data_1F4U # _model_server_result.job_id uUx3LqlC00tyWWoELcF28g _model_server_result.datetime_utc '2024-11-24 16:34:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1f4u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":410}' # _entry.id 1F4U # _exptl.entry_id 1F4U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.35 _cell.angle_gamma 90 _cell.entry_id 1F4U _cell.length_a 76.969 _cell.length_b 70.258 _cell.length_c 107.538 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1F4U _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 317 A CYS 317 1_555 D FE HEM . A HEM 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc2 D FE HEM . A HEM 410 1_555 E N1 IMD . A IMD 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc3 B SG CYS 317 B CYS 317 1_555 G FE HEM . B HEM 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc4 G FE HEM . B HEM 410 1_555 H N1 IMD . B IMD 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 1F4U _atom_sites.fract_transf_matrix[1][1] 0.012992 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002844 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014233 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009519 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 369 2 SO4 SO4 . D 3 HEM A 1 410 410 HEM HEM . E 4 IMD A 1 411 411 IMD IMI . F 2 SO4 B 1 369 1 SO4 SO4 . G 3 HEM B 1 410 410 HEM HEM . H 4 IMD B 1 411 411 IMD IMI . I 5 HOH A 1 412 3 HOH HOH . I 5 HOH A 2 413 4 HOH HOH . I 5 HOH A 3 414 5 HOH HOH . I 5 HOH A 4 415 6 HOH HOH . I 5 HOH A 5 416 7 HOH HOH . I 5 HOH A 6 417 8 HOH HOH . I 5 HOH A 7 418 9 HOH HOH . I 5 HOH A 8 419 10 HOH HOH . I 5 HOH A 9 420 11 HOH HOH . I 5 HOH A 10 421 12 HOH HOH . I 5 HOH A 11 422 13 HOH HOH . I 5 HOH A 12 423 14 HOH HOH . J 5 HOH B 1 412 15 HOH HOH . J 5 HOH B 2 413 16 HOH HOH . J 5 HOH B 3 414 17 HOH HOH . J 5 HOH B 4 415 18 HOH HOH . J 5 HOH B 5 416 19 HOH HOH . J 5 HOH B 6 417 20 HOH HOH . J 5 HOH B 7 418 21 HOH HOH . J 5 HOH B 8 419 22 HOH HOH . J 5 HOH B 9 420 23 HOH HOH . J 5 HOH B 10 421 24 HOH HOH . J 5 HOH B 11 422 25 HOH HOH . J 5 HOH B 12 423 26 HOH HOH . J 5 HOH B 13 424 27 HOH HOH . J 5 HOH B 14 425 28 HOH HOH . J 5 HOH B 15 426 29 HOH HOH . J 5 HOH B 16 427 30 HOH HOH . J 5 HOH B 17 428 31 HOH HOH . J 5 HOH B 18 429 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . D 3 12.161 -1.097 43.427 1 29.73 ? CHA HEM 410 A 1 HETATM 2 C CHB HEM . . . D 3 10.84 3.303 45.156 1 24.68 ? CHB HEM 410 A 1 HETATM 3 C CHC HEM . . . D 3 7.506 1.25 47.971 1 29.55 ? CHC HEM 410 A 1 HETATM 4 C CHD HEM . . . D 3 9.284 -3.109 46.837 1 30.94 ? CHD HEM 410 A 1 HETATM 5 C C1A HEM . . . D 3 12.033 0.322 43.585 1 28.27 ? C1A HEM 410 A 1 HETATM 6 C C2A HEM . . . D 3 12.793 1.344 42.839 1 25.27 ? C2A HEM 410 A 1 HETATM 7 C C3A HEM . . . D 3 12.426 2.558 43.388 1 24.95 ? C3A HEM 410 A 1 HETATM 8 C C4A HEM . . . D 3 11.51 2.285 44.48 1 24.95 ? C4A HEM 410 A 1 HETATM 9 C CMA HEM . . . D 3 12.8 3.972 42.937 1 16.57 ? CMA HEM 410 A 1 HETATM 10 C CAA HEM . . . D 3 13.791 1.163 41.701 1 27.95 ? CAA HEM 410 A 1 HETATM 11 C CBA HEM . . . D 3 15.22 0.656 41.916 1 30.03 ? CBA HEM 410 A 1 HETATM 12 C CGA HEM . . . D 3 16.063 0.712 40.636 1 37.53 ? CGA HEM 410 A 1 HETATM 13 O O1A HEM . . . D 3 15.479 0.802 39.525 1 44.16 ? O1A HEM 410 A 1 HETATM 14 O O2A HEM . . . D 3 17.308 0.66 40.728 1 31.95 ? O2A HEM 410 A 1 HETATM 15 C C1B HEM . . . D 3 9.826 3.115 46.08 1 27.36 ? C1B HEM 410 A 1 HETATM 16 C C2B HEM . . . D 3 9.08 4.183 46.757 1 25.03 ? C2B HEM 410 A 1 HETATM 17 C C3B HEM . . . D 3 8.178 3.603 47.556 1 26.53 ? C3B HEM 410 A 1 HETATM 18 C C4B HEM . . . D 3 8.322 2.181 47.348 1 30.4 ? C4B HEM 410 A 1 HETATM 19 C CMB HEM . . . D 3 9.263 5.672 46.601 1 23.76 ? CMB HEM 410 A 1 HETATM 20 C CAB HEM . . . D 3 7.333 4.189 48.476 1 30.01 ? CAB HEM 410 A 1 HETATM 21 C CBB HEM . . . D 3 6.55 5.397 48.282 1 33.45 ? CBB HEM 410 A 1 HETATM 22 C C1C HEM . . . D 3 7.672 -0.113 47.849 1 31.57 ? C1C HEM 410 A 1 HETATM 23 C C2C HEM . . . D 3 6.842 -1.072 48.596 1 32.4 ? C2C HEM 410 A 1 HETATM 24 C C3C HEM . . . D 3 7.326 -2.297 48.29 1 32.4 ? C3C HEM 410 A 1 HETATM 25 C C4C HEM . . . D 3 8.495 -2.087 47.405 1 33.57 ? C4C HEM 410 A 1 HETATM 26 C CMC HEM . . . D 3 5.576 -0.761 49.428 1 26.37 ? CMC HEM 410 A 1 HETATM 27 C CAC HEM . . . D 3 6.576 -3.44 48.499 1 35.18 ? CAC HEM 410 A 1 HETATM 28 C CBC HEM . . . D 3 7.107 -4.747 48.805 1 43.06 ? CBC HEM 410 A 1 HETATM 29 C C1D HEM . . . D 3 10.27 -2.941 45.854 1 30.21 ? C1D HEM 410 A 1 HETATM 30 C C2D HEM . . . D 3 10.861 -4.064 45.15 1 29.59 ? C2D HEM 410 A 1 HETATM 31 C C3D HEM . . . D 3 11.623 -3.551 44.159 1 31.15 ? C3D HEM 410 A 1 HETATM 32 C C4D HEM . . . D 3 11.514 -2.061 44.253 1 30.75 ? C4D HEM 410 A 1 HETATM 33 C CMD HEM . . . D 3 10.716 -5.536 45.494 1 25.17 ? CMD HEM 410 A 1 HETATM 34 C CAD HEM . . . D 3 12.396 -4.419 43.166 1 34.77 ? CAD HEM 410 A 1 HETATM 35 C CBD HEM . . . D 3 11.921 -4.215 41.74 1 38.14 ? CBD HEM 410 A 1 HETATM 36 C CGD HEM . . . D 3 12.717 -5.01 40.731 1 39.55 ? CGD HEM 410 A 1 HETATM 37 O O1D HEM . . . D 3 13.957 -5.091 40.867 1 37.28 ? O1D HEM 410 A 1 HETATM 38 O O2D HEM . . . D 3 12.099 -5.535 39.784 1 42.63 ? O2D HEM 410 A 1 HETATM 39 N NA HEM . . . D 3 11.254 0.925 44.592 1 24.53 ? NA HEM 410 A 1 HETATM 40 N NB HEM . . . D 3 9.365 1.872 46.459 1 27.42 ? NB HEM 410 A 1 HETATM 41 N NC HEM . . . D 3 8.665 -0.729 47.093 1 28.43 ? NC HEM 410 A 1 HETATM 42 N ND HEM . . . D 3 10.657 -1.71 45.304 1 27.22 ? ND HEM 410 A 1 HETATM 43 FE FE HEM . . . D 3 10.02 0.081 45.85 1 34.27 ? FE HEM 410 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #