data_1F3P # _model_server_result.job_id 1-eP7T7ExOBG6vgMr7d6eQ _model_server_result.datetime_utc '2024-11-16 08:28:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1f3p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 1F3P # _exptl.entry_id 1F3P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1F3P _cell.length_a 98.9 _cell.length_b 98.9 _cell.length_c 170.9 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1F3P _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 328 n n PA O2A NAD sing 329 n n PA O5B NAD sing 330 n n PA O3 NAD sing 331 n n O2A HOA2 NAD sing 332 n n O5B C5B NAD sing 333 n n C5B C4B NAD sing 334 n n C5B H51A NAD sing 335 n n C5B H52A NAD sing 336 n n C4B O4B NAD sing 337 n n C4B C3B NAD sing 338 n n C4B H4B NAD sing 339 n n O4B C1B NAD sing 340 n n C3B O3B NAD sing 341 n n C3B C2B NAD sing 342 n n C3B H3B NAD sing 343 n n O3B HO3A NAD sing 344 n n C2B O2B NAD sing 345 n n C2B C1B NAD sing 346 n n C2B H2B NAD sing 347 n n O2B HO2A NAD sing 348 n n C1B N9A NAD sing 349 n n C1B H1B NAD sing 350 n n N9A C8A NAD sing 351 n y N9A C4A NAD sing 352 n y C8A N7A NAD doub 353 n y C8A H8A NAD sing 354 n n N7A C5A NAD sing 355 n y C5A C6A NAD sing 356 n y C5A C4A NAD doub 357 n y C6A N6A NAD sing 358 n n C6A N1A NAD doub 359 n y N6A H61A NAD sing 360 n n N6A H62A NAD sing 361 n n N1A C2A NAD sing 362 n y C2A N3A NAD doub 363 n y C2A H2A NAD sing 364 n n N3A C4A NAD sing 365 n y O3 PN NAD sing 366 n n PN O1N NAD doub 367 n n PN O2N NAD sing 368 n n PN O5D NAD sing 369 n n O5D C5D NAD sing 370 n n C5D C4D NAD sing 371 n n C5D H51N NAD sing 372 n n C5D H52N NAD sing 373 n n C4D O4D NAD sing 374 n n C4D C3D NAD sing 375 n n C4D H4D NAD sing 376 n n O4D C1D NAD sing 377 n n C3D O3D NAD sing 378 n n C3D C2D NAD sing 379 n n C3D H3D NAD sing 380 n n O3D HO3N NAD sing 381 n n C2D O2D NAD sing 382 n n C2D C1D NAD sing 383 n n C2D H2D NAD sing 384 n n O2D HO2N NAD sing 385 n n C1D N1N NAD sing 386 n n C1D H1D NAD sing 387 n n N1N C2N NAD sing 388 n y N1N C6N NAD doub 389 n y C2N C3N NAD doub 390 n y C2N H2N NAD sing 391 n n C3N C7N NAD sing 392 n n C3N C4N NAD sing 393 n y C7N O7N NAD doub 394 n n C7N N7N NAD sing 395 n n N7N H71N NAD sing 396 n n N7N H72N NAD sing 397 n n C4N C5N NAD doub 398 n y C4N H4N NAD sing 399 n n C5N C6N NAD sing 400 n y C5N H5N NAD sing 401 n n C6N H6N NAD sing 402 n n # _atom_sites.entry_id 1F3P _atom_sites.fract_transf_matrix[1][1] 0.01011 _atom_sites.fract_transf_matrix[1][2] 0.00584 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01168 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00585 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 449 449 FAD FAD . C 3 NAD A 1 500 500 NAD NAD . D 4 HOH A 1 501 1 HOH HOH . D 4 HOH A 2 502 2 HOH HOH . D 4 HOH A 3 503 3 HOH HOH . D 4 HOH A 4 504 4 HOH HOH . D 4 HOH A 5 505 5 HOH HOH . D 4 HOH A 6 506 6 HOH HOH . D 4 HOH A 7 507 7 HOH HOH . D 4 HOH A 8 508 8 HOH HOH . D 4 HOH A 9 509 9 HOH HOH . D 4 HOH A 10 510 10 HOH HOH . D 4 HOH A 11 511 11 HOH HOH . D 4 HOH A 12 512 12 HOH HOH . D 4 HOH A 13 513 13 HOH HOH . D 4 HOH A 14 514 14 HOH HOH . D 4 HOH A 15 515 15 HOH HOH . D 4 HOH A 16 516 16 HOH HOH . D 4 HOH A 17 517 17 HOH HOH . D 4 HOH A 18 518 18 HOH HOH . D 4 HOH A 19 519 19 HOH HOH . D 4 HOH A 20 520 20 HOH HOH . D 4 HOH A 21 521 21 HOH HOH . D 4 HOH A 22 522 22 HOH HOH . D 4 HOH A 23 523 23 HOH HOH . D 4 HOH A 24 524 25 HOH HOH . D 4 HOH A 25 525 26 HOH HOH . D 4 HOH A 26 526 27 HOH HOH . D 4 HOH A 27 527 28 HOH HOH . D 4 HOH A 28 528 29 HOH HOH . D 4 HOH A 29 529 32 HOH HOH . D 4 HOH A 30 530 33 HOH HOH . D 4 HOH A 31 531 34 HOH HOH . D 4 HOH A 32 532 35 HOH HOH . D 4 HOH A 33 533 36 HOH HOH . D 4 HOH A 34 534 37 HOH HOH . D 4 HOH A 35 535 38 HOH HOH . D 4 HOH A 36 536 39 HOH HOH . D 4 HOH A 37 537 40 HOH HOH . D 4 HOH A 38 538 41 HOH HOH . D 4 HOH A 39 539 42 HOH HOH . D 4 HOH A 40 540 43 HOH HOH . D 4 HOH A 41 541 44 HOH HOH . D 4 HOH A 42 542 45 HOH HOH . D 4 HOH A 43 543 46 HOH HOH . D 4 HOH A 44 544 47 HOH HOH . D 4 HOH A 45 545 48 HOH HOH . D 4 HOH A 46 546 49 HOH HOH . D 4 HOH A 47 547 50 HOH HOH . D 4 HOH A 48 548 51 HOH HOH . D 4 HOH A 49 549 52 HOH HOH . D 4 HOH A 50 550 53 HOH HOH . D 4 HOH A 51 551 54 HOH HOH . D 4 HOH A 52 552 55 HOH HOH . D 4 HOH A 53 553 56 HOH HOH . D 4 HOH A 54 554 57 HOH HOH . D 4 HOH A 55 555 58 HOH HOH . D 4 HOH A 56 556 60 HOH HOH . D 4 HOH A 57 557 61 HOH HOH . D 4 HOH A 58 558 62 HOH HOH . D 4 HOH A 59 559 64 HOH HOH . D 4 HOH A 60 560 65 HOH HOH . D 4 HOH A 61 561 67 HOH HOH . D 4 HOH A 62 562 68 HOH HOH . D 4 HOH A 63 563 69 HOH HOH . D 4 HOH A 64 564 70 HOH HOH . D 4 HOH A 65 565 71 HOH HOH . D 4 HOH A 66 566 72 HOH HOH . D 4 HOH A 67 567 73 HOH HOH . D 4 HOH A 68 568 75 HOH HOH . D 4 HOH A 69 569 76 HOH HOH . D 4 HOH A 70 570 77 HOH HOH . D 4 HOH A 71 571 78 HOH HOH . D 4 HOH A 72 572 79 HOH HOH . D 4 HOH A 73 573 80 HOH HOH . D 4 HOH A 74 574 81 HOH HOH . D 4 HOH A 75 575 82 HOH HOH . D 4 HOH A 76 576 83 HOH HOH . D 4 HOH A 77 577 84 HOH HOH . D 4 HOH A 78 578 85 HOH HOH . D 4 HOH A 79 579 86 HOH HOH . D 4 HOH A 80 580 87 HOH HOH . D 4 HOH A 81 581 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 3 72.219 23.282 11.46 1 38.86 ? PA NAD 500 A 1 HETATM 2 O O1A NAD . . . C 3 71.167 24.3 11.343 1 29.54 ? O1A NAD 500 A 1 HETATM 3 O O2A NAD . . . C 3 72.419 22.522 12.778 1 38.58 ? O2A NAD 500 A 1 HETATM 4 O O5B NAD . . . C 3 73.69 23.893 11.186 1 36.2 ? O5B NAD 500 A 1 HETATM 5 C C5B NAD . . . C 3 74.047 24.508 9.906 1 35.79 ? C5B NAD 500 A 1 HETATM 6 C C4B NAD . . . C 3 75.295 25.347 10.143 1 38.4 ? C4B NAD 500 A 1 HETATM 7 O O4B NAD . . . C 3 75.496 25.89 8.778 1 34.86 ? O4B NAD 500 A 1 HETATM 8 C C3B NAD . . . C 3 75.085 26.644 11.017 1 39.01 ? C3B NAD 500 A 1 HETATM 9 O O3B NAD . . . C 3 76.247 26.709 11.997 1 42 ? O3B NAD 500 A 1 HETATM 10 C C2B NAD . . . C 3 75.096 27.844 10.129 1 38.19 ? C2B NAD 500 A 1 HETATM 11 O O2B NAD . . . C 3 75.495 29.056 10.573 1 26.13 ? O2B NAD 500 A 1 HETATM 12 C C1B NAD . . . C 3 75.884 27.243 8.906 1 39.16 ? C1B NAD 500 A 1 HETATM 13 N N9A NAD . . . C 3 75.502 27.804 7.642 1 39.95 ? N9A NAD 500 A 1 HETATM 14 C C8A NAD . . . C 3 74.362 28.328 7.094 1 41.67 ? C8A NAD 500 A 1 HETATM 15 N N7A NAD . . . C 3 74.452 28.734 5.839 1 46.92 ? N7A NAD 500 A 1 HETATM 16 C C5A NAD . . . C 3 75.726 28.484 5.476 1 40.96 ? C5A NAD 500 A 1 HETATM 17 C C6A NAD . . . C 3 76.455 28.706 4.181 1 40.74 ? C6A NAD 500 A 1 HETATM 18 N N6A NAD . . . C 3 75.903 29.225 3.122 1 41.56 ? N6A NAD 500 A 1 HETATM 19 N N1A NAD . . . C 3 77.76 28.298 4.255 1 45.35 ? N1A NAD 500 A 1 HETATM 20 C C2A NAD . . . C 3 78.437 27.754 5.28 1 41.56 ? C2A NAD 500 A 1 HETATM 21 N N3A NAD . . . C 3 77.785 27.522 6.527 1 35.85 ? N3A NAD 500 A 1 HETATM 22 C C4A NAD . . . C 3 76.43 27.908 6.559 1 34.97 ? C4A NAD 500 A 1 HETATM 23 O O3 NAD . . . C 3 72.074 22.182 10.346 1 42.41 ? O3 NAD 500 A 1 HETATM 24 P PN NAD . . . C 3 72.48 20.715 9.933 1 40.78 ? PN NAD 500 A 1 HETATM 25 O O1N NAD . . . C 3 73.668 20.276 10.69 1 42 ? O1N NAD 500 A 1 HETATM 26 O O2N NAD . . . C 3 72.622 20.672 8.435 1 31.2 ? O2N NAD 500 A 1 HETATM 27 O O5D NAD . . . C 3 71.326 19.682 10.408 1 43.7 ? O5D NAD 500 A 1 HETATM 28 C C5D NAD . . . C 3 69.997 19.92 9.762 1 51.13 ? C5D NAD 500 A 1 HETATM 29 C C4D NAD . . . C 3 68.99 18.989 10.403 1 54.89 ? C4D NAD 500 A 1 HETATM 30 O O4D NAD . . . C 3 69.704 17.764 10.912 1 57.19 ? O4D NAD 500 A 1 HETATM 31 C C3D NAD . . . C 3 68.287 19.501 11.696 1 57.44 ? C3D NAD 500 A 1 HETATM 32 O O3D NAD . . . C 3 66.942 18.96 11.755 1 61.69 ? O3D NAD 500 A 1 HETATM 33 C C2D NAD . . . C 3 69.135 19.005 12.862 1 55.8 ? C2D NAD 500 A 1 HETATM 34 O O2D NAD . . . C 3 68.573 19.039 14.147 1 57.89 ? O2D NAD 500 A 1 HETATM 35 C C1D NAD . . . C 3 69.496 17.564 12.371 1 58 ? C1D NAD 500 A 1 HETATM 36 N N1N NAD . . . C 3 70.752 16.957 12.942 1 62.32 ? N1N NAD 500 A 1 HETATM 37 C C2N NAD . . . C 3 70.952 16.93 14.313 1 70.73 ? C2N NAD 500 A 1 HETATM 38 C C3N NAD . . . C 3 72.098 16.389 14.803 1 77 ? C3N NAD 500 A 1 HETATM 39 C C7N NAD . . . C 3 72.302 16.369 16.327 1 81.37 ? C7N NAD 500 A 1 HETATM 40 O O7N NAD . . . C 3 71.512 16.791 17.175 1 84.2 ? O7N NAD 500 A 1 HETATM 41 N N7N NAD . . . C 3 73.541 15.772 16.708 1 81.4 ? N7N NAD 500 A 1 HETATM 42 C C4N NAD . . . C 3 73.161 15.817 13.936 1 74.41 ? C4N NAD 500 A 1 HETATM 43 C C5N NAD . . . C 3 72.857 15.897 12.552 1 69.85 ? C5N NAD 500 A 1 HETATM 44 C C6N NAD . . . C 3 71.738 16.425 12.019 1 63.11 ? C6N NAD 500 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 44 #