data_1F2B # _model_server_result.job_id J7Krxek0Ww5uJTqwgzUdiQ _model_server_result.datetime_utc '2024-11-18 02:38:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1f2b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 1F2B # _exptl.entry_id 1F2B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 645.722 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[N-[BENZYLOXYCARBONYL]-PHENYLALANINYL-AMINO]-5-PHENYL-PENTANE-1-SULFONIC ACID 4-NITRO-PHENYL ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.17 _cell.angle_gamma 90 _cell.entry_id 1F2B _cell.length_a 45.18 _cell.length_b 51.36 _cell.length_c 45.56 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1F2B _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 63 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 101 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 A SG CYS 155 A CYS 153 1_555 A SG CYS 203 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 B C27 VS3 . A VS3 300 1_555 A SG CYS 25 A CYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.827 ? # _chem_comp.formula 'C34 H35 N3 O8 S' _chem_comp.formula_weight 645.722 _chem_comp.id VS3 _chem_comp.mon_nstd_flag . _chem_comp.name '3-[N-[BENZYLOXYCARBONYL]-PHENYLALANINYL-AMINO]-5-PHENYL-PENTANE-1-SULFONIC ACID 4-NITRO-PHENYL ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1F2B _atom_sites.fract_transf_matrix[1][1] 0.022134 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.010877 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01947 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024456 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VS3 A 1 300 300 VS3 VS3 . C 3 HOH A 1 301 1 HOH HOH . C 3 HOH A 2 302 2 HOH HOH . C 3 HOH A 3 303 3 HOH HOH . C 3 HOH A 4 304 4 HOH HOH . C 3 HOH A 5 305 5 HOH HOH . C 3 HOH A 6 306 6 HOH HOH . C 3 HOH A 7 307 7 HOH HOH . C 3 HOH A 8 308 8 HOH HOH . C 3 HOH A 9 309 9 HOH HOH . C 3 HOH A 10 310 10 HOH HOH . C 3 HOH A 11 311 11 HOH HOH . C 3 HOH A 12 312 12 HOH HOH . C 3 HOH A 13 313 13 HOH HOH . C 3 HOH A 14 314 14 HOH HOH . C 3 HOH A 15 315 15 HOH HOH . C 3 HOH A 16 316 16 HOH HOH . C 3 HOH A 17 317 17 HOH HOH . C 3 HOH A 18 318 18 HOH HOH . C 3 HOH A 19 319 19 HOH HOH . C 3 HOH A 20 320 20 HOH HOH . C 3 HOH A 21 321 21 HOH HOH . C 3 HOH A 22 322 22 HOH HOH . C 3 HOH A 23 323 23 HOH HOH . C 3 HOH A 24 324 24 HOH HOH . C 3 HOH A 25 325 25 HOH HOH . C 3 HOH A 26 326 26 HOH HOH . C 3 HOH A 27 327 27 HOH HOH . C 3 HOH A 28 328 28 HOH HOH . C 3 HOH A 29 329 29 HOH HOH . C 3 HOH A 30 330 30 HOH HOH . C 3 HOH A 31 331 31 HOH HOH . C 3 HOH A 32 332 32 HOH HOH . C 3 HOH A 33 333 33 HOH HOH . C 3 HOH A 34 334 34 HOH HOH . C 3 HOH A 35 335 35 HOH HOH . C 3 HOH A 36 336 36 HOH HOH . C 3 HOH A 37 337 37 HOH HOH . C 3 HOH A 38 338 38 HOH HOH . C 3 HOH A 39 339 39 HOH HOH . C 3 HOH A 40 340 40 HOH HOH . C 3 HOH A 41 341 41 HOH HOH . C 3 HOH A 42 342 42 HOH HOH . C 3 HOH A 43 343 43 HOH HOH . C 3 HOH A 44 344 44 HOH HOH . C 3 HOH A 45 345 45 HOH HOH . C 3 HOH A 46 346 46 HOH HOH . C 3 HOH A 47 347 47 HOH HOH . C 3 HOH A 48 348 48 HOH HOH . C 3 HOH A 49 349 49 HOH HOH . C 3 HOH A 50 350 50 HOH HOH . C 3 HOH A 51 351 51 HOH HOH . C 3 HOH A 52 352 52 HOH HOH . C 3 HOH A 53 353 53 HOH HOH . C 3 HOH A 54 354 54 HOH HOH . C 3 HOH A 55 355 55 HOH HOH . C 3 HOH A 56 356 56 HOH HOH . C 3 HOH A 57 357 57 HOH HOH . C 3 HOH A 58 358 58 HOH HOH . C 3 HOH A 59 359 59 HOH HOH . C 3 HOH A 60 360 60 HOH HOH . C 3 HOH A 61 361 61 HOH HOH . C 3 HOH A 62 362 62 HOH HOH . C 3 HOH A 63 363 63 HOH HOH . C 3 HOH A 64 364 64 HOH HOH . C 3 HOH A 65 365 65 HOH HOH . C 3 HOH A 66 366 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 VS3 . . . B 2 1.221 -13.016 1.201 1 14.14 ? C1 VS3 300 A 1 HETATM 2 C C2 VS3 . . . B 2 1.038 -12.349 -0.022 1 14.44 ? C2 VS3 300 A 1 HETATM 3 C C3 VS3 . . . B 2 -0.26 -12.036 -0.468 1 16.92 ? C3 VS3 300 A 1 HETATM 4 C C4 VS3 . . . B 2 -1.371 -12.392 0.315 1 12.27 ? C4 VS3 300 A 1 HETATM 5 C C5 VS3 . . . B 2 -1.19 -13.047 1.543 1 14.36 ? C5 VS3 300 A 1 HETATM 6 C C6 VS3 . . . B 2 0.108 -13.358 1.988 1 14.13 ? C6 VS3 300 A 1 HETATM 7 C C7 VS3 . . . B 2 2.603 -13.268 1.705 1 17.69 ? C7 VS3 300 A 1 HETATM 8 O O1 VS3 . . . B 2 3.057 -12.107 2.406 1 16.47 ? O1 VS3 300 A 1 HETATM 9 C C8 VS3 . . . B 2 4.108 -12.158 3.231 1 15.81 ? C8 VS3 300 A 1 HETATM 10 O O2 VS3 . . . B 2 4.704 -13.207 3.526 1 18.41 ? O2 VS3 300 A 1 HETATM 11 N N1 VS3 . . . B 2 4.357 -10.898 3.714 1 11.12 ? N1 VS3 300 A 1 HETATM 12 C C9 VS3 . . . B 2 5.4 -10.598 4.706 1 11.7 ? C9 VS3 300 A 1 HETATM 13 C C10 VS3 . . . B 2 5.702 -9.08 4.803 1 10.6 ? C10 VS3 300 A 1 HETATM 14 C C11 VS3 . . . B 2 6.036 -8.465 3.465 1 11.96 ? C11 VS3 300 A 1 HETATM 15 C C12 VS3 . . . B 2 5.334 -7.315 3.087 1 11.11 ? C12 VS3 300 A 1 HETATM 16 C C13 VS3 . . . B 2 5.573 -6.733 1.838 1 13.49 ? C13 VS3 300 A 1 HETATM 17 C C14 VS3 . . . B 2 6.519 -7.295 0.965 1 11.58 ? C14 VS3 300 A 1 HETATM 18 C C15 VS3 . . . B 2 7.228 -8.436 1.344 1 15 ? C15 VS3 300 A 1 HETATM 19 C C16 VS3 . . . B 2 6.989 -9.02 2.593 1 11.38 ? C16 VS3 300 A 1 HETATM 20 C C17 VS3 . . . B 2 4.94 -11.061 6.028 1 13.24 ? C17 VS3 300 A 1 HETATM 21 O O3 VS3 . . . B 2 3.755 -11.039 6.389 1 10.94 ? O3 VS3 300 A 1 HETATM 22 N N2 VS3 . . . B 2 5.935 -11.427 6.853 1 15.82 ? N2 VS3 300 A 1 HETATM 23 C C18 VS3 . . . B 2 5.549 -11.754 8.218 1 17.96 ? C18 VS3 300 A 1 HETATM 24 C C19 VS3 . . . B 2 5.7 -13.32 8.449 1 16.17 ? C19 VS3 300 A 1 HETATM 25 C C20 VS3 . . . B 2 4.653 -14.164 7.734 1 19.07 ? C20 VS3 300 A 1 HETATM 26 C C21 VS3 . . . B 2 5.009 -15.609 7.903 1 19.94 ? C21 VS3 300 A 1 HETATM 27 C C22 VS3 . . . B 2 4.459 -16.43 8.903 1 24.56 ? C22 VS3 300 A 1 HETATM 28 C C23 VS3 . . . B 2 4.86 -17.777 9.023 1 22.56 ? C23 VS3 300 A 1 HETATM 29 C C24 VS3 . . . B 2 5.815 -18.295 8.132 1 22.27 ? C24 VS3 300 A 1 HETATM 30 C C25 VS3 . . . B 2 6.364 -17.477 7.124 1 23.52 ? C25 VS3 300 A 1 HETATM 31 C C26 VS3 . . . B 2 5.963 -16.137 7.016 1 23.34 ? C26 VS3 300 A 1 HETATM 32 C C28 VS3 . . . B 2 7.101 -11.718 9.897 1 21.4 ? C28 VS3 300 A 1 HETATM 33 S S1 VS3 . . . B 2 8.12 -11.797 11.15 1 15.95 ? S1 VS3 300 A 1 HETATM 34 O O4 VS3 . . . B 2 8.146 -13.247 11.39 1 27.28 ? O4 VS3 300 A 1 HETATM 35 O O5 VS3 . . . B 2 7.561 -10.98 12.217 1 18.08 ? O5 VS3 300 A 1 HETATM 36 O O29 VS3 . . . B 2 9.52 -11.275 10.775 1 24.54 ? O29 VS3 300 A 1 HETATM 37 C C30 VS3 . . . B 2 10.704 -11.956 10.994 1 22.94 ? C30 VS3 300 A 1 HETATM 38 C C31 VS3 . . . B 2 11.498 -11.691 9.871 1 22.63 ? C31 VS3 300 A 1 HETATM 39 C C32 VS3 . . . B 2 12.533 -12.535 9.551 1 23.64 ? C32 VS3 300 A 1 HETATM 40 C C33 VS3 . . . B 2 12.792 -13.646 10.376 1 29.52 ? C33 VS3 300 A 1 HETATM 41 N N3 VS3 . . . B 2 13.968 -14.457 10.047 1 34.61 ? N3 VS3 300 A 1 HETATM 42 O O8 VS3 . . . B 2 14.279 -15.411 10.793 1 35.81 ? O8 VS3 300 A 1 HETATM 43 O O9 VS3 . . . B 2 14.746 -14.167 8.974 1 36.54 ? O9 VS3 300 A 1 HETATM 44 C C34 VS3 . . . B 2 12.019 -13.912 11.568 1 24.67 ? C34 VS3 300 A 1 HETATM 45 C C35 VS3 . . . B 2 10.97 -13.047 11.877 1 24.81 ? C35 VS3 300 A 1 HETATM 46 C C27 VS3 . . . B 2 6.369 -10.895 9.18 1 17.15 ? C27 VS3 300 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 46 #