data_1F3J
#
_model_server_result.job_id            R2CXr_bo8V3QLPxc3Ks_Jg 
_model_server_result.datetime_utc      '2025-02-05 12:02:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1f3j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1001}' 
#
_entry.id    1F3J 
#
_exptl.entry_id    1F3J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1F3J 
_cell.length_a            109.54 
_cell.length_b            109.54 
_cell.length_c            176.36 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1F3J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 108 A CYS 107 1_555 A SG CYS 164 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf2 B SG CYS 12 B CYS 15 1_555 B SG CYS 74 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf3 B SG CYS 113 B CYS 117 1_555 B SG CYS 169 B CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf4 D SG CYS 108 D CYS 107 1_555 D SG CYS 164 D CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf5 E SG CYS 12 E CYS 15 1_555 E SG CYS 74 E CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf6 E SG CYS 113 E CYS 117 1_555 E SG CYS 169 E CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
covale ? covale1 A ND2 ASN 79 A ASN 78 1_555 G C1 NAG . A NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? 
covale ? covale2 A ND2 ASN 119 A ASN 118 1_555 H C1 NAG . A NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? 
covale ? covale3 B ND2 ASN 16 B ASN 19 1_555 I C1 NAG . B NAG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? 
covale ? covale4 D ND2 ASN 79 D ASN 78 1_555 J C1 NAG . D NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale5 D ND2 ASN 119 D ASN 118 1_555 K C1 NAG . D NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale6 E ND2 ASN 16 E ASN 19 1_555 L C1 NAG . E NAG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     1F3J 
_atom_sites.fract_transf_matrix[1][1]    0.009129 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009129 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00567 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 NAG A 1 1001 1 NAG NAG . 
H 4 NAG A 1 1002 2 NAG NAG . 
I 4 NAG B 1 1003 3 NAG NAG . 
J 4 NAG D 1 1001 1 NAG NAG . 
K 4 NAG D 1 1002 2 NAG NAG . 
L 4 NAG E 1 1003 3 NAG NAG . 
M 5 HOH A 1 1003 3 HOH WAT . 
M 5 HOH A 2 1004 5 HOH WAT . 
M 5 HOH A 3 1005 19 HOH WAT . 
M 5 HOH A 4 1006 21 HOH WAT . 
M 5 HOH A 5 1007 23 HOH WAT . 
M 5 HOH A 6 1008 27 HOH WAT . 
M 5 HOH A 7 1009 32 HOH WAT . 
M 5 HOH A 8 1010 36 HOH WAT . 
M 5 HOH A 9 1011 39 HOH WAT . 
M 5 HOH A 10 1012 40 HOH WAT . 
M 5 HOH A 11 1013 42 HOH WAT . 
M 5 HOH A 12 1014 46 HOH WAT . 
M 5 HOH A 13 1015 50 HOH WAT . 
M 5 HOH A 14 1016 52 HOH WAT . 
M 5 HOH A 15 1017 55 HOH WAT . 
M 5 HOH A 16 1018 56 HOH WAT . 
M 5 HOH A 17 1019 60 HOH WAT . 
M 5 HOH A 18 1020 68 HOH WAT . 
M 5 HOH A 19 1021 72 HOH WAT . 
N 5 HOH B 1 1004 1 HOH WAT . 
N 5 HOH B 2 1005 12 HOH WAT . 
N 5 HOH B 3 1006 13 HOH WAT . 
N 5 HOH B 4 1007 17 HOH WAT . 
N 5 HOH B 5 1008 20 HOH WAT . 
N 5 HOH B 6 1009 24 HOH WAT . 
N 5 HOH B 7 1010 28 HOH WAT . 
N 5 HOH B 8 1011 30 HOH WAT . 
N 5 HOH B 9 1012 31 HOH WAT . 
N 5 HOH B 10 1013 34 HOH WAT . 
N 5 HOH B 11 1014 35 HOH WAT . 
N 5 HOH B 12 1015 38 HOH WAT . 
N 5 HOH B 13 1016 43 HOH WAT . 
N 5 HOH B 14 1017 44 HOH WAT . 
N 5 HOH B 15 1018 45 HOH WAT . 
N 5 HOH B 16 1019 48 HOH WAT . 
N 5 HOH B 17 1020 49 HOH WAT . 
N 5 HOH B 18 1021 51 HOH WAT . 
N 5 HOH B 19 1022 57 HOH WAT . 
N 5 HOH B 20 1023 59 HOH WAT . 
N 5 HOH B 21 1024 61 HOH WAT . 
N 5 HOH B 22 1025 62 HOH WAT . 
N 5 HOH B 23 1026 63 HOH WAT . 
N 5 HOH B 24 1027 64 HOH WAT . 
N 5 HOH B 25 1028 70 HOH WAT . 
N 5 HOH B 26 1029 71 HOH WAT . 
O 5 HOH P 1 2 2 HOH WAT . 
O 5 HOH P 2 4 4 HOH WAT . 
P 5 HOH D 1 1003 8 HOH WAT . 
P 5 HOH D 2 1004 10 HOH WAT . 
P 5 HOH D 3 1005 11 HOH WAT . 
P 5 HOH D 4 1006 15 HOH WAT . 
P 5 HOH D 5 1007 18 HOH WAT . 
P 5 HOH D 6 1008 22 HOH WAT . 
P 5 HOH D 7 1009 26 HOH WAT . 
P 5 HOH D 8 1010 33 HOH WAT . 
P 5 HOH D 9 1011 58 HOH WAT . 
P 5 HOH D 10 1012 65 HOH WAT . 
P 5 HOH D 11 1013 66 HOH WAT . 
P 5 HOH D 12 1014 67 HOH WAT . 
Q 5 HOH E 1 1004 6 HOH WAT . 
Q 5 HOH E 2 1005 14 HOH WAT . 
Q 5 HOH E 3 1006 16 HOH WAT . 
Q 5 HOH E 4 1007 25 HOH WAT . 
Q 5 HOH E 5 1008 29 HOH WAT . 
Q 5 HOH E 6 1009 37 HOH WAT . 
Q 5 HOH E 7 1010 41 HOH WAT . 
Q 5 HOH E 8 1011 47 HOH WAT . 
Q 5 HOH E 9 1012 53 HOH WAT . 
Q 5 HOH E 10 1013 54 HOH WAT . 
Q 5 HOH E 11 1014 69 HOH WAT . 
R 5 HOH Q 1 7 7 HOH WAT . 
R 5 HOH Q 2 9 9 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . G 4 42.696 52.19 44.791 1 74.68 ? C1 NAG 1001 A 1 
HETATM 2 C C2 NAG . . . G 4 41.801 52.499 46.026 1 75.49 ? C2 NAG 1001 A 1 
HETATM 3 C C3 NAG . . . G 4 42.533 53.448 46.994 1 75.97 ? C3 NAG 1001 A 1 
HETATM 4 C C4 NAG . . . G 4 43.907 52.867 47.356 1 76.07 ? C4 NAG 1001 A 1 
HETATM 5 C C5 NAG . . . G 4 44.7 52.602 46.063 1 75.63 ? C5 NAG 1001 A 1 
HETATM 6 C C6 NAG . . . G 4 46.065 51.993 46.321 1 75.08 ? C6 NAG 1001 A 1 
HETATM 7 C C7 NAG . . . G 4 39.887 52.675 44.563 1 76.92 ? C7 NAG 1001 A 1 
HETATM 8 C C8 NAG . . . G 4 39.932 53.543 43.317 1 76.4 ? C8 NAG 1001 A 1 
HETATM 9 N N2 NAG . . . G 4 40.546 53.113 45.63 1 76.46 ? N2 NAG 1001 A 1 
HETATM 10 O O3 NAG . . . G 4 41.753 53.647 48.17 1 74.7 ? O3 NAG 1001 A 1 
HETATM 11 O O4 NAG . . . G 4 44.614 53.775 48.19 1 76.66 ? O4 NAG 1001 A 1 
HETATM 12 O O5 NAG . . . G 4 43.975 51.675 45.218 1 75.43 ? O5 NAG 1001 A 1 
HETATM 13 O O6 NAG . . . G 4 45.959 50.812 47.102 1 75.31 ? O6 NAG 1001 A 1 
HETATM 14 O O7 NAG . . . G 4 39.262 51.611 44.55 1 77.38 ? O7 NAG 1001 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#