data_1F40 # _model_server_result.job_id VApTaoHuvHIOmgh1gmtsKQ _model_server_result.datetime_utc '2024-11-05 00:56:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1f40 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":108}' # _entry.id 1F40 # _exptl.entry_id 1F40 _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 360.447 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-[3-PYRIDYL-1-PROPYL]-1-[3,3-DIMETHYL-1,2-DIOXOPENTYL]-2-PYRROLIDINECARBOXYLATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1F40 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1F40 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H28 N2 O4' _chem_comp.formula_weight 360.447 _chem_comp.id GPI _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-[3-PYRIDYL-1-PROPYL]-1-[3,3-DIMETHYL-1,2-DIOXOPENTYL]-2-PYRROLIDINECARBOXYLATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GPI-1046 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N6 GPI sing 129 n n C2 C3 GPI sing 130 n n C2 C1 GPI sing 131 n n C2 H2 GPI sing 132 n n N6 C5 GPI sing 133 n n N6 C7 GPI sing 134 n n C5 C4 GPI sing 135 n n C5 H51 GPI sing 136 n n C5 H52 GPI sing 137 n n C3 C4 GPI sing 138 n n C3 H31 GPI sing 139 n n C3 H32 GPI sing 140 n n C4 H41 GPI sing 141 n n C4 H42 GPI sing 142 n n C1 O1 GPI doub 143 n n C1 O2 GPI sing 144 n n O2 C14 GPI sing 145 n n C14 C15 GPI sing 146 n n C14 H141 GPI sing 147 n n C14 H142 GPI sing 148 n n C15 C16 GPI sing 149 n n C15 H151 GPI sing 150 n n C15 H152 GPI sing 151 n n C16 C17 GPI sing 152 n n C16 H161 GPI sing 153 n n C16 H162 GPI sing 154 n n N19 C20 GPI doub 155 n y N19 C18 GPI sing 156 n y C20 C21 GPI sing 157 n y C20 H20 GPI sing 158 n n C21 C22 GPI doub 159 n y C21 H21 GPI sing 160 n n C22 C17 GPI sing 161 n y C22 H22 GPI sing 162 n n C17 C18 GPI doub 163 n y C18 H18 GPI sing 164 n n C7 O7 GPI doub 165 n n C7 C8 GPI sing 166 n n C8 O8 GPI doub 167 n n C8 C9 GPI sing 168 n n C9 C12 GPI sing 169 n n C9 C13 GPI sing 170 n n C9 C10 GPI sing 171 n n C12 H121 GPI sing 172 n n C12 H122 GPI sing 173 n n C12 H123 GPI sing 174 n n C13 H131 GPI sing 175 n n C13 H132 GPI sing 176 n n C13 H133 GPI sing 177 n n C10 C11 GPI sing 178 n n C10 H101 GPI sing 179 n n C10 H102 GPI sing 180 n n C11 H111 GPI sing 181 n n C11 H112 GPI sing 182 n n C11 H113 GPI sing 183 n n # _atom_sites.entry_id 1F40 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id GPI _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 108 _pdbx_nonpoly_scheme.auth_seq_num 108 _pdbx_nonpoly_scheme.pdb_mon_id GPI _pdbx_nonpoly_scheme.auth_mon_id GPI _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 GPI . . . B 2 -3.861 1.684 -0.804 1 0 ? C2 GPI 108 A 1 HETATM 2 N N6 GPI . . . B 2 -4.145 3.148 -0.447 1 0 ? N6 GPI 108 A 1 HETATM 3 C C5 GPI . . . B 2 -2.772 3.843 -0.504 1 0 ? C5 GPI 108 A 1 HETATM 4 C C3 GPI . . . B 2 -2.447 1.411 -0.328 1 0 ? C3 GPI 108 A 1 HETATM 5 C C4 GPI . . . B 2 -1.711 2.737 -0.447 1 0 ? C4 GPI 108 A 1 HETATM 6 C C1 GPI . . . B 2 -4.833 0.767 -0.042 1 0 ? C1 GPI 108 A 1 HETATM 7 O O1 GPI . . . B 2 -4.461 0.205 0.991 1 0 ? O1 GPI 108 A 1 HETATM 8 O O2 GPI . . . B 2 -6.1 0.571 -0.516 1 0 ? O2 GPI 108 A 1 HETATM 9 C C14 GPI . . . B 2 -7.038 0.541 0.566 1 0 ? C14 GPI 108 A 1 HETATM 10 C C15 GPI . . . B 2 -8.453 0.808 0.023 1 0 ? C15 GPI 108 A 1 HETATM 11 C C16 GPI . . . B 2 -9.376 -0.361 0.402 1 0 ? C16 GPI 108 A 1 HETATM 12 N N19 GPI . . . B 2 -11.357 1.229 3.295 1 0 ? N19 GPI 108 A 1 HETATM 13 C C20 GPI . . . B 2 -11.083 0.341 4.359 1 0 ? C20 GPI 108 A 1 HETATM 14 C C21 GPI . . . B 2 -10.254 -0.775 4.139 1 0 ? C21 GPI 108 A 1 HETATM 15 C C22 GPI . . . B 2 -9.704 -0.998 2.857 1 0 ? C22 GPI 108 A 1 HETATM 16 C C17 GPI . . . B 2 -9.979 -0.11 1.795 1 0 ? C17 GPI 108 A 1 HETATM 17 C C18 GPI . . . B 2 -10.807 1.007 2.014 1 0 ? C18 GPI 108 A 1 HETATM 18 C C7 GPI . . . B 2 -5.305 3.695 -0.16 1 0 ? C7 GPI 108 A 1 HETATM 19 O O7 GPI . . . B 2 -6.326 3.011 -0.154 1 0 ? O7 GPI 108 A 1 HETATM 20 C C8 GPI . . . B 2 -5.382 5.197 0.173 1 0 ? C8 GPI 108 A 1 HETATM 21 O O8 GPI . . . B 2 -5.069 6.028 -0.677 1 0 ? O8 GPI 108 A 1 HETATM 22 C C9 GPI . . . B 2 -5.85 5.665 1.565 1 0 ? C9 GPI 108 A 1 HETATM 23 C C12 GPI . . . B 2 -5.026 6.892 1.993 1 0 ? C12 GPI 108 A 1 HETATM 24 C C13 GPI . . . B 2 -5.653 4.536 2.593 1 0 ? C13 GPI 108 A 1 HETATM 25 C C10 GPI . . . B 2 -7.339 6.047 1.504 1 0 ? C10 GPI 108 A 1 HETATM 26 C C11 GPI . . . B 2 -7.541 7.16 0.461 1 0 ? C11 GPI 108 A 1 HETATM 27 H H2 GPI . . . B 2 -4.005 1.63 -1.886 1 0 ? H2 GPI 108 A 1 HETATM 28 H H51 GPI . . . B 2 -2.665 4.477 -1.402 1 0 ? H51 GPI 108 A 1 HETATM 29 H H52 GPI . . . B 2 -2.659 4.513 0.369 1 0 ? H52 GPI 108 A 1 HETATM 30 H H31 GPI . . . B 2 -1.964 0.641 -0.958 1 0 ? H31 GPI 108 A 1 HETATM 31 H H32 GPI . . . B 2 -2.443 1.017 0.706 1 0 ? H32 GPI 108 A 1 HETATM 32 H H41 GPI . . . B 2 -1.139 2.739 -1.404 1 0 ? H41 GPI 108 A 1 HETATM 33 H H42 GPI . . . B 2 -0.985 2.897 0.372 1 0 ? H42 GPI 108 A 1 HETATM 34 H H141 GPI . . . B 2 -6.78 1.308 1.296 1 0 ? H141 GPI 108 A 1 HETATM 35 H H142 GPI . . . B 2 -7.013 -0.439 1.042 1 0 ? H142 GPI 108 A 1 HETATM 36 H H151 GPI . . . B 2 -8.415 0.905 -1.061 1 0 ? H151 GPI 108 A 1 HETATM 37 H H152 GPI . . . B 2 -8.84 1.731 0.456 1 0 ? H152 GPI 108 A 1 HETATM 38 H H161 GPI . . . B 2 -8.803 -1.287 0.416 1 0 ? H161 GPI 108 A 1 HETATM 39 H H162 GPI . . . B 2 -10.179 -0.443 -0.331 1 0 ? H162 GPI 108 A 1 HETATM 40 H H20 GPI . . . B 2 -11.508 0.518 5.336 1 0 ? H20 GPI 108 A 1 HETATM 41 H H21 GPI . . . B 2 -10.04 -1.458 4.947 1 0 ? H21 GPI 108 A 1 HETATM 42 H H22 GPI . . . B 2 -9.067 -1.854 2.69 1 0 ? H22 GPI 108 A 1 HETATM 43 H H18 GPI . . . B 2 -11.021 1.69 1.206 1 0 ? H18 GPI 108 A 1 HETATM 44 H H121 GPI . . . B 2 -4.103 6.91 1.456 1 0 ? H121 GPI 108 A 1 HETATM 45 H H122 GPI . . . B 2 -5.579 7.782 1.759 1 0 ? H122 GPI 108 A 1 HETATM 46 H H123 GPI . . . B 2 -4.833 6.852 3.045 1 0 ? H123 GPI 108 A 1 HETATM 47 H H131 GPI . . . B 2 -6.315 3.705 2.356 1 0 ? H131 GPI 108 A 1 HETATM 48 H H132 GPI . . . B 2 -4.619 4.188 2.546 1 0 ? H132 GPI 108 A 1 HETATM 49 H H133 GPI . . . B 2 -5.873 4.905 3.596 1 0 ? H133 GPI 108 A 1 HETATM 50 H H101 GPI . . . B 2 -7.664 6.402 2.482 1 0 ? H101 GPI 108 A 1 HETATM 51 H H102 GPI . . . B 2 -7.928 5.174 1.222 1 0 ? H102 GPI 108 A 1 HETATM 52 H H111 GPI . . . B 2 -8.157 6.801 -0.334 1 0 ? H111 GPI 108 A 1 HETATM 53 H H112 GPI . . . B 2 -8.033 7.992 0.93 1 0 ? H112 GPI 108 A 1 HETATM 54 H H113 GPI . . . B 2 -6.595 7.471 0.074 1 0 ? H113 GPI 108 A 1 # _model_server_stats.io_time_ms 108 _model_server_stats.parse_time_ms 103 _model_server_stats.create_model_time_ms 159 _model_server_stats.query_time_ms 3088 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 54 #