data_1F2Q # _model_server_result.job_id 2BHg6JxgpiJVs-DCRXQEnQ _model_server_result.datetime_utc '2025-04-09 04:35:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1f2q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":221}' # _entry.id 1F2Q # _exptl.entry_id 1F2Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.69 _cell.angle_gamma 90 _cell.entry_id 1F2Q _cell.length_a 88.59 _cell.length_b 69.64 _cell.length_c 49.36 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1F2Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 MAN NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG C 242 NAG 2 n B NAG 2 B 2 NAG C 243 NAG 2 n B MAN 3 B 3 MAN C 244 MAN 2 n C NAG 1 C 1 NAG C 366 NAG 2 n C NAG 2 C 2 NAG C 367 NAG 2 n C MAN 3 C 3 MAN C 368 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 68 A CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 107 A CYS 107 1_555 A SG CYS 151 A CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? covale ? covale1 A ND2 ASN 21 A ASN 21 1_555 D C1 NAG . A NAG 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale2 A ND2 ASN 42 A ASN 42 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale3 A ND2 ASN 166 A ASN 166 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? covale ? covale5 B O4 NAG . B NAG 2 1_555 B C1 MAN . B MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.397 ? covale ? covale7 C O4 NAG . C NAG 2 1_555 C C1 MAN . C MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 261 n n C1 O1 NAG sing 262 n n C1 O5 NAG sing 263 n n C1 H1 NAG sing 264 n n C2 C3 NAG sing 265 n n C2 N2 NAG sing 266 n n C2 H2 NAG sing 267 n n C3 C4 NAG sing 268 n n C3 O3 NAG sing 269 n n C3 H3 NAG sing 270 n n C4 C5 NAG sing 271 n n C4 O4 NAG sing 272 n n C4 H4 NAG sing 273 n n C5 C6 NAG sing 274 n n C5 O5 NAG sing 275 n n C5 H5 NAG sing 276 n n C6 O6 NAG sing 277 n n C6 H61 NAG sing 278 n n C6 H62 NAG sing 279 n n C7 C8 NAG sing 280 n n C7 N2 NAG sing 281 n n C7 O7 NAG doub 282 n n C8 H81 NAG sing 283 n n C8 H82 NAG sing 284 n n C8 H83 NAG sing 285 n n N2 HN2 NAG sing 286 n n O1 HO1 NAG sing 287 n n O3 HO3 NAG sing 288 n n O4 HO4 NAG sing 289 n n O6 HO6 NAG sing 290 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1F2Q _atom_sites.fract_transf_matrix[1][1] 0.011288 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005675 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01436 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022675 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NAG A 1 221 221 NAG NAG . E 4 HOH A 1 1000 1000 HOH WAT . E 4 HOH A 2 1001 1001 HOH WAT . E 4 HOH A 3 1002 1002 HOH WAT . E 4 HOH A 4 1003 1003 HOH WAT . E 4 HOH A 5 1004 1004 HOH WAT . E 4 HOH A 6 1005 1005 HOH WAT . E 4 HOH A 7 1006 1006 HOH WAT . E 4 HOH A 8 1007 1007 HOH WAT . E 4 HOH A 9 1008 1008 HOH WAT . E 4 HOH A 10 1009 1009 HOH WAT . E 4 HOH A 11 1010 1010 HOH WAT . E 4 HOH A 12 1011 1011 HOH WAT . E 4 HOH A 13 1012 1012 HOH WAT . E 4 HOH A 14 1013 1013 HOH WAT . E 4 HOH A 15 1014 1014 HOH WAT . E 4 HOH A 16 1015 1015 HOH WAT . E 4 HOH A 17 1016 1016 HOH WAT . E 4 HOH A 18 1017 1017 HOH WAT . E 4 HOH A 19 1018 1018 HOH WAT . E 4 HOH A 20 1019 1019 HOH WAT . E 4 HOH A 21 1020 1020 HOH WAT . E 4 HOH A 22 1021 1021 HOH WAT . E 4 HOH A 23 1022 1022 HOH WAT . E 4 HOH A 24 1023 1023 HOH WAT . E 4 HOH A 25 1024 1024 HOH WAT . E 4 HOH A 26 1025 1025 HOH WAT . E 4 HOH A 27 1026 1026 HOH WAT . E 4 HOH A 28 1027 1027 HOH WAT . E 4 HOH A 29 1028 1028 HOH WAT . E 4 HOH A 30 1029 1029 HOH WAT . E 4 HOH A 31 1030 1030 HOH WAT . E 4 HOH A 32 1031 1031 HOH WAT . E 4 HOH A 33 1032 1032 HOH WAT . E 4 HOH A 34 1033 1033 HOH WAT . E 4 HOH A 35 1034 1034 HOH WAT . E 4 HOH A 36 1035 1035 HOH WAT . E 4 HOH A 37 1036 1036 HOH WAT . E 4 HOH A 38 1037 1037 HOH WAT . E 4 HOH A 39 1038 1038 HOH WAT . E 4 HOH A 40 1039 1039 HOH WAT . E 4 HOH A 41 1040 1040 HOH WAT . E 4 HOH A 42 1041 1041 HOH WAT . E 4 HOH A 43 1042 1042 HOH WAT . E 4 HOH A 44 1043 1043 HOH WAT . E 4 HOH A 45 1044 1044 HOH WAT . E 4 HOH A 46 1045 1045 HOH WAT . E 4 HOH A 47 1046 1046 HOH WAT . E 4 HOH A 48 1047 1047 HOH WAT . E 4 HOH A 49 1048 1048 HOH WAT . E 4 HOH A 50 1049 1049 HOH WAT . E 4 HOH A 51 1050 1050 HOH WAT . E 4 HOH A 52 1051 1051 HOH WAT . E 4 HOH A 53 1052 1052 HOH WAT . E 4 HOH A 54 1053 1053 HOH WAT . E 4 HOH A 55 1054 1054 HOH WAT . E 4 HOH A 56 1055 1055 HOH WAT . E 4 HOH A 57 1056 1056 HOH WAT . E 4 HOH A 58 1057 1057 HOH WAT . E 4 HOH A 59 1058 1058 HOH WAT . E 4 HOH A 60 1059 1059 HOH WAT . E 4 HOH A 61 1060 1060 HOH WAT . E 4 HOH A 62 1061 1061 HOH WAT . E 4 HOH A 63 1062 1062 HOH WAT . E 4 HOH A 64 1063 1063 HOH WAT . E 4 HOH A 65 1064 1064 HOH WAT . E 4 HOH A 66 1065 1065 HOH WAT . E 4 HOH A 67 1066 1066 HOH WAT . E 4 HOH A 68 1067 1067 HOH WAT . E 4 HOH A 69 1068 1068 HOH WAT . E 4 HOH A 70 1069 1069 HOH WAT . E 4 HOH A 71 1070 1070 HOH WAT . E 4 HOH A 72 1071 1071 HOH WAT . E 4 HOH A 73 1072 1072 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 3 25.542 -8.075 14.854 1 105.04 ? C1 NAG 221 A 1 HETATM 2 C C2 NAG . . . D 3 26.102 -8.916 13.697 1 114.38 ? C2 NAG 221 A 1 HETATM 3 C C3 NAG . . . D 3 25.873 -10.408 13.967 1 119.53 ? C3 NAG 221 A 1 HETATM 4 C C4 NAG . . . D 3 26.437 -10.794 15.338 1 120.81 ? C4 NAG 221 A 1 HETATM 5 C C5 NAG . . . D 3 25.894 -9.86 16.43 1 118.68 ? C5 NAG 221 A 1 HETATM 6 C C6 NAG . . . D 3 26.556 -10.126 17.77 1 119.48 ? C6 NAG 221 A 1 HETATM 7 C C7 NAG . . . D 3 26.209 -8.11 11.428 1 118.64 ? C7 NAG 221 A 1 HETATM 8 C C8 NAG . . . D 3 25.479 -7.73 10.15 1 118.61 ? C8 NAG 221 A 1 HETATM 9 N N2 NAG . . . D 3 25.469 -8.537 12.448 1 118.43 ? N2 NAG 221 A 1 HETATM 10 O O3 NAG . . . D 3 26.509 -11.181 12.958 1 114.59 ? O3 NAG 221 A 1 HETATM 11 O O4 NAG . . . D 3 26.085 -12.139 15.639 1 120.79 ? O4 NAG 221 A 1 HETATM 12 O O5 NAG . . . D 3 26.157 -8.476 16.09 1 111.17 ? O5 NAG 221 A 1 HETATM 13 O O6 NAG . . . D 3 26.157 -9.173 18.743 1 118.69 ? O6 NAG 221 A 1 HETATM 14 O O7 NAG . . . D 3 27.435 -8.016 11.484 1 118.17 ? O7 NAG 221 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #