.247 1 27.86 ? S38 PR1 304 A 1 HETATM 28 O O39 PR1 . . . E 4 8.68 -11.028 23.366 1 25.79 ? O39 PR1 304 A 1 HETATM 29 O O40 PR1 . . . E 4 8.938 -12.176 21.167 1 29.39 ? O40 PR1 304 A 1 HETATM 30 O O41 PR1 . . . E 4 8.843 -7.199 22.395 1 24.56 ? O41 PR1 304 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 30 #