data_1F4X
#
_model_server_result.job_id            L_OwFIoR1Xvnf84Qz3BAMw 
_model_server_result.datetime_utc      '2024-10-12 15:30:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1f4x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    1F4X 
#
_exptl.entry_id    1F4X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              293.314 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'methyl 4,6-dideoxy-4-{[(2R)-2,4-dihydroxybutanoyl]amino}-2-O-methyl-alpha-D-mannopyranoside' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.57 
_cell.angle_gamma         90 
_cell.entry_id            1F4X 
_cell.length_a            45.57 
_cell.length_b            113.09 
_cell.length_c            46.24 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1F4X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 L CYS 22 1_555 A SG CYS 90 L CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf2 A SG CYS 137 L CYS 137 1_555 A SG CYS 196 L CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf4 B SG CYS 144 H CYS 144 1_555 B SG CYS 199 H CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
#
_chem_comp.formula           'C12 H23 N O7' 
_chem_comp.formula_weight    293.314 
_chem_comp.id                MGS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'methyl 4,6-dideoxy-4-{[(2R)-2,4-dihydroxybutanoyl]amino}-2-O-methyl-alpha-D-mannopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     '1,2-O-DIMETHYL-4-[2,4-DIHYDROXY-BUTYRAMIDO]-4,6-DIDEOXY-ALPHA-D-MANNOPYRANOSIDE;methyl 4,6-dideoxy-4-{[(2R)-2,4-dihydroxybutanoyl]amino}-2-O-methyl-alpha-D-mannoside;methyl 4,6-dideoxy-4-{[(2R)-2,4-dihydroxybutanoyl]amino}-2-O-methyl-D-mannoside;methyl 4,6-dideoxy-4-{[(2R)-2,4-dihydroxybutanoyl]amino}-2-O-methyl-mannoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 MGS sing 237 n n 
C1 C2 MGS sing 238 n n 
C1 O5 MGS sing 239 n n 
C1 H1 MGS sing 240 n n 
O1 C7 MGS sing 241 n n 
C7 HC71 MGS sing 242 n n 
C7 HC72 MGS sing 243 n n 
C7 HC73 MGS sing 244 n n 
C2 O2 MGS sing 245 n n 
C2 C3 MGS sing 246 n n 
C2 H2 MGS sing 247 n n 
O2 C8 MGS sing 248 n n 
C8 HC81 MGS sing 249 n n 
C8 HC82 MGS sing 250 n n 
C8 HC83 MGS sing 251 n n 
C3 O3 MGS sing 252 n n 
C3 C4 MGS sing 253 n n 
C3 H3 MGS sing 254 n n 
O3 HO3 MGS sing 255 n n 
C4 N4 MGS sing 256 n n 
C4 C5 MGS sing 257 n n 
C4 H4 MGS sing 258 n n 
N4 C9 MGS sing 259 n n 
N4 HN4 MGS sing 260 n n 
C9 O9 MGS doub 261 n n 
C9 C10 MGS sing 262 n n 
C5 O5 MGS sing 263 n n 
C5 C6 MGS sing 264 n n 
C5 H5 MGS sing 265 n n 
C6 H61 MGS sing 266 n n 
C6 H62 MGS sing 267 n n 
C6 HC63 MGS sing 268 n n 
C12 O12 MGS sing 269 n n 
C12 C11 MGS sing 270 n n 
C12 H121 MGS sing 271 n n 
C12 H122 MGS sing 272 n n 
O12 HO12 MGS sing 273 n n 
C11 C10 MGS sing 274 n n 
C11 H111 MGS sing 275 n n 
C11 H112 MGS sing 276 n n 
C10 O10 MGS sing 277 n n 
C10 HC10 MGS sing 278 n n 
O10 HO10 MGS sing 279 n n 
#
_atom_sites.entry_id                     1F4X 
_atom_sites.fract_transf_matrix[1][1]    0.021944 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004095 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008843 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MGS H 1 301 1 MGS PER . 
D 4 HOH L 1 211 1 HOH HOH . 
D 4 HOH L 2 212 2 HOH HOH . 
D 4 HOH L 3 213 4 HOH HOH . 
D 4 HOH L 4 214 5 HOH HOH . 
D 4 HOH L 5 215 8 HOH HOH . 
D 4 HOH L 6 216 11 HOH HOH . 
D 4 HOH L 7 217 12 HOH HOH . 
D 4 HOH L 8 218 13 HOH HOH . 
D 4 HOH L 9 219 14 HOH HOH . 
D 4 HOH L 10 220 15 HOH HOH . 
D 4 HOH L 11 221 17 HOH HOH . 
D 4 HOH L 12 222 18 HOH HOH . 
D 4 HOH L 13 223 19 HOH HOH . 
D 4 HOH L 14 224 20 HOH HOH . 
D 4 HOH L 15 225 22 HOH HOH . 
D 4 HOH L 16 226 23 HOH HOH . 
D 4 HOH L 17 227 24 HOH HOH . 
D 4 HOH L 18 228 27 HOH HOH . 
D 4 HOH L 19 229 34 HOH HOH . 
D 4 HOH L 20 230 35 HOH HOH . 
D 4 HOH L 21 231 36 HOH HOH . 
D 4 HOH L 22 232 37 HOH HOH . 
D 4 HOH L 23 233 39 HOH HOH . 
D 4 HOH L 24 234 41 HOH HOH . 
D 4 HOH L 25 235 43 HOH HOH . 
D 4 HOH L 26 236 44 HOH HOH . 
D 4 HOH L 27 237 45 HOH HOH . 
D 4 HOH L 28 238 46 HOH HOH . 
D 4 HOH L 29 239 47 HOH HOH . 
D 4 HOH L 30 240 48 HOH HOH . 
D 4 HOH L 31 241 50 HOH HOH . 
D 4 HOH L 32 242 52 HOH HOH . 
D 4 HOH L 33 243 57 HOH HOH . 
E 4 HOH H 1 302 3 HOH HOH . 
E 4 HOH H 2 303 6 HOH HOH . 
E 4 HOH H 3 304 7 HOH HOH . 
E 4 HOH H 4 305 9 HOH HOH . 
E 4 HOH H 5 306 10 HOH HOH . 
E 4 HOH H 6 307 16 HOH HOH . 
E 4 HOH H 7 308 21 HOH HOH . 
E 4 HOH H 8 309 25 HOH HOH . 
E 4 HOH H 9 310 26 HOH HOH . 
E 4 HOH H 10 311 28 HOH HOH . 
E 4 HOH H 11 312 29 HOH HOH . 
E 4 HOH H 12 313 30 HOH HOH . 
E 4 HOH H 13 314 31 HOH HOH . 
E 4 HOH H 14 315 32 HOH HOH . 
E 4 HOH H 15 316 33 HOH HOH . 
E 4 HOH H 16 317 38 HOH HOH . 
E 4 HOH H 17 318 40 HOH HOH . 
E 4 HOH H 18 319 42 HOH HOH . 
E 4 HOH H 19 320 49 HOH HOH . 
E 4 HOH H 20 321 51 HOH HOH . 
E 4 HOH H 21 322 53 HOH HOH . 
E 4 HOH H 22 323 54 HOH HOH . 
E 4 HOH H 23 324 55 HOH HOH . 
E 4 HOH H 24 325 56 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MGS . . . C 3 -7.807 -21.735 18.311 1 41.63 ? C1 MGS 301 H 1 
HETATM 2 O O1 MGS . . . C 3 -8.347 -21.812 19.604 1 42.79 ? O1 MGS 301 H 1 
HETATM 3 C C7 MGS . . . C 3 -8.254 -23.153 20.144 1 43.23 ? C7 MGS 301 H 1 
HETATM 4 C C2 MGS . . . C 3 -8.233 -20.447 17.63 1 42.28 ? C2 MGS 301 H 1 
HETATM 5 O O2 MGS . . . C 3 -7.569 -20.27 16.369 1 42.13 ? O2 MGS 301 H 1 
HETATM 6 C C8 MGS . . . C 3 -6.185 -19.998 16.649 1 42.77 ? C8 MGS 301 H 1 
HETATM 7 C C3 MGS . . . C 3 -9.753 -20.431 17.362 1 42.06 ? C3 MGS 301 H 1 
HETATM 8 O O3 MGS . . . C 3 -10.082 -19.301 16.518 1 41.35 ? O3 MGS 301 H 1 
HETATM 9 C C4 MGS . . . C 3 -10.111 -21.719 16.625 1 41.21 ? C4 MGS 301 H 1 
HETATM 10 N N4 MGS . . . C 3 -11.586 -21.905 16.402 1 40.93 ? N4 MGS 301 H 1 
HETATM 11 C C9 MGS . . . C 3 -11.89 -21.668 15.141 1 42.72 ? C9 MGS 301 H 1 
HETATM 12 O O9 MGS . . . C 3 -10.945 -21.386 14.422 1 44.41 ? O9 MGS 301 H 1 
HETATM 13 C C5 MGS . . . C 3 -9.541 -22.981 17.283 1 41.36 ? C5 MGS 301 H 1 
HETATM 14 O O5 MGS . . . C 3 -8.093 -22.895 17.525 1 41.06 ? O5 MGS 301 H 1 
HETATM 15 C C6 MGS . . . C 3 -9.851 -24.236 16.434 1 38.33 ? C6 MGS 301 H 1 
HETATM 16 C C12 MGS . . . C 3 -15.128 -23.014 13.698 1 45.74 ? C12 MGS 301 H 1 
HETATM 17 O O12 MGS . . . C 3 -16.024 -22.906 14.807 1 46.42 ? O12 MGS 301 H 1 
HETATM 18 C C11 MGS . . . C 3 -13.846 -23.038 14.439 1 45.71 ? C11 MGS 301 H 1 
HETATM 19 C C10 MGS . . . C 3 -13.131 -21.691 14.241 1 44.98 ? C10 MGS 301 H 1 
HETATM 20 O O10 MGS . . . C 3 -13.857 -20.494 14.214 1 45.24 ? O10 MGS 301 H 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           20 
#