data_1F57 # _model_server_result.job_id WRcPA8VUvYs9WPyGG59_3A _model_server_result.datetime_utc '2024-10-18 15:22:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1f57 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":308}' # _entry.id 1F57 # _exptl.entry_id 1F57 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 121.158 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-CYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.62 _cell.angle_gamma 90 _cell.entry_id 1F57 _cell.length_a 44.389 _cell.length_b 57.712 _cell.length_c 58.193 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1F57 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 138 A CYS 138 1_555 A SG CYS 161 A CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc1 A ND1 HIS 69 A HIS 69 1_555 B ZN ZN . A ZN 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc2 A OE2 GLU 72 A GLU 72 1_555 B ZN ZN . A ZN 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc3 A OE1 GLU 72 A GLU 72 1_555 B ZN ZN . A ZN 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc4 A ND1 HIS 196 A HIS 196 1_555 B ZN ZN . A ZN 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc5 C SG DCY . A DCY 308 1_555 B ZN ZN . A ZN 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? # _chem_comp.formula 'C3 H7 N O2 S' _chem_comp.formula_weight 121.158 _chem_comp.id DCY _chem_comp.mon_nstd_flag . _chem_comp.name D-CYSTEINE _chem_comp.type 'd-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA DCY sing 83 n n N H DCY sing 84 n n N H2 DCY sing 85 n n CA C DCY sing 86 n n CA CB DCY sing 87 n n CA HA DCY sing 88 n n C O DCY doub 89 n n C OXT DCY sing 90 n n CB SG DCY sing 91 n n CB HB2 DCY sing 92 n n CB HB3 DCY sing 93 n n SG HG DCY sing 94 n n OXT HXT DCY sing 95 n n # _atom_sites.entry_id 1F57 _atom_sites.fract_transf_matrix[1][1] 0.022528 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004635 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017327 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017544 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 310 309 ZN ZNI . C 3 DCY A 1 308 308 DCY DCS . D 4 HOH A 1 401 401 HOH HOH . D 4 HOH A 2 402 402 HOH HOH . D 4 HOH A 3 403 403 HOH HOH . D 4 HOH A 4 404 404 HOH HOH . D 4 HOH A 5 405 405 HOH HOH . D 4 HOH A 6 406 406 HOH HOH . D 4 HOH A 7 407 407 HOH HOH . D 4 HOH A 8 408 408 HOH HOH . D 4 HOH A 9 409 409 HOH HOH . D 4 HOH A 10 411 411 HOH HOH . D 4 HOH A 11 412 412 HOH HOH . D 4 HOH A 12 413 413 HOH HOH . D 4 HOH A 13 414 414 HOH HOH . D 4 HOH A 14 415 415 HOH HOH . D 4 HOH A 15 416 416 HOH HOH . D 4 HOH A 16 417 417 HOH HOH . D 4 HOH A 17 418 418 HOH HOH . D 4 HOH A 18 419 419 HOH HOH . D 4 HOH A 19 420 420 HOH HOH . D 4 HOH A 20 421 421 HOH HOH . D 4 HOH A 21 422 422 HOH HOH . D 4 HOH A 22 423 423 HOH HOH . D 4 HOH A 23 424 424 HOH HOH . D 4 HOH A 24 425 425 HOH HOH . D 4 HOH A 25 426 426 HOH HOH . D 4 HOH A 26 427 427 HOH HOH . D 4 HOH A 27 428 428 HOH HOH . D 4 HOH A 28 429 429 HOH HOH . D 4 HOH A 29 430 430 HOH HOH . D 4 HOH A 30 431 431 HOH HOH . D 4 HOH A 31 432 432 HOH HOH . D 4 HOH A 32 433 433 HOH HOH . D 4 HOH A 33 434 434 HOH HOH . D 4 HOH A 34 435 435 HOH HOH . D 4 HOH A 35 436 436 HOH HOH . D 4 HOH A 36 437 437 HOH HOH . D 4 HOH A 37 438 438 HOH HOH . D 4 HOH A 38 440 440 HOH HOH . D 4 HOH A 39 441 441 HOH HOH . D 4 HOH A 40 442 442 HOH HOH . D 4 HOH A 41 443 443 HOH HOH . D 4 HOH A 42 444 444 HOH HOH . D 4 HOH A 43 445 445 HOH HOH . D 4 HOH A 44 446 446 HOH HOH . D 4 HOH A 45 448 448 HOH HOH . D 4 HOH A 46 449 449 HOH HOH . D 4 HOH A 47 450 450 HOH HOH . D 4 HOH A 48 451 451 HOH HOH . D 4 HOH A 49 452 452 HOH HOH . D 4 HOH A 50 453 453 HOH HOH . D 4 HOH A 51 454 454 HOH HOH . D 4 HOH A 52 456 456 HOH HOH . D 4 HOH A 53 457 457 HOH HOH . D 4 HOH A 54 458 458 HOH HOH . D 4 HOH A 55 459 459 HOH HOH . D 4 HOH A 56 460 460 HOH HOH . D 4 HOH A 57 461 461 HOH HOH . D 4 HOH A 58 462 462 HOH HOH . D 4 HOH A 59 463 463 HOH HOH . D 4 HOH A 60 465 465 HOH HOH . D 4 HOH A 61 466 466 HOH HOH . D 4 HOH A 62 467 467 HOH HOH . D 4 HOH A 63 468 468 HOH HOH . D 4 HOH A 64 469 469 HOH HOH . D 4 HOH A 65 470 470 HOH HOH . D 4 HOH A 66 471 471 HOH HOH . D 4 HOH A 67 472 472 HOH HOH . D 4 HOH A 68 473 473 HOH HOH . D 4 HOH A 69 474 474 HOH HOH . D 4 HOH A 70 476 476 HOH HOH . D 4 HOH A 71 477 477 HOH HOH . D 4 HOH A 72 478 478 HOH HOH . D 4 HOH A 73 479 479 HOH HOH . D 4 HOH A 74 480 480 HOH HOH . D 4 HOH A 75 481 481 HOH HOH . D 4 HOH A 76 483 483 HOH HOH . D 4 HOH A 77 485 485 HOH HOH . D 4 HOH A 78 486 486 HOH HOH . D 4 HOH A 79 487 487 HOH HOH . D 4 HOH A 80 488 488 HOH HOH . D 4 HOH A 81 489 489 HOH HOH . D 4 HOH A 82 490 490 HOH HOH . D 4 HOH A 83 491 491 HOH HOH . D 4 HOH A 84 492 492 HOH HOH . D 4 HOH A 85 493 493 HOH HOH . D 4 HOH A 86 494 494 HOH HOH . D 4 HOH A 87 495 495 HOH HOH . D 4 HOH A 88 496 496 HOH HOH . D 4 HOH A 89 497 497 HOH HOH . D 4 HOH A 90 498 498 HOH HOH . D 4 HOH A 91 499 499 HOH HOH . D 4 HOH A 92 500 500 HOH HOH . D 4 HOH A 93 501 501 HOH HOH . D 4 HOH A 94 502 502 HOH HOH . D 4 HOH A 95 503 503 HOH HOH . D 4 HOH A 96 504 504 HOH HOH . D 4 HOH A 97 506 506 HOH HOH . D 4 HOH A 98 507 507 HOH HOH . D 4 HOH A 99 509 509 HOH HOH . D 4 HOH A 100 511 511 HOH HOH . D 4 HOH A 101 512 512 HOH HOH . D 4 HOH A 102 513 513 HOH HOH . D 4 HOH A 103 514 514 HOH HOH . D 4 HOH A 104 515 515 HOH HOH . D 4 HOH A 105 516 516 HOH HOH . D 4 HOH A 106 519 519 HOH HOH . D 4 HOH A 107 520 520 HOH HOH . D 4 HOH A 108 521 521 HOH HOH . D 4 HOH A 109 524 524 HOH HOH . D 4 HOH A 110 525 525 HOH HOH . D 4 HOH A 111 528 528 HOH HOH . D 4 HOH A 112 529 529 HOH HOH . D 4 HOH A 113 530 530 HOH HOH . D 4 HOH A 114 531 531 HOH HOH . D 4 HOH A 115 534 534 HOH HOH . D 4 HOH A 116 535 535 HOH HOH . D 4 HOH A 117 536 536 HOH HOH . D 4 HOH A 118 539 539 HOH HOH . D 4 HOH A 119 540 540 HOH HOH . D 4 HOH A 120 541 541 HOH HOH . D 4 HOH A 121 542 542 HOH HOH . D 4 HOH A 122 543 543 HOH HOH . D 4 HOH A 123 544 544 HOH HOH . D 4 HOH A 124 545 545 HOH HOH . D 4 HOH A 125 546 546 HOH HOH . D 4 HOH A 126 547 547 HOH HOH . D 4 HOH A 127 548 548 HOH HOH . D 4 HOH A 128 549 549 HOH HOH . D 4 HOH A 129 550 550 HOH HOH . D 4 HOH A 130 551 551 HOH HOH . D 4 HOH A 131 552 552 HOH HOH . D 4 HOH A 132 553 553 HOH HOH . D 4 HOH A 133 554 554 HOH HOH . D 4 HOH A 134 555 555 HOH HOH . D 4 HOH A 135 556 556 HOH HOH . D 4 HOH A 136 557 557 HOH HOH . D 4 HOH A 137 559 559 HOH HOH . D 4 HOH A 138 560 560 HOH HOH . D 4 HOH A 139 561 561 HOH HOH . D 4 HOH A 140 562 562 HOH HOH . D 4 HOH A 141 563 563 HOH HOH . D 4 HOH A 142 564 564 HOH HOH . D 4 HOH A 143 565 565 HOH HOH . D 4 HOH A 144 566 566 HOH HOH . D 4 HOH A 145 567 567 HOH HOH . D 4 HOH A 146 568 568 HOH HOH . D 4 HOH A 147 569 569 HOH HOH . D 4 HOH A 148 571 571 HOH HOH . D 4 HOH A 149 573 573 HOH HOH . D 4 HOH A 150 574 574 HOH HOH . D 4 HOH A 151 575 575 HOH HOH . D 4 HOH A 152 578 578 HOH HOH . D 4 HOH A 153 579 579 HOH HOH . D 4 HOH A 154 580 580 HOH HOH . D 4 HOH A 155 581 581 HOH HOH . D 4 HOH A 156 583 583 HOH HOH . D 4 HOH A 157 587 587 HOH HOH . D 4 HOH A 158 588 588 HOH HOH . D 4 HOH A 159 589 589 HOH HOH . D 4 HOH A 160 590 590 HOH HOH . D 4 HOH A 161 591 591 HOH HOH . D 4 HOH A 162 594 594 HOH HOH . D 4 HOH A 163 596 596 HOH HOH . D 4 HOH A 164 598 598 HOH HOH . D 4 HOH A 165 599 599 HOH HOH . D 4 HOH A 166 602 602 HOH HOH . D 4 HOH A 167 603 603 HOH HOH . D 4 HOH A 168 604 604 HOH HOH . D 4 HOH A 169 609 609 HOH HOH . D 4 HOH A 170 614 614 HOH HOH . D 4 HOH A 171 615 615 HOH HOH . D 4 HOH A 172 616 616 HOH HOH . D 4 HOH A 173 618 618 HOH HOH . D 4 HOH A 174 619 619 HOH HOH . D 4 HOH A 175 620 620 HOH HOH . D 4 HOH A 176 621 621 HOH HOH . D 4 HOH A 177 628 628 HOH HOH . D 4 HOH A 178 631 631 HOH HOH . D 4 HOH A 179 632 632 HOH HOH . D 4 HOH A 180 634 634 HOH HOH . D 4 HOH A 181 635 635 HOH HOH . D 4 HOH A 182 637 637 HOH HOH . D 4 HOH A 183 638 638 HOH HOH . D 4 HOH A 184 641 641 HOH HOH . D 4 HOH A 185 649 649 HOH HOH . D 4 HOH A 186 661 661 HOH HOH . D 4 HOH A 187 665 665 HOH HOH . D 4 HOH A 188 667 667 HOH HOH . D 4 HOH A 189 668 668 HOH HOH . D 4 HOH A 190 672 672 HOH HOH . D 4 HOH A 191 674 674 HOH HOH . D 4 HOH A 192 675 675 HOH HOH . D 4 HOH A 193 677 677 HOH HOH . D 4 HOH A 194 680 680 HOH HOH . D 4 HOH A 195 684 684 HOH HOH . D 4 HOH A 196 685 685 HOH HOH . D 4 HOH A 197 686 686 HOH HOH . D 4 HOH A 198 687 687 HOH HOH . D 4 HOH A 199 688 688 HOH HOH . D 4 HOH A 200 690 690 HOH HOH . D 4 HOH A 201 692 692 HOH HOH . D 4 HOH A 202 694 694 HOH HOH . D 4 HOH A 203 695 695 HOH HOH . D 4 HOH A 204 704 704 HOH HOH . D 4 HOH A 205 705 705 HOH HOH . D 4 HOH A 206 711 711 HOH HOH . D 4 HOH A 207 727 727 HOH HOH . D 4 HOH A 208 731 731 HOH HOH . D 4 HOH A 209 732 732 HOH HOH . D 4 HOH A 210 733 733 HOH HOH . D 4 HOH A 211 735 735 HOH HOH . D 4 HOH A 212 736 736 HOH HOH . D 4 HOH A 213 737 737 HOH HOH . D 4 HOH A 214 739 739 HOH HOH . D 4 HOH A 215 740 740 HOH HOH . D 4 HOH A 216 741 741 HOH HOH . D 4 HOH A 217 742 742 HOH HOH . D 4 HOH A 218 743 743 HOH HOH . D 4 HOH A 219 744 744 HOH HOH . D 4 HOH A 220 745 745 HOH HOH . D 4 HOH A 221 746 746 HOH HOH . D 4 HOH A 222 747 747 HOH HOH . D 4 HOH A 223 749 749 HOH HOH . D 4 HOH A 224 751 751 HOH HOH . D 4 HOH A 225 752 752 HOH HOH . D 4 HOH A 226 753 753 HOH HOH . D 4 HOH A 227 754 754 HOH HOH . D 4 HOH A 228 755 755 HOH HOH . D 4 HOH A 229 756 756 HOH HOH . D 4 HOH A 230 758 758 HOH HOH . D 4 HOH A 231 760 760 HOH HOH . D 4 HOH A 232 761 761 HOH HOH . D 4 HOH A 233 764 764 HOH HOH . D 4 HOH A 234 765 765 HOH HOH . D 4 HOH A 235 766 766 HOH HOH . D 4 HOH A 236 768 768 HOH HOH . D 4 HOH A 237 769 769 HOH HOH . D 4 HOH A 238 771 771 HOH HOH . D 4 HOH A 239 773 773 HOH HOH . D 4 HOH A 240 774 774 HOH HOH . D 4 HOH A 241 775 775 HOH HOH . D 4 HOH A 242 776 776 HOH HOH . D 4 HOH A 243 777 777 HOH HOH . D 4 HOH A 244 779 779 HOH HOH . D 4 HOH A 245 784 784 HOH HOH . D 4 HOH A 246 786 786 HOH HOH . D 4 HOH A 247 787 787 HOH HOH . D 4 HOH A 248 789 789 HOH HOH . D 4 HOH A 249 790 790 HOH HOH . D 4 HOH A 250 794 794 HOH HOH . D 4 HOH A 251 796 796 HOH HOH . D 4 HOH A 252 799 799 HOH HOH . D 4 HOH A 253 802 802 HOH HOH . D 4 HOH A 254 804 804 HOH HOH . D 4 HOH A 255 805 805 HOH HOH . D 4 HOH A 256 808 808 HOH HOH . D 4 HOH A 257 809 809 HOH HOH . D 4 HOH A 258 810 810 HOH HOH . D 4 HOH A 259 811 811 HOH HOH . D 4 HOH A 260 824 824 HOH HOH . D 4 HOH A 261 825 825 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N DCY . . . C 3 10.38 -11.139 23.139 1 17.4 ? N DCY 308 A 1 HETATM 2 C CA DCY . . . C 3 9.835 -9.75 23.203 1 20.31 ? CA DCY 308 A 1 HETATM 3 C C DCY . . . C 3 9.754 -9.262 24.656 1 24.62 ? C DCY 308 A 1 HETATM 4 O O DCY . . . C 3 9.179 -8.183 24.9 1 16.27 ? O DCY 308 A 1 HETATM 5 C CB DCY . . . C 3 10.742 -8.821 22.398 1 16.23 ? CB DCY 308 A 1 HETATM 6 S SG DCY . . . C 3 12.422 -8.587 23.046 1 13.86 ? SG DCY 308 A 1 HETATM 7 O OXT DCY . . . C 3 10.282 -9.969 25.533 1 18.17 ? OXT DCY 308 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 7 #