data_1F3L # _model_server_result.job_id wwmIqembUsROuXn0-Hdo_g _model_server_result.datetime_utc '2024-12-04 05:52:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1f3l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":529}' # _entry.id 1F3L # _exptl.entry_id 1F3L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1F3L _cell.length_a 70.91 _cell.length_b 70.91 _cell.length_c 177.66 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1F3L _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_777 -y+2,-x+2,-z+5/2 0 -1 0 -1 0 0 0 0 -1 141.82 141.82 444.15 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 1F3L _atom_sites.fract_transf_matrix[1][1] 0.014102 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014102 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005629 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 529 529 SAH SAH . C 3 HOH A 1 1 1 HOH TIP . C 3 HOH A 2 2 2 HOH TIP . C 3 HOH A 3 3 3 HOH TIP . C 3 HOH A 4 4 4 HOH TIP . C 3 HOH A 5 5 5 HOH TIP . C 3 HOH A 6 6 6 HOH TIP . C 3 HOH A 7 7 7 HOH TIP . C 3 HOH A 8 8 8 HOH TIP . C 3 HOH A 9 9 9 HOH TIP . C 3 HOH A 10 10 10 HOH TIP . C 3 HOH A 11 11 11 HOH TIP . C 3 HOH A 12 12 12 HOH TIP . C 3 HOH A 13 13 13 HOH TIP . C 3 HOH A 14 14 14 HOH TIP . C 3 HOH A 15 15 15 HOH TIP . C 3 HOH A 16 16 16 HOH TIP . C 3 HOH A 17 17 17 HOH TIP . C 3 HOH A 18 18 18 HOH TIP . C 3 HOH A 19 19 19 HOH TIP . C 3 HOH A 20 20 20 HOH TIP . C 3 HOH A 21 21 21 HOH TIP . C 3 HOH A 22 22 22 HOH TIP . C 3 HOH A 23 23 23 HOH TIP . C 3 HOH A 24 24 24 HOH TIP . C 3 HOH A 25 25 25 HOH TIP . C 3 HOH A 26 26 26 HOH TIP . C 3 HOH A 27 27 27 HOH TIP . C 3 HOH A 28 28 28 HOH TIP . C 3 HOH A 29 29 29 HOH TIP . C 3 HOH A 30 30 30 HOH TIP . C 3 HOH A 31 31 31 HOH TIP . C 3 HOH A 32 32 32 HOH TIP . C 3 HOH A 33 33 33 HOH TIP . C 3 HOH A 34 34 34 HOH TIP . C 3 HOH A 35 35 35 HOH TIP . C 3 HOH A 36 36 36 HOH TIP . C 3 HOH A 37 37 37 HOH TIP . C 3 HOH A 38 38 38 HOH TIP . C 3 HOH A 39 39 39 HOH TIP . C 3 HOH A 40 40 40 HOH TIP . C 3 HOH A 41 41 41 HOH TIP . C 3 HOH A 42 42 42 HOH TIP . C 3 HOH A 43 43 43 HOH TIP . C 3 HOH A 44 44 44 HOH TIP . C 3 HOH A 45 45 45 HOH TIP . C 3 HOH A 46 46 46 HOH TIP . C 3 HOH A 47 47 47 HOH TIP . C 3 HOH A 48 48 48 HOH TIP . C 3 HOH A 49 49 49 HOH TIP . C 3 HOH A 50 50 50 HOH TIP . C 3 HOH A 51 51 51 HOH TIP . C 3 HOH A 52 52 52 HOH TIP . C 3 HOH A 53 53 53 HOH TIP . C 3 HOH A 54 54 54 HOH TIP . C 3 HOH A 55 55 55 HOH TIP . C 3 HOH A 56 56 56 HOH TIP . C 3 HOH A 57 57 57 HOH TIP . C 3 HOH A 58 58 58 HOH TIP . C 3 HOH A 59 59 59 HOH TIP . C 3 HOH A 60 60 60 HOH TIP . C 3 HOH A 61 61 61 HOH TIP . C 3 HOH A 62 62 62 HOH TIP . C 3 HOH A 63 63 63 HOH TIP . C 3 HOH A 64 64 64 HOH TIP . C 3 HOH A 65 65 65 HOH TIP . C 3 HOH A 66 66 66 HOH TIP . C 3 HOH A 67 67 67 HOH TIP . C 3 HOH A 68 68 68 HOH TIP . C 3 HOH A 69 69 69 HOH TIP . C 3 HOH A 70 70 70 HOH TIP . C 3 HOH A 71 71 71 HOH TIP . C 3 HOH A 72 72 72 HOH TIP . C 3 HOH A 73 73 73 HOH TIP . C 3 HOH A 74 74 74 HOH TIP . C 3 HOH A 75 75 75 HOH TIP . C 3 HOH A 76 76 76 HOH TIP . C 3 HOH A 77 77 77 HOH TIP . C 3 HOH A 78 78 78 HOH TIP . C 3 HOH A 79 79 79 HOH TIP . C 3 HOH A 80 80 80 HOH TIP . C 3 HOH A 81 81 81 HOH TIP . C 3 HOH A 82 82 82 HOH TIP . C 3 HOH A 83 83 83 HOH TIP . C 3 HOH A 84 84 84 HOH TIP . C 3 HOH A 85 85 85 HOH TIP . C 3 HOH A 86 86 86 HOH TIP . C 3 HOH A 87 87 87 HOH TIP . C 3 HOH A 88 88 88 HOH TIP . C 3 HOH A 89 89 89 HOH TIP . C 3 HOH A 90 90 90 HOH TIP . C 3 HOH A 91 91 91 HOH TIP . C 3 HOH A 92 92 92 HOH TIP . C 3 HOH A 93 93 93 HOH TIP . C 3 HOH A 94 94 94 HOH TIP . C 3 HOH A 95 95 95 HOH TIP . C 3 HOH A 96 96 96 HOH TIP . C 3 HOH A 97 97 97 HOH TIP . C 3 HOH A 98 98 98 HOH TIP . C 3 HOH A 99 99 99 HOH TIP . C 3 HOH A 100 100 100 HOH TIP . C 3 HOH A 101 101 101 HOH TIP . C 3 HOH A 102 102 102 HOH TIP . C 3 HOH A 103 103 103 HOH TIP . C 3 HOH A 104 104 104 HOH TIP . C 3 HOH A 105 105 105 HOH TIP . C 3 HOH A 106 106 106 HOH TIP . C 3 HOH A 107 107 107 HOH TIP . C 3 HOH A 108 108 108 HOH TIP . C 3 HOH A 109 109 109 HOH TIP . C 3 HOH A 110 110 110 HOH TIP . C 3 HOH A 111 111 111 HOH TIP . C 3 HOH A 112 112 112 HOH TIP . C 3 HOH A 113 113 113 HOH TIP . C 3 HOH A 114 114 114 HOH TIP . C 3 HOH A 115 115 115 HOH TIP . C 3 HOH A 116 116 116 HOH TIP . C 3 HOH A 117 117 117 HOH TIP . C 3 HOH A 118 118 118 HOH TIP . C 3 HOH A 119 119 119 HOH TIP . C 3 HOH A 120 120 120 HOH TIP . C 3 HOH A 121 121 121 HOH TIP . C 3 HOH A 122 122 122 HOH TIP . C 3 HOH A 123 123 123 HOH TIP . C 3 HOH A 124 124 124 HOH TIP . C 3 HOH A 125 125 125 HOH TIP . C 3 HOH A 126 126 126 HOH TIP . C 3 HOH A 127 127 127 HOH TIP . C 3 HOH A 128 128 128 HOH TIP . C 3 HOH A 129 129 129 HOH TIP . C 3 HOH A 130 130 130 HOH TIP . C 3 HOH A 131 131 131 HOH TIP . C 3 HOH A 132 132 132 HOH TIP . C 3 HOH A 133 133 133 HOH TIP . C 3 HOH A 134 134 134 HOH TIP . C 3 HOH A 135 135 135 HOH TIP . C 3 HOH A 136 136 136 HOH TIP . C 3 HOH A 137 137 137 HOH TIP . C 3 HOH A 138 138 138 HOH TIP . C 3 HOH A 139 139 139 HOH TIP . C 3 HOH A 140 140 140 HOH TIP . C 3 HOH A 141 141 141 HOH TIP . C 3 HOH A 142 142 142 HOH TIP . C 3 HOH A 143 143 143 HOH TIP . C 3 HOH A 144 144 144 HOH TIP . C 3 HOH A 145 145 145 HOH TIP . C 3 HOH A 146 146 146 HOH TIP . C 3 HOH A 147 147 147 HOH TIP . C 3 HOH A 148 148 148 HOH TIP . C 3 HOH A 149 149 149 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 62.917 49.324 220.557 1 20.45 ? N SAH 529 A 1 HETATM 2 C CA SAH . . . B 2 63.382 50.431 221.375 1 20.07 ? CA SAH 529 A 1 HETATM 3 C CB SAH . . . B 2 64.832 50.769 221.01 1 19.94 ? CB SAH 529 A 1 HETATM 4 C CG SAH . . . B 2 65.076 51.045 219.521 1 20 ? CG SAH 529 A 1 HETATM 5 S SD SAH . . . B 2 66.729 51.805 219.357 1 20.36 ? SD SAH 529 A 1 HETATM 6 C C SAH . . . B 2 62.493 51.654 221.182 1 19.82 ? C SAH 529 A 1 HETATM 7 O O SAH . . . B 2 61.585 51.63 220.243 1 19.57 ? O SAH 529 A 1 HETATM 8 O OXT SAH . . . B 2 62.359 52.484 222.176 1 20.93 ? OXT SAH 529 A 1 HETATM 9 C C5' SAH . . . B 2 67.788 50.641 218.455 1 18.27 ? C5' SAH 529 A 1 HETATM 10 C C4' SAH . . . B 2 68.127 49.553 219.44 1 20.82 ? C4' SAH 529 A 1 HETATM 11 O O4' SAH . . . B 2 68.462 48.341 218.709 1 21.6 ? O4' SAH 529 A 1 HETATM 12 C C3' SAH . . . B 2 69.292 49.821 220.396 1 20.61 ? C3' SAH 529 A 1 HETATM 13 O O3' SAH . . . B 2 68.983 49.331 221.704 1 20.91 ? O3' SAH 529 A 1 HETATM 14 C C2' SAH . . . B 2 70.438 49.023 219.769 1 21.23 ? C2' SAH 529 A 1 HETATM 15 O O2' SAH . . . B 2 71.412 48.592 220.715 1 20.21 ? O2' SAH 529 A 1 HETATM 16 C C1' SAH . . . B 2 69.69 47.833 219.173 1 20.47 ? C1' SAH 529 A 1 HETATM 17 N N9 SAH . . . B 2 70.366 47.173 218.06 1 21.86 ? N9 SAH 529 A 1 HETATM 18 C C8 SAH . . . B 2 70.962 47.738 216.955 1 22.69 ? C8 SAH 529 A 1 HETATM 19 N N7 SAH . . . B 2 71.528 46.864 216.156 1 23.41 ? N7 SAH 529 A 1 HETATM 20 C C5 SAH . . . B 2 71.282 45.642 216.77 1 23.36 ? C5 SAH 529 A 1 HETATM 21 C C6 SAH . . . B 2 71.644 44.322 216.433 1 24.88 ? C6 SAH 529 A 1 HETATM 22 N N6 SAH . . . B 2 72.371 44.003 215.365 1 24.73 ? N6 SAH 529 A 1 HETATM 23 N N1 SAH . . . B 2 71.231 43.328 217.251 1 23.71 ? N1 SAH 529 A 1 HETATM 24 C C2 SAH . . . B 2 70.521 43.651 218.339 1 24.59 ? C2 SAH 529 A 1 HETATM 25 N N3 SAH . . . B 2 70.135 44.852 218.771 1 24.53 ? N3 SAH 529 A 1 HETATM 26 C C4 SAH . . . B 2 70.555 45.816 217.933 1 23.16 ? C4 SAH 529 A 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #