data_1F4R # _model_server_result.job_id XkGOqq-6TC4lGoKRJOOS-w _model_server_result.datetime_utc '2024-12-23 06:55:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1f4r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 1F4R # _exptl.entry_id 1F4R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1F4R _cell.length_a 42.1 _cell.length_b 57.3 _cell.length_c 125.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1F4R _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DG 6 D DG 6 1_555 A P EDA 7 D EDA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.599 ? covale ? covale2 A O3' EDA 7 D EDA 7 1_555 A P DT 8 D DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.612 ? metalc ? metalc1 G O HOH . A HOH 42 1_555 D NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc2 C O MET 70 A MET 149 1_555 D NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc3 C OG SER 92 A SER 171 1_555 D NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc4 C O SER 93 A SER 172 1_555 D NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc5 C O GLY 95 A GLY 174 1_555 D NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc6 C O ALA 98 A ALA 177 1_555 D NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? hydrog WATSON-CRICK hydrog1 A N1 DG 1 D DG 1 1_555 B N3 DC 12 E DC 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 1 D DG 1 1_555 B O2 DC 12 E DC 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 1 D DG 1 1_555 B N4 DC 12 E DC 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DA 2 D DA 2 1_555 B N3 DT 11 E DT 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N6 DA 2 D DA 2 1_555 B O4 DT 11 E DT 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 DC 3 D DC 3 1_555 B N1 DG 10 E DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N4 DC 3 D DC 3 1_555 B O6 DG 10 E DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O2 DC 3 D DC 3 1_555 B N2 DG 10 E DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N1 DA 4 D DA 4 1_555 B N3 DT 9 E DT 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N6 DA 4 D DA 4 1_555 B O4 DT 9 E DT 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 DT 5 D DT 5 1_555 B N1 DA 8 E DA 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O4 DT 5 D DT 5 1_555 B N6 DA 8 E DA 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 DG 6 D DG 6 1_555 B N3 DC 7 E DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N2 DG 6 D DG 6 1_555 B O2 DC 7 E DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O6 DG 6 D DG 6 1_555 B N4 DC 7 E DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 DT 8 D DT 8 1_555 B N1 DA 5 E DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O4 DT 8 D DT 8 1_555 B N6 DA 5 E DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N3 DT 9 D DT 9 1_555 B N1 DA 4 E DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O4 DT 9 D DT 9 1_555 B N6 DA 4 E DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N1 DG 10 D DG 10 1_555 B N3 DC 3 E DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N2 DG 10 D DG 10 1_555 B O2 DC 3 E DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A O6 DG 10 D DG 10 1_555 B N4 DC 3 E DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N3 DC 11 D DC 11 1_555 B N1 DG 2 E DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N4 DC 11 D DC 11 1_555 B O6 DG 2 E DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A O2 DC 11 D DC 11 1_555 B N2 DG 2 E DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1F4R _atom_sites.fract_transf_matrix[1][1] 0.023753 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017452 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007968 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NA A 1 1001 1001 NA NA . E 5 HOH D 1 14 3 HOH HOH . E 5 HOH D 2 15 20 HOH HOH . E 5 HOH D 3 16 31 HOH HOH . E 5 HOH D 4 17 34 HOH HOH . E 5 HOH D 5 18 36 HOH HOH . F 5 HOH E 1 27 12 HOH HOH . F 5 HOH E 2 28 22 HOH HOH . F 5 HOH E 3 29 28 HOH HOH . F 5 HOH E 4 30 47 HOH HOH . G 5 HOH A 1 1 1 HOH HOH . G 5 HOH A 2 2 2 HOH HOH . G 5 HOH A 3 4 4 HOH HOH . G 5 HOH A 4 5 5 HOH HOH . G 5 HOH A 5 6 6 HOH HOH . G 5 HOH A 6 7 7 HOH HOH . G 5 HOH A 7 8 8 HOH HOH . G 5 HOH A 8 9 9 HOH HOH . G 5 HOH A 9 10 10 HOH HOH . G 5 HOH A 10 11 11 HOH HOH . G 5 HOH A 11 13 13 HOH HOH . G 5 HOH A 12 14 14 HOH HOH . G 5 HOH A 13 15 15 HOH HOH . G 5 HOH A 14 16 16 HOH HOH . G 5 HOH A 15 17 17 HOH HOH . G 5 HOH A 16 18 18 HOH HOH . G 5 HOH A 17 19 19 HOH HOH . G 5 HOH A 18 21 21 HOH HOH . G 5 HOH A 19 23 23 HOH HOH . G 5 HOH A 20 24 24 HOH HOH . G 5 HOH A 21 25 25 HOH HOH . G 5 HOH A 22 26 26 HOH HOH . G 5 HOH A 23 27 27 HOH HOH . G 5 HOH A 24 29 29 HOH HOH . G 5 HOH A 25 30 30 HOH HOH . G 5 HOH A 26 32 32 HOH HOH . G 5 HOH A 27 33 33 HOH HOH . G 5 HOH A 28 35 35 HOH HOH . G 5 HOH A 29 37 37 HOH HOH . G 5 HOH A 30 38 38 HOH HOH . G 5 HOH A 31 39 39 HOH HOH . G 5 HOH A 32 40 40 HOH HOH . G 5 HOH A 33 41 41 HOH HOH . G 5 HOH A 34 42 42 HOH HOH . G 5 HOH A 35 43 43 HOH HOH . G 5 HOH A 36 44 44 HOH HOH . G 5 HOH A 37 45 45 HOH HOH . G 5 HOH A 38 46 46 HOH HOH . G 5 HOH A 39 48 48 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -28.592 _atom_site.Cartn_y 48.184 _atom_site.Cartn_z 17.129 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.34 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1001 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #