data_1F5A # _model_server_result.job_id ZoOVxs_dQWVQZEmKfa11ew _model_server_result.datetime_utc '2024-12-21 15:12:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1f5a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 1F5A # _exptl.entry_id 1F5A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1F5A _cell.length_a 57.55 _cell.length_b 62.72 _cell.length_c 179.69 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1F5A _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 250 A ALA 250 1_555 A N MSE 251 A MSE 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 251 A MSE 251 1_555 A N LEU 252 A LEU 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C LEU 312 A LEU 312 1_555 A N MSE 313 A MSE 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale4 A C MSE 313 A MSE 313 1_555 A N PRO 314 A PRO 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 A C ARG 334 A ARG 334 1_555 A N MSE 335 A MSE 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 A C MSE 335 A MSE 335 1_555 A N VAL 336 A VAL 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale7 A C VAL 336 A VAL 336 1_555 A N MSE 337 A MSE 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale8 A C MSE 337 A MSE 337 1_555 A N VAL 338 A VAL 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 A C THR 435 A THR 435 1_555 A N MSE 436 A MSE 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 A C MSE 436 A MSE 436 1_555 A N TRP 437 A TRP 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale11 A C LYS 475 A LYS 475 1_555 A N MSE 476 A MSE 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale12 A C MSE 476 A MSE 476 1_555 A N PHE 477 A PHE 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale13 A C ASP 480 A ASP 480 1_555 A N MSE 481 A MSE 481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale14 A C MSE 481 A MSE 481 1_555 A N LYS 482 A LYS 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale15 A C ALA 485 A ALA 485 1_555 A N MSE 486 A MSE 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale16 A C MSE 486 A MSE 486 1_555 A N HIS 487 A HIS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 A OD2 ASP 113 A ASP 113 1_555 B MN MN . A MN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc2 A OD1 ASP 113 A ASP 113 1_555 C MN MN . A MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc3 A OD1 ASP 115 A ASP 115 1_555 B MN MN . A MN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc4 A OD2 ASP 115 A ASP 115 1_555 C MN MN . A MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc5 A OD2 ASP 167 A ASP 167 1_555 B MN MN . A MN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc6 E N7 3AT . A 3AT 1000 1_555 B MN MN . A MN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc7 E O2A 3AT . A 3AT 1000 1_555 C MN MN . A MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc8 E O1G 3AT . A 3AT 1000 1_555 D MN MN . A MN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc9 E O2A 3AT . A 3AT 1000 1_555 D MN MN . A MN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc10 E O1B 3AT . A 3AT 1000 1_555 D MN MN . A MN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc11 B MN MN . A MN 1001 1_555 G O HOH . A HOH 2155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc12 B MN MN . A MN 1001 1_555 F O5' 3PO . A 3PO 4000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc13 C MN MN . A MN 1002 1_555 G O HOH . A HOH 2104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc14 D MN MN . A MN 1003 1_555 F O2A 3PO . A 3PO 4000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc15 D MN MN . A MN 1003 1_555 F O2B 3PO . A 3PO 4000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1F5A _atom_sites.fract_transf_matrix[1][1] 0.017376 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015944 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005565 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 1001 1001 MN MN . C 2 MN A 1 1002 1002 MN MN . D 2 MN A 1 1003 1003 MN MN . E 3 3AT A 1 1000 1000 3AT 3AT . F 4 3PO A 1 4000 4000 3PO 3PO . G 5 HOH A 1 2001 2001 HOH TIP . G 5 HOH A 2 2002 2002 HOH TIP . G 5 HOH A 3 2003 2003 HOH TIP . G 5 HOH A 4 2004 2004 HOH TIP . G 5 HOH A 5 2005 2005 HOH TIP . G 5 HOH A 6 2006 2006 HOH TIP . G 5 HOH A 7 2007 2007 HOH TIP . G 5 HOH A 8 2008 2008 HOH TIP . G 5 HOH A 9 2009 2009 HOH TIP . G 5 HOH A 10 2010 2010 HOH TIP . G 5 HOH A 11 2011 2011 HOH TIP . G 5 HOH A 12 2012 2012 HOH TIP . G 5 HOH A 13 2013 2013 HOH TIP . G 5 HOH A 14 2014 2014 HOH TIP . G 5 HOH A 15 2015 2015 HOH TIP . G 5 HOH A 16 2016 2016 HOH TIP . G 5 HOH A 17 2017 2017 HOH TIP . G 5 HOH A 18 2018 2018 HOH TIP . G 5 HOH A 19 2020 2020 HOH TIP . G 5 HOH A 20 2021 2021 HOH TIP . G 5 HOH A 21 2022 2022 HOH TIP . G 5 HOH A 22 2023 2023 HOH TIP . G 5 HOH A 23 2024 2024 HOH TIP . G 5 HOH A 24 2025 2025 HOH TIP . G 5 HOH A 25 2026 2026 HOH TIP . G 5 HOH A 26 2027 2027 HOH TIP . G 5 HOH A 27 2028 2028 HOH TIP . G 5 HOH A 28 2029 2029 HOH TIP . G 5 HOH A 29 2030 2030 HOH TIP . G 5 HOH A 30 2031 2031 HOH TIP . G 5 HOH A 31 2032 2032 HOH TIP . G 5 HOH A 32 2033 2033 HOH TIP . G 5 HOH A 33 2035 2035 HOH TIP . G 5 HOH A 34 2036 2036 HOH TIP . G 5 HOH A 35 2037 2037 HOH TIP . G 5 HOH A 36 2038 2038 HOH TIP . G 5 HOH A 37 2039 2039 HOH TIP . G 5 HOH A 38 2040 2040 HOH TIP . G 5 HOH A 39 2041 2041 HOH TIP . G 5 HOH A 40 2042 2042 HOH TIP . G 5 HOH A 41 2043 2043 HOH TIP . G 5 HOH A 42 2044 2044 HOH TIP . G 5 HOH A 43 2045 2045 HOH TIP . G 5 HOH A 44 2046 2046 HOH TIP . G 5 HOH A 45 2047 2047 HOH TIP . G 5 HOH A 46 2048 2048 HOH TIP . G 5 HOH A 47 2049 2049 HOH TIP . G 5 HOH A 48 2050 2050 HOH TIP . G 5 HOH A 49 2051 2051 HOH TIP . G 5 HOH A 50 2052 2052 HOH TIP . G 5 HOH A 51 2053 2053 HOH TIP . G 5 HOH A 52 2054 2054 HOH TIP . G 5 HOH A 53 2055 2055 HOH TIP . G 5 HOH A 54 2056 2056 HOH TIP . G 5 HOH A 55 2057 2057 HOH TIP . G 5 HOH A 56 2058 2058 HOH TIP . G 5 HOH A 57 2059 2059 HOH TIP . G 5 HOH A 58 2060 2060 HOH TIP . G 5 HOH A 59 2061 2061 HOH TIP . G 5 HOH A 60 2062 2062 HOH TIP . G 5 HOH A 61 2063 2063 HOH TIP . G 5 HOH A 62 2064 2064 HOH TIP . G 5 HOH A 63 2065 2065 HOH TIP . G 5 HOH A 64 2066 2066 HOH TIP . G 5 HOH A 65 2067 2067 HOH TIP . G 5 HOH A 66 2068 2068 HOH TIP . G 5 HOH A 67 2069 2069 HOH TIP . G 5 HOH A 68 2070 2070 HOH TIP . G 5 HOH A 69 2071 2071 HOH TIP . G 5 HOH A 70 2072 2072 HOH TIP . G 5 HOH A 71 2073 2073 HOH TIP . G 5 HOH A 72 2074 2074 HOH TIP . G 5 HOH A 73 2075 2075 HOH TIP . G 5 HOH A 74 2076 2076 HOH TIP . G 5 HOH A 75 2077 2077 HOH TIP . G 5 HOH A 76 2078 2078 HOH TIP . G 5 HOH A 77 2079 2079 HOH TIP . G 5 HOH A 78 2080 2080 HOH TIP . G 5 HOH A 79 2081 2081 HOH TIP . G 5 HOH A 80 2082 2082 HOH TIP . G 5 HOH A 81 2083 2083 HOH TIP . G 5 HOH A 82 2085 2085 HOH TIP . G 5 HOH A 83 2086 2086 HOH TIP . G 5 HOH A 84 2087 2087 HOH TIP . G 5 HOH A 85 2088 2088 HOH TIP . G 5 HOH A 86 2091 2091 HOH TIP . G 5 HOH A 87 2093 2093 HOH TIP . G 5 HOH A 88 2094 2094 HOH TIP . G 5 HOH A 89 2095 2095 HOH TIP . G 5 HOH A 90 2096 2096 HOH TIP . G 5 HOH A 91 2097 2097 HOH TIP . G 5 HOH A 92 2098 2098 HOH TIP . G 5 HOH A 93 2099 2099 HOH TIP . G 5 HOH A 94 2100 2100 HOH TIP . G 5 HOH A 95 2101 2101 HOH TIP . G 5 HOH A 96 2102 2102 HOH TIP . G 5 HOH A 97 2103 2103 HOH TIP . G 5 HOH A 98 2104 2104 HOH TIP . G 5 HOH A 99 2105 2105 HOH TIP . G 5 HOH A 100 2106 2106 HOH TIP . G 5 HOH A 101 2107 2107 HOH TIP . G 5 HOH A 102 2109 2109 HOH TIP . G 5 HOH A 103 2110 2110 HOH TIP . G 5 HOH A 104 2111 2111 HOH TIP . G 5 HOH A 105 2112 2112 HOH TIP . G 5 HOH A 106 2113 2113 HOH TIP . G 5 HOH A 107 2114 2114 HOH TIP . G 5 HOH A 108 2115 2115 HOH TIP . G 5 HOH A 109 2116 2116 HOH TIP . G 5 HOH A 110 2117 2117 HOH TIP . G 5 HOH A 111 2118 2118 HOH TIP . G 5 HOH A 112 2119 2119 HOH TIP . G 5 HOH A 113 2120 2120 HOH TIP . G 5 HOH A 114 2121 2121 HOH TIP . G 5 HOH A 115 2122 2122 HOH TIP . G 5 HOH A 116 2123 2123 HOH TIP . G 5 HOH A 117 2124 2124 HOH TIP . G 5 HOH A 118 2125 2125 HOH TIP . G 5 HOH A 119 2126 2126 HOH TIP . G 5 HOH A 120 2127 2127 HOH TIP . G 5 HOH A 121 2128 2128 HOH TIP . G 5 HOH A 122 2129 2129 HOH TIP . G 5 HOH A 123 2130 2130 HOH TIP . G 5 HOH A 124 2131 2131 HOH TIP . G 5 HOH A 125 2132 2132 HOH TIP . G 5 HOH A 126 2133 2133 HOH TIP . G 5 HOH A 127 2134 2134 HOH TIP . G 5 HOH A 128 2135 2135 HOH TIP . G 5 HOH A 129 2136 2136 HOH TIP . G 5 HOH A 130 2137 2137 HOH TIP . G 5 HOH A 131 2138 2138 HOH TIP . G 5 HOH A 132 2139 2139 HOH TIP . G 5 HOH A 133 2140 2140 HOH TIP . G 5 HOH A 134 2141 2141 HOH TIP . G 5 HOH A 135 2142 2142 HOH TIP . G 5 HOH A 136 2143 2143 HOH TIP . G 5 HOH A 137 2144 2144 HOH TIP . G 5 HOH A 138 2145 2145 HOH TIP . G 5 HOH A 139 2146 2146 HOH TIP . G 5 HOH A 140 2147 2147 HOH TIP . G 5 HOH A 141 2148 2148 HOH TIP . G 5 HOH A 142 2149 2149 HOH TIP . G 5 HOH A 143 2150 2150 HOH TIP . G 5 HOH A 144 2151 2151 HOH TIP . G 5 HOH A 145 2152 2152 HOH TIP . G 5 HOH A 146 2153 2153 HOH TIP . G 5 HOH A 147 2154 2154 HOH TIP . G 5 HOH A 148 2155 2155 HOH TIP . G 5 HOH A 149 2156 2156 HOH TIP . G 5 HOH A 150 2157 2157 HOH TIP . G 5 HOH A 151 2158 2158 HOH TIP . G 5 HOH A 152 2159 2159 HOH TIP . G 5 HOH A 153 2160 2160 HOH TIP . G 5 HOH A 154 2161 2161 HOH TIP . G 5 HOH A 155 2162 2162 HOH TIP . G 5 HOH A 156 2163 2163 HOH TIP . G 5 HOH A 157 2164 2164 HOH TIP . G 5 HOH A 158 2165 2165 HOH TIP . G 5 HOH A 159 2166 2166 HOH TIP . G 5 HOH A 160 2167 2167 HOH TIP . G 5 HOH A 161 2168 2168 HOH TIP . G 5 HOH A 162 2169 2169 HOH TIP . G 5 HOH A 163 2170 2170 HOH TIP . G 5 HOH A 164 2171 2171 HOH TIP . G 5 HOH A 165 2172 2172 HOH TIP . G 5 HOH A 166 2173 2173 HOH TIP . G 5 HOH A 167 2174 2174 HOH TIP . G 5 HOH A 168 2175 2175 HOH TIP . G 5 HOH A 169 2176 2176 HOH TIP . G 5 HOH A 170 2177 2177 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 39.05 _atom_site.Cartn_y 42.64 _atom_site.Cartn_z -21.901 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 45.36 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 1001 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #