data_1F4U # _model_server_result.job_id YulI_DHFlg2J6uMUtibVpw _model_server_result.datetime_utc '2024-11-24 16:53:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1f4u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":411}' # _entry.id 1F4U # _exptl.entry_id 1F4U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.35 _cell.angle_gamma 90 _cell.entry_id 1F4U _cell.length_a 76.969 _cell.length_b 70.258 _cell.length_c 107.538 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1F4U _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 317 A CYS 317 1_555 D FE HEM . A HEM 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc2 D FE HEM . A HEM 410 1_555 E N1 IMD . A IMD 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc3 B SG CYS 317 B CYS 317 1_555 G FE HEM . B HEM 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc4 G FE HEM . B HEM 410 1_555 H N1 IMD . B IMD 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 255 n y N1 C5 IMD sing 256 n y N1 HN1 IMD sing 257 n n C2 N3 IMD doub 258 n y C2 H2 IMD sing 259 n n N3 C4 IMD sing 260 n y N3 HN3 IMD sing 261 n n C4 C5 IMD doub 262 n y C4 H4 IMD sing 263 n n C5 H5 IMD sing 264 n n # _atom_sites.entry_id 1F4U _atom_sites.fract_transf_matrix[1][1] 0.012992 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002844 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014233 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009519 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 369 2 SO4 SO4 . D 3 HEM A 1 410 410 HEM HEM . E 4 IMD A 1 411 411 IMD IMI . F 2 SO4 B 1 369 1 SO4 SO4 . G 3 HEM B 1 410 410 HEM HEM . H 4 IMD B 1 411 411 IMD IMI . I 5 HOH A 1 412 3 HOH HOH . I 5 HOH A 2 413 4 HOH HOH . I 5 HOH A 3 414 5 HOH HOH . I 5 HOH A 4 415 6 HOH HOH . I 5 HOH A 5 416 7 HOH HOH . I 5 HOH A 6 417 8 HOH HOH . I 5 HOH A 7 418 9 HOH HOH . I 5 HOH A 8 419 10 HOH HOH . I 5 HOH A 9 420 11 HOH HOH . I 5 HOH A 10 421 12 HOH HOH . I 5 HOH A 11 422 13 HOH HOH . I 5 HOH A 12 423 14 HOH HOH . J 5 HOH B 1 412 15 HOH HOH . J 5 HOH B 2 413 16 HOH HOH . J 5 HOH B 3 414 17 HOH HOH . J 5 HOH B 4 415 18 HOH HOH . J 5 HOH B 5 416 19 HOH HOH . J 5 HOH B 6 417 20 HOH HOH . J 5 HOH B 7 418 21 HOH HOH . J 5 HOH B 8 419 22 HOH HOH . J 5 HOH B 9 420 23 HOH HOH . J 5 HOH B 10 421 24 HOH HOH . J 5 HOH B 11 422 25 HOH HOH . J 5 HOH B 12 423 26 HOH HOH . J 5 HOH B 13 424 27 HOH HOH . J 5 HOH B 14 425 28 HOH HOH . J 5 HOH B 15 426 29 HOH HOH . J 5 HOH B 16 427 30 HOH HOH . J 5 HOH B 17 428 31 HOH HOH . J 5 HOH B 18 429 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . H 4 -4.158 36.611 15.596 1 37.08 ? N1 IMD 411 B 1 HETATM 2 C C2 IMD . . . H 4 -5.409 36.187 15.282 1 34.6 ? C2 IMD 411 B 1 HETATM 3 N N3 IMD . . . H 4 -5.677 35.863 13.994 1 36.49 ? N3 IMD 411 B 1 HETATM 4 C C4 IMD . . . H 4 -4.443 36.112 13.4 1 35.6 ? C4 IMD 411 B 1 HETATM 5 C C5 IMD . . . H 4 -3.535 36.559 14.356 1 33.66 ? C5 IMD 411 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 754 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #