data_1F0U # _model_server_result.job_id 3hwlpIELtsI-mHVEYwIfnQ _model_server_result.datetime_utc '2024-11-05 12:28:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1f0u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 1F0U # _exptl.entry_id 1F0U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 458.552 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3-[(3'-AMINOMETHYL-BIPHENYL-4-CARBONYL)-AMINO]-2-(3-CARBAMIMIDOYL-BENZYL)-BUTYRIC ACID METHYL ESTER" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1F0U _cell.length_a 63.73 _cell.length_b 63.89 _cell.length_c 69.17 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1F0U _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 27 A CYS 22 1_555 A SG CYS 157 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf2 A SG CYS 45 A CYS 42 1_555 A SG CYS 61 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf3 A SG CYS 129 A CYS 128 1_555 A SG CYS 230 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf4 A SG CYS 136 A CYS 136 1_555 A SG CYS 203 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf5 A SG CYS 168 A CYS 168 1_555 A SG CYS 182 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf6 A SG CYS 193 A CYS 191 1_555 A SG CYS 217 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc1 A OE1 GLU 72 A GLU 70 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc2 A O ASN 74 A ASN 72 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc3 A O VAL 77 A VAL 75 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc4 A OE2 GLU 82 A GLU 80 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc5 B CA CA . A CA 301 1_555 E O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc6 B CA CA . A CA 301 1_555 E O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? # _chem_comp.formula 'C27 H30 N4 O3' _chem_comp.formula_weight 458.552 _chem_comp.id RPR _chem_comp.mon_nstd_flag . _chem_comp.name "3-[(3'-AMINOMETHYL-BIPHENYL-4-CARBONYL)-AMINO]-2-(3-CARBAMIMIDOYL-BENZYL)-BUTYRIC ACID METHYL ESTER" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms RPR128515 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RPR doub 277 n y C1 C6 RPR sing 278 n y C1 H11 RPR sing 279 n n C2 C3 RPR sing 280 n y C2 C11 RPR sing 281 n y C3 C4 RPR doub 282 n y C3 H31 RPR sing 283 n n C4 C5 RPR sing 284 n y C4 H41 RPR sing 285 n n C5 C6 RPR doub 286 n y C5 H51 RPR sing 287 n n C6 C21 RPR sing 288 n n C7 C8 RPR doub 289 n y C7 C12 RPR sing 290 n y C7 H71 RPR sing 291 n n C8 C9 RPR sing 292 n y C8 C13 RPR sing 293 n n C9 C10 RPR doub 294 n y C9 H91 RPR sing 295 n n C10 C11 RPR sing 296 n y C10 H101 RPR sing 297 n n C11 C12 RPR doub 298 n y C12 H121 RPR sing 299 n n C13 N14 RPR sing 300 n n C13 O33 RPR doub 301 n n N14 C15 RPR sing 302 n n N14 H141 RPR sing 303 n n C15 C16 RPR sing 304 n n C15 C17 RPR sing 305 n n C15 H151 RPR sing 306 n n C16 H161 RPR sing 307 n n C16 H162 RPR sing 308 n n C16 H163 RPR sing 309 n n C17 C18 RPR sing 310 n n C17 C20 RPR sing 311 n n C17 H171 RPR sing 312 n n C18 O19 RPR sing 313 n n C18 O32 RPR doub 314 n n O19 C34 RPR sing 315 n n C20 C28 RPR sing 316 n n C20 H201 RPR sing 317 n n C20 H202 RPR sing 318 n n C21 N22 RPR sing 319 n n C21 H211 RPR sing 320 n n C21 H212 RPR sing 321 n n N22 H221 RPR sing 322 n n N22 H222 RPR sing 323 n n C23 C24 RPR doub 324 n y C23 C28 RPR sing 325 n y C23 H231 RPR sing 326 n n C24 C25 RPR sing 327 n y C24 C29 RPR sing 328 n n C25 C26 RPR doub 329 n y C25 H251 RPR sing 330 n n C26 C27 RPR sing 331 n y C26 H261 RPR sing 332 n n C27 C28 RPR doub 333 n y C27 H271 RPR sing 334 n n C29 N30 RPR sing 335 n n C29 N31 RPR doub 336 n n N30 H301 RPR sing 337 n n N30 H302 RPR sing 338 n n N31 H311 RPR sing 339 n n C34 H341 RPR sing 340 n n C34 H342 RPR sing 341 n n C34 H343 RPR sing 342 n n # _atom_sites.entry_id 1F0U _atom_sites.fract_transf_matrix[1][1] 0.015691 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015652 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014457 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 301 0 CA CA . C 3 SO4 A 1 401 1 SO4 SO4 . D 4 RPR A 1 501 1 RPR RPR . E 5 HOH A 1 502 1 HOH HOH . E 5 HOH A 2 503 2 HOH HOH . E 5 HOH A 3 504 3 HOH HOH . E 5 HOH A 4 505 4 HOH HOH . E 5 HOH A 5 506 5 HOH HOH . E 5 HOH A 6 507 6 HOH HOH . E 5 HOH A 7 508 7 HOH HOH . E 5 HOH A 8 509 8 HOH HOH . E 5 HOH A 9 510 9 HOH HOH . E 5 HOH A 10 511 10 HOH HOH . E 5 HOH A 11 512 11 HOH HOH . E 5 HOH A 12 513 12 HOH HOH . E 5 HOH A 13 514 13 HOH HOH . E 5 HOH A 14 515 14 HOH HOH . E 5 HOH A 15 516 15 HOH HOH . E 5 HOH A 16 517 16 HOH HOH . E 5 HOH A 17 518 17 HOH HOH . E 5 HOH A 18 519 18 HOH HOH . E 5 HOH A 19 520 19 HOH HOH . E 5 HOH A 20 521 21 HOH HOH . E 5 HOH A 21 522 22 HOH HOH . E 5 HOH A 22 523 23 HOH HOH . E 5 HOH A 23 524 24 HOH HOH . E 5 HOH A 24 525 25 HOH HOH . E 5 HOH A 25 526 26 HOH HOH . E 5 HOH A 26 527 27 HOH HOH . E 5 HOH A 27 528 28 HOH HOH . E 5 HOH A 28 529 29 HOH HOH . E 5 HOH A 29 530 30 HOH HOH . E 5 HOH A 30 531 31 HOH HOH . E 5 HOH A 31 532 32 HOH HOH . E 5 HOH A 32 533 33 HOH HOH . E 5 HOH A 33 534 34 HOH HOH . E 5 HOH A 34 535 35 HOH HOH . E 5 HOH A 35 536 36 HOH HOH . E 5 HOH A 36 537 38 HOH HOH . E 5 HOH A 37 538 39 HOH HOH . E 5 HOH A 38 539 40 HOH HOH . E 5 HOH A 39 540 41 HOH HOH . E 5 HOH A 40 541 42 HOH HOH . E 5 HOH A 41 542 43 HOH HOH . E 5 HOH A 42 543 44 HOH HOH . E 5 HOH A 43 544 45 HOH HOH . E 5 HOH A 44 545 46 HOH HOH . E 5 HOH A 45 546 47 HOH HOH . E 5 HOH A 46 547 48 HOH HOH . E 5 HOH A 47 548 49 HOH HOH . E 5 HOH A 48 549 50 HOH HOH . E 5 HOH A 49 550 51 HOH HOH . E 5 HOH A 50 551 52 HOH HOH . E 5 HOH A 51 552 53 HOH HOH . E 5 HOH A 52 553 54 HOH HOH . E 5 HOH A 53 554 55 HOH HOH . E 5 HOH A 54 555 56 HOH HOH . E 5 HOH A 55 556 57 HOH HOH . E 5 HOH A 56 557 58 HOH HOH . E 5 HOH A 57 558 59 HOH HOH . E 5 HOH A 58 559 60 HOH HOH . E 5 HOH A 59 560 61 HOH HOH . E 5 HOH A 60 561 62 HOH HOH . E 5 HOH A 61 562 63 HOH HOH . E 5 HOH A 62 563 64 HOH HOH . E 5 HOH A 63 564 65 HOH HOH . E 5 HOH A 64 565 67 HOH HOH . E 5 HOH A 65 566 68 HOH HOH . E 5 HOH A 66 567 69 HOH HOH . E 5 HOH A 67 568 70 HOH HOH . E 5 HOH A 68 569 71 HOH HOH . E 5 HOH A 69 570 72 HOH HOH . E 5 HOH A 70 571 73 HOH HOH . E 5 HOH A 71 572 74 HOH HOH . E 5 HOH A 72 573 75 HOH HOH . E 5 HOH A 73 574 76 HOH HOH . E 5 HOH A 74 575 78 HOH HOH . E 5 HOH A 75 576 80 HOH HOH . E 5 HOH A 76 577 81 HOH HOH . E 5 HOH A 77 578 83 HOH HOH . E 5 HOH A 78 579 84 HOH HOH . E 5 HOH A 79 580 85 HOH HOH . E 5 HOH A 80 581 88 HOH HOH . E 5 HOH A 81 582 90 HOH HOH . E 5 HOH A 82 583 91 HOH HOH . E 5 HOH A 83 584 92 HOH HOH . E 5 HOH A 84 585 93 HOH HOH . E 5 HOH A 85 586 94 HOH HOH . E 5 HOH A 86 587 95 HOH HOH . E 5 HOH A 87 588 96 HOH HOH . E 5 HOH A 88 589 97 HOH HOH . E 5 HOH A 89 590 98 HOH HOH . E 5 HOH A 90 591 99 HOH HOH . E 5 HOH A 91 592 100 HOH HOH . E 5 HOH A 92 593 101 HOH HOH . E 5 HOH A 93 594 102 HOH HOH . E 5 HOH A 94 595 103 HOH HOH . E 5 HOH A 95 596 104 HOH HOH . E 5 HOH A 96 597 105 HOH HOH . E 5 HOH A 97 598 106 HOH HOH . E 5 HOH A 98 599 107 HOH HOH . E 5 HOH A 99 600 108 HOH HOH . E 5 HOH A 100 601 109 HOH HOH . E 5 HOH A 101 602 111 HOH HOH . E 5 HOH A 102 603 112 HOH HOH . E 5 HOH A 103 604 113 HOH HOH . E 5 HOH A 104 605 114 HOH HOH . E 5 HOH A 105 606 117 HOH HOH . E 5 HOH A 106 607 119 HOH HOH . E 5 HOH A 107 608 120 HOH HOH . E 5 HOH A 108 609 121 HOH HOH . E 5 HOH A 109 610 502 HOH HOH . E 5 HOH A 110 611 122 HOH HOH . E 5 HOH A 111 612 123 HOH HOH . E 5 HOH A 112 613 124 HOH HOH . E 5 HOH A 113 614 125 HOH HOH . E 5 HOH A 114 615 126 HOH HOH . E 5 HOH A 115 616 127 HOH HOH . E 5 HOH A 116 617 132 HOH HOH . E 5 HOH A 117 618 134 HOH HOH . E 5 HOH A 118 619 135 HOH HOH . E 5 HOH A 119 620 138 HOH HOH . E 5 HOH A 120 621 139 HOH HOH . E 5 HOH A 121 622 140 HOH HOH . E 5 HOH A 122 623 147 HOH HOH . E 5 HOH A 123 624 148 HOH HOH . E 5 HOH A 124 625 149 HOH HOH . E 5 HOH A 125 626 153 HOH HOH . E 5 HOH A 126 627 154 HOH HOH . E 5 HOH A 127 628 156 HOH HOH . E 5 HOH A 128 629 157 HOH HOH . E 5 HOH A 129 630 158 HOH HOH . E 5 HOH A 130 631 160 HOH HOH . E 5 HOH A 131 632 161 HOH HOH . E 5 HOH A 132 633 162 HOH HOH . E 5 HOH A 133 634 163 HOH HOH . E 5 HOH A 134 635 164 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RPR . . . D 4 12.505 -14.871 23.483 1 21.6 ? C1 RPR 501 A 1 HETATM 2 C C2 RPR . . . D 4 12.909 -13.611 23.881 1 20.27 ? C2 RPR 501 A 1 HETATM 3 C C3 RPR . . . D 4 14.053 -13.515 24.654 1 19.74 ? C3 RPR 501 A 1 HETATM 4 C C4 RPR . . . D 4 14.769 -14.636 25.046 1 20.85 ? C4 RPR 501 A 1 HETATM 5 C C5 RPR . . . D 4 14.35 -15.894 24.655 1 22.71 ? C5 RPR 501 A 1 HETATM 6 C C6 RPR . . . D 4 13.217 -16.013 23.857 1 23.95 ? C6 RPR 501 A 1 HETATM 7 C C7 RPR . . . D 4 10.085 -11.218 22.983 1 17.97 ? C7 RPR 501 A 1 HETATM 8 C C8 RPR . . . D 4 10.782 -10.077 22.586 1 16.92 ? C8 RPR 501 A 1 HETATM 9 C C9 RPR . . . D 4 12.173 -10.112 22.643 1 17.8 ? C9 RPR 501 A 1 HETATM 10 C C10 RPR . . . D 4 12.84 -11.249 23.075 1 18.77 ? C10 RPR 501 A 1 HETATM 11 C C11 RPR . . . D 4 12.155 -12.387 23.459 1 19.25 ? C11 RPR 501 A 1 HETATM 12 C C12 RPR . . . D 4 10.771 -12.355 23.414 1 18.55 ? C12 RPR 501 A 1 HETATM 13 C C13 RPR . . . D 4 10.06 -8.868 22.145 1 16.33 ? C13 RPR 501 A 1 HETATM 14 N N14 RPR . . . D 4 10.78 -8 21.388 1 15.45 ? N14 RPR 501 A 1 HETATM 15 C C15 RPR . . . D 4 10.284 -6.678 21.006 1 15.44 ? C15 RPR 501 A 1 HETATM 16 C C16 RPR . . . D 4 10.787 -6.351 19.594 1 15.18 ? C16 RPR 501 A 1 HETATM 17 C C17 RPR . . . D 4 10.731 -5.635 22.059 1 15.91 ? C17 RPR 501 A 1 HETATM 18 C C18 RPR . . . D 4 10.081 -4.289 21.697 1 17.36 ? C18 RPR 501 A 1 HETATM 19 O O19 RPR . . . D 4 8.655 -4.363 21.668 1 18.17 ? O19 RPR 501 A 1 HETATM 20 C C20 RPR . . . D 4 12.273 -5.516 22.131 1 14.58 ? C20 RPR 501 A 1 HETATM 21 C C21 RPR . . . D 4 12.784 -17.363 23.361 1 26.01 ? C21 RPR 501 A 1 HETATM 22 N N22 RPR . . . D 4 13.285 -17.615 22.006 1 29.19 ? N22 RPR 501 A 1 HETATM 23 C C23 RPR . . . D 4 12.257 -4.518 24.481 1 12.15 ? C23 RPR 501 A 1 HETATM 24 C C24 RPR . . . D 4 12.86 -3.752 25.486 1 11.37 ? C24 RPR 501 A 1 HETATM 25 C C25 RPR . . . D 4 14.061 -3.096 25.217 1 11.48 ? C25 RPR 501 A 1 HETATM 26 C C26 RPR . . . D 4 14.629 -3.183 23.956 1 12.04 ? C26 RPR 501 A 1 HETATM 27 C C27 RPR . . . D 4 14.018 -3.936 22.964 1 12.12 ? C27 RPR 501 A 1 HETATM 28 C C28 RPR . . . D 4 12.839 -4.63 23.217 1 13.51 ? C28 RPR 501 A 1 HETATM 29 C C29 RPR . . . D 4 12.242 -3.632 26.817 1 11.3 ? C29 RPR 501 A 1 HETATM 30 N N30 RPR . . . D 4 12.949 -3.259 27.879 1 11.36 ? N30 RPR 501 A 1 HETATM 31 N N31 RPR . . . D 4 10.935 -3.912 26.963 1 12.4 ? N31 RPR 501 A 1 HETATM 32 O O32 RPR . . . D 4 10.679 -3.286 21.443 1 19.41 ? O32 RPR 501 A 1 HETATM 33 O O33 RPR . . . D 4 8.892 -8.652 22.435 1 15.73 ? O33 RPR 501 A 1 HETATM 34 C C34 RPR . . . D 4 7.904 -3.253 21.165 1 19.36 ? C34 RPR 501 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #