data_1F2C # _model_server_result.job_id mj7lWzzsGHJpo13KY0Vd7A _model_server_result.datetime_utc '2025-08-14 21:36:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1f2c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 1F2C # _exptl.entry_id 1F2C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 621.79 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[[N-[4-METHYL-PIPERAZINYL]CARBONYL]-PHENYLALANINYL-AMINO]-5-PHENYL-PENTANE-1-SULFONIC ACID BENZYLOXY-AMIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.74 _cell.angle_gamma 90 _cell.entry_id 1F2C _cell.length_a 36.02 _cell.length_b 51.59 _cell.length_c 54.16 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1F2C _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 63 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 101 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 155 A CYS 153 1_555 A SG CYS 203 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A SG CYS 25 A CYS 25 1_555 B C27 VS4 . A VS4 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.835 ? # _chem_comp.formula 'C33 H43 N5 O5 S' _chem_comp.formula_weight 621.79 _chem_comp.id VS4 _chem_comp.mon_nstd_flag . _chem_comp.name '3-[[N-[4-METHYL-PIPERAZINYL]CARBONYL]-PHENYLALANINYL-AMINO]-5-PHENYL-PENTANE-1-SULFONIC ACID BENZYLOXY-AMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 N3 VS4 sing 376 n n C8 O2 VS4 doub 377 n n C8 N1 VS4 sing 378 n n N3 C39 VS4 sing 379 n n N3 C48 VS4 sing 380 n n C39 C40 VS4 sing 381 n n C39 H391 VS4 sing 382 n n C39 H392 VS4 sing 383 n n C40 N4 VS4 sing 384 n n C40 H401 VS4 sing 385 n n C40 H402 VS4 sing 386 n n N4 C33 VS4 sing 387 n n N4 C49 VS4 sing 388 n n C33 H331 VS4 sing 389 n n C33 H332 VS4 sing 390 n n C33 H333 VS4 sing 391 n n C49 C48 VS4 sing 392 n n C49 H491 VS4 sing 393 n n C49 H492 VS4 sing 394 n n C48 H481 VS4 sing 395 n n C48 H482 VS4 sing 396 n n N1 C9 VS4 sing 397 n n N1 HN11 VS4 sing 398 n n C9 C10 VS4 sing 399 n n C9 C17 VS4 sing 400 n n C9 H91 VS4 sing 401 n n C10 C11 VS4 sing 402 n n C10 H101 VS4 sing 403 n n C10 H102 VS4 sing 404 n n C11 C12 VS4 doub 405 n y C11 C16 VS4 sing 406 n y C12 C13 VS4 sing 407 n y C12 H121 VS4 sing 408 n n C13 C14 VS4 doub 409 n y C13 H131 VS4 sing 410 n n C14 C15 VS4 sing 411 n y C14 H141 VS4 sing 412 n n C15 C16 VS4 doub 413 n y C15 H151 VS4 sing 414 n n C16 H161 VS4 sing 415 n n C17 O3 VS4 doub 416 n n C17 N2 VS4 sing 417 n n N2 C18 VS4 sing 418 n n N2 HN21 VS4 sing 419 n n C18 C19 VS4 sing 420 n n C18 C27 VS4 sing 421 n n C18 H181 VS4 sing 422 n n C19 C20 VS4 sing 423 n n C19 H191 VS4 sing 424 n n C19 H192 VS4 sing 425 n n C20 C21 VS4 sing 426 n n C20 H201 VS4 sing 427 n n C20 H202 VS4 sing 428 n n C21 C22 VS4 doub 429 n y C21 C26 VS4 sing 430 n y C22 C23 VS4 sing 431 n y C22 H221 VS4 sing 432 n n C23 C24 VS4 doub 433 n y C23 H231 VS4 sing 434 n n C24 C25 VS4 sing 435 n y C24 H241 VS4 sing 436 n n C25 C26 VS4 doub 437 n y C25 H251 VS4 sing 438 n n C26 H261 VS4 sing 439 n n C28 S1 VS4 sing 440 n n C28 C27 VS4 sing 441 n n C28 H281 VS4 sing 442 n n C28 H282 VS4 sing 443 n n S1 N5 VS4 sing 444 n n S1 O4 VS4 doub 445 n n S1 O5 VS4 doub 446 n n N5 O6 VS4 sing 447 n n N5 HN51 VS4 sing 448 n n O6 C34 VS4 sing 449 n n C34 C41 VS4 sing 450 n n C34 H341 VS4 sing 451 n n C34 H342 VS4 sing 452 n n C41 C42 VS4 doub 453 n y C41 C46 VS4 sing 454 n y C42 C43 VS4 sing 455 n y C42 H421 VS4 sing 456 n n C43 C44 VS4 doub 457 n y C43 H431 VS4 sing 458 n n C44 C45 VS4 sing 459 n y C44 H441 VS4 sing 460 n n C45 C46 VS4 doub 461 n y C45 H451 VS4 sing 462 n n C46 H461 VS4 sing 463 n n C27 H271 VS4 sing 464 n n C27 H272 VS4 sing 465 n n # _atom_sites.entry_id 1F2C _atom_sites.fract_transf_matrix[1][1] 0.027762 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004765 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019384 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018734 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VS4 A 1 300 300 VS4 VS4 . C 3 HOH A 1 301 1 HOH HOH . C 3 HOH A 2 302 2 HOH HOH . C 3 HOH A 3 303 3 HOH HOH . C 3 HOH A 4 304 4 HOH HOH . C 3 HOH A 5 305 5 HOH HOH . C 3 HOH A 6 306 6 HOH HOH . C 3 HOH A 7 307 7 HOH HOH . C 3 HOH A 8 308 8 HOH HOH . C 3 HOH A 9 309 9 HOH HOH . C 3 HOH A 10 310 10 HOH HOH . C 3 HOH A 11 311 11 HOH HOH . C 3 HOH A 12 312 12 HOH HOH . C 3 HOH A 13 313 13 HOH HOH . C 3 HOH A 14 314 14 HOH HOH . C 3 HOH A 15 315 15 HOH HOH . C 3 HOH A 16 316 16 HOH HOH . C 3 HOH A 17 317 17 HOH HOH . C 3 HOH A 18 318 18 HOH HOH . C 3 HOH A 19 319 19 HOH HOH . C 3 HOH A 20 320 20 HOH HOH . C 3 HOH A 21 321 21 HOH HOH . C 3 HOH A 22 322 22 HOH HOH . C 3 HOH A 23 323 23 HOH HOH . C 3 HOH A 24 324 24 HOH HOH . C 3 HOH A 25 325 25 HOH HOH . C 3 HOH A 26 326 26 HOH HOH . C 3 HOH A 27 327 27 HOH HOH . C 3 HOH A 28 328 28 HOH HOH . C 3 HOH A 29 329 29 HOH HOH . C 3 HOH A 30 330 30 HOH HOH . C 3 HOH A 31 331 31 HOH HOH . C 3 HOH A 32 332 32 HOH HOH . C 3 HOH A 33 333 33 HOH HOH . C 3 HOH A 34 334 34 HOH HOH . C 3 HOH A 35 335 35 HOH HOH . C 3 HOH A 36 336 36 HOH HOH . C 3 HOH A 37 337 37 HOH HOH . C 3 HOH A 38 338 38 HOH HOH . C 3 HOH A 39 339 39 HOH HOH . C 3 HOH A 40 340 40 HOH HOH . C 3 HOH A 41 341 41 HOH HOH . C 3 HOH A 42 342 42 HOH HOH . C 3 HOH A 43 343 43 HOH HOH . C 3 HOH A 44 344 44 HOH HOH . C 3 HOH A 45 345 45 HOH HOH . C 3 HOH A 46 346 46 HOH HOH . C 3 HOH A 47 347 47 HOH HOH . C 3 HOH A 48 348 48 HOH HOH . C 3 HOH A 49 349 49 HOH HOH . C 3 HOH A 50 350 50 HOH HOH . C 3 HOH A 51 351 51 HOH HOH . C 3 HOH A 52 352 52 HOH HOH . C 3 HOH A 53 353 53 HOH HOH . C 3 HOH A 54 354 54 HOH HOH . C 3 HOH A 55 355 55 HOH HOH . C 3 HOH A 56 356 56 HOH HOH . C 3 HOH A 57 357 57 HOH HOH . C 3 HOH A 58 358 58 HOH HOH . C 3 HOH A 59 359 59 HOH HOH . C 3 HOH A 60 360 60 HOH HOH . C 3 HOH A 61 361 61 HOH HOH . C 3 HOH A 62 362 62 HOH HOH . C 3 HOH A 63 363 63 HOH HOH . C 3 HOH A 64 364 64 HOH HOH . C 3 HOH A 65 365 65 HOH HOH . C 3 HOH A 66 366 66 HOH HOH . C 3 HOH A 67 367 67 HOH HOH . C 3 HOH A 68 368 68 HOH HOH . C 3 HOH A 69 369 69 HOH HOH . C 3 HOH A 70 370 70 HOH HOH . C 3 HOH A 71 371 71 HOH HOH . C 3 HOH A 72 372 72 HOH HOH . C 3 HOH A 73 373 73 HOH HOH . C 3 HOH A 74 374 74 HOH HOH . C 3 HOH A 75 375 75 HOH HOH . C 3 HOH A 76 376 76 HOH HOH . C 3 HOH A 77 377 77 HOH HOH . C 3 HOH A 78 378 78 HOH HOH . C 3 HOH A 79 379 79 HOH HOH . C 3 HOH A 80 380 80 HOH HOH . C 3 HOH A 81 381 81 HOH HOH . C 3 HOH A 82 382 82 HOH HOH . C 3 HOH A 83 383 83 HOH HOH . C 3 HOH A 84 384 84 HOH HOH . C 3 HOH A 85 385 85 HOH HOH . C 3 HOH A 86 386 86 HOH HOH . C 3 HOH A 87 387 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 VS4 . . . B 2 -5.487 -6.325 10.462 1 19.29 ? C8 VS4 300 A 1 HETATM 2 N N3 VS4 . . . B 2 -6.03 -5.067 10.217 1 21.54 ? N3 VS4 300 A 1 HETATM 3 C C39 VS4 . . . B 2 -5.21 -3.915 9.74 1 25.41 ? C39 VS4 300 A 1 HETATM 4 C C40 VS4 . . . B 2 -6.045 -2.981 8.847 1 28.38 ? C40 VS4 300 A 1 HETATM 5 N N4 VS4 . . . B 2 -7.279 -2.554 9.555 1 30.51 ? N4 VS4 300 A 1 HETATM 6 C C33 VS4 . . . B 2 -8.036 -1.707 8.616 1 31.78 ? C33 VS4 300 A 1 HETATM 7 C C49 VS4 . . . B 2 -8.121 -3.735 9.922 1 28.69 ? C49 VS4 300 A 1 HETATM 8 C C48 VS4 . . . B 2 -7.338 -4.694 10.834 1 25.91 ? C48 VS4 300 A 1 HETATM 9 O O2 VS4 . . . B 2 -6.176 -7.221 10.987 1 18.93 ? O2 VS4 300 A 1 HETATM 10 N N1 VS4 . . . B 2 -4.139 -6.539 10.154 1 11.92 ? N1 VS4 300 A 1 HETATM 11 C C9 VS4 . . . B 2 -3.431 -7.788 10.568 1 8.1 ? C9 VS4 300 A 1 HETATM 12 C C10 VS4 . . . B 2 -1.918 -7.821 10.22 1 9.24 ? C10 VS4 300 A 1 HETATM 13 C C11 VS4 . . . B 2 -1.625 -7.398 8.817 1 9.79 ? C11 VS4 300 A 1 HETATM 14 C C12 VS4 . . . B 2 -0.464 -6.65 8.604 1 7.52 ? C12 VS4 300 A 1 HETATM 15 C C13 VS4 . . . B 2 -0.197 -6.12 7.336 1 8.4 ? C13 VS4 300 A 1 HETATM 16 C C14 VS4 . . . B 2 -1.097 -6.337 6.28 1 9.23 ? C14 VS4 300 A 1 HETATM 17 C C15 VS4 . . . B 2 -2.253 -7.094 6.494 1 11.68 ? C15 VS4 300 A 1 HETATM 18 C C16 VS4 . . . B 2 -2.517 -7.631 7.761 1 8.66 ? C16 VS4 300 A 1 HETATM 19 C C17 VS4 . . . B 2 -3.513 -7.991 12.052 1 7.5 ? C17 VS4 300 A 1 HETATM 20 O O3 VS4 . . . B 2 -3.316 -7.083 12.865 1 3.18 ? O3 VS4 300 A 1 HETATM 21 N N2 VS4 . . . B 2 -3.736 -9.256 12.482 1 8.1 ? N2 VS4 300 A 1 HETATM 22 C C18 VS4 . . . B 2 -3.792 -9.466 13.92 1 8.24 ? C18 VS4 300 A 1 HETATM 23 C C19 VS4 . . . B 2 -5.277 -9.721 14.328 1 9.94 ? C19 VS4 300 A 1 HETATM 24 C C20 VS4 . . . B 2 -6.244 -8.584 14.057 1 11.07 ? C20 VS4 300 A 1 HETATM 25 C C21 VS4 . . . B 2 -7.659 -8.962 14.388 1 13.42 ? C21 VS4 300 A 1 HETATM 26 C C22 VS4 . . . B 2 -8.019 -9.619 15.577 1 16.93 ? C22 VS4 300 A 1 HETATM 27 C C23 VS4 . . . B 2 -9.367 -9.864 15.863 1 20.87 ? C23 VS4 300 A 1 HETATM 28 C C24 VS4 . . . B 2 -10.366 -9.458 14.964 1 18.2 ? C24 VS4 300 A 1 HETATM 29 C C25 VS4 . . . B 2 -10.019 -8.8 13.78 1 16.45 ? C25 VS4 300 A 1 HETATM 30 C C26 VS4 . . . B 2 -8.667 -8.554 13.497 1 18.45 ? C26 VS4 300 A 1 HETATM 31 C C28 VS4 . . . B 2 -3.666 -11.752 14.277 1 10.18 ? C28 VS4 300 A 1 HETATM 32 S S1 VS4 . . . B 2 -3.567 -13.227 15.055 1 7.81 ? S1 VS4 300 A 1 HETATM 33 N N5 VS4 . . . B 2 -3.829 -14.444 13.984 1 11.72 ? N5 VS4 300 A 1 HETATM 34 O O6 VS4 . . . B 2 -5.014 -14.442 13.165 1 14.89 ? O6 VS4 300 A 1 HETATM 35 C C34 VS4 . . . B 2 -4.887 -15.507 12.249 1 17.49 ? C34 VS4 300 A 1 HETATM 36 C C41 VS4 . . . B 2 -6.17 -15.686 11.518 1 21.62 ? C41 VS4 300 A 1 HETATM 37 C C42 VS4 . . . B 2 -6.905 -16.874 11.68 1 23.05 ? C42 VS4 300 A 1 HETATM 38 C C43 VS4 . . . B 2 -8.142 -17.025 11.032 1 25.4 ? C43 VS4 300 A 1 HETATM 39 C C44 VS4 . . . B 2 -8.631 -15.981 10.215 1 26.29 ? C44 VS4 300 A 1 HETATM 40 C C45 VS4 . . . B 2 -7.882 -14.797 10.042 1 25.5 ? C45 VS4 300 A 1 HETATM 41 C C46 VS4 . . . B 2 -6.657 -14.653 10.709 1 21.68 ? C46 VS4 300 A 1 HETATM 42 O O4 VS4 . . . B 2 -4.699 -13.114 15.905 1 10.14 ? O4 VS4 300 A 1 HETATM 43 O O5 VS4 . . . B 2 -2.298 -13.39 15.739 1 11.18 ? O5 VS4 300 A 1 HETATM 44 C C27 VS4 . . . B 2 -2.966 -10.625 14.435 1 9.07 ? C27 VS4 300 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #