data_1F5O # _model_server_result.job_id n1Nhw6wa7lWyxg7At396yA _model_server_result.datetime_utc '2024-11-22 20:33:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1f5o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":150}' # _entry.id 1F5O # _exptl.entry_id 1F5O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1F5O _cell.length_a 82.5 _cell.length_b 96.2 _cell.length_c 146.1 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1F5O _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,M,N 1 1 C,D,I,J,O,P 2 1 E,F,K,L,Q,R 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 105 A HIS 105 1_555 G FE HEM . A HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc2 B NE2 HIS 105 B HIS 105 1_555 H FE HEM . B HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc3 C NE2 HIS 105 C HIS 105 1_555 I FE HEM . C HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc4 D NE2 HIS 105 D HIS 105 1_555 J FE HEM . D HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc5 E NE2 HIS 105 E HIS 105 1_555 K FE HEM . E HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc6 F NE2 HIS 105 F HIS 105 1_555 L FE HEM . F HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 1F5O _atom_sites.fract_transf_matrix[1][1] 0.012121 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010395 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006845 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 HEM A 1 150 150 HEM HEM . H 2 HEM B 1 150 150 HEM HEM . I 2 HEM C 1 150 150 HEM HEM . J 2 HEM D 1 150 150 HEM HEM . K 2 HEM E 1 150 150 HEM HEM . L 2 HEM F 1 150 150 HEM HEM . M 3 HOH A 1 151 151 HOH TIP . M 3 HOH A 2 152 152 HOH TIP . N 3 HOH B 1 153 153 HOH TIP . N 3 HOH B 2 154 154 HOH TIP . O 3 HOH C 1 155 155 HOH TIP . O 3 HOH C 2 156 156 HOH TIP . P 3 HOH D 1 157 157 HOH TIP . P 3 HOH D 2 158 158 HOH TIP . Q 3 HOH E 1 159 159 HOH TIP . Q 3 HOH E 2 160 160 HOH TIP . R 3 HOH F 1 161 161 HOH TIP . R 3 HOH F 2 162 162 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . H 2 -1.016 45.519 109.206 1 38.03 ? CHA HEM 150 B 1 HETATM 2 C CHB HEM . . . H 2 -0.367 49.955 111.061 1 38.03 ? CHB HEM 150 B 1 HETATM 3 C CHC HEM . . . H 2 -0.209 48.045 115.497 1 38.03 ? CHC HEM 150 B 1 HETATM 4 C CHD HEM . . . H 2 -0.818 43.632 113.631 1 38.03 ? CHD HEM 150 B 1 HETATM 5 C C1A HEM . . . H 2 -0.947 46.895 109.36 1 38.03 ? C1A HEM 150 B 1 HETATM 6 C C2A HEM . . . H 2 -0.831 47.858 108.263 1 38.03 ? C2A HEM 150 B 1 HETATM 7 C C3A HEM . . . H 2 -0.674 49.11 108.779 1 38.03 ? C3A HEM 150 B 1 HETATM 8 C C4A HEM . . . H 2 -0.659 48.912 110.199 1 38.03 ? C4A HEM 150 B 1 HETATM 9 C CMA HEM . . . H 2 -0.586 50.422 108.022 1 38.03 ? CMA HEM 150 B 1 HETATM 10 C CAA HEM . . . H 2 -0.924 47.554 106.78 1 38.03 ? CAA HEM 150 B 1 HETATM 11 C CBA HEM . . . H 2 -2.329 47.076 106.473 1 38.03 ? CBA HEM 150 B 1 HETATM 12 C CGA HEM . . . H 2 -2.509 46.734 105.019 1 38.03 ? CGA HEM 150 B 1 HETATM 13 O O1A HEM . . . H 2 -1.63 46.034 104.47 1 38.03 ? O1A HEM 150 B 1 HETATM 14 O O2A HEM . . . H 2 -3.527 47.156 104.431 1 38.03 ? O2A HEM 150 B 1 HETATM 15 C C1B HEM . . . H 2 -0.286 49.821 112.435 1 38.03 ? C1B HEM 150 B 1 HETATM 16 C C2B HEM . . . H 2 -0.09 50.938 113.342 1 38.03 ? C2B HEM 150 B 1 HETATM 17 C C3B HEM . . . H 2 -0.027 50.399 114.603 1 38.03 ? C3B HEM 150 B 1 HETATM 18 C C4B HEM . . . H 2 -0.261 48.962 114.453 1 38.03 ? C4B HEM 150 B 1 HETATM 19 C CMB HEM . . . H 2 -0.051 52.402 112.94 1 38.03 ? CMB HEM 150 B 1 HETATM 20 C CAB HEM . . . H 2 0.254 51.011 115.814 1 38.03 ? CAB HEM 150 B 1 HETATM 21 C CBB HEM . . . H 2 0.464 52.406 116.016 1 38.03 ? CBB HEM 150 B 1 HETATM 22 C C1C HEM . . . H 2 -0.324 46.667 115.353 1 38.03 ? C1C HEM 150 B 1 HETATM 23 C C2C HEM . . . H 2 -0.187 45.72 116.458 1 38.03 ? C2C HEM 150 B 1 HETATM 24 C C3C HEM . . . H 2 -0.345 44.469 115.955 1 38.03 ? C3C HEM 150 B 1 HETATM 25 C C4C HEM . . . H 2 -0.591 44.674 114.521 1 38.03 ? C4C HEM 150 B 1 HETATM 26 C CMC HEM . . . H 2 0.127 46.073 117.902 1 38.03 ? CMC HEM 150 B 1 HETATM 27 C CAC HEM . . . H 2 -0.245 43.222 116.578 1 38.03 ? CAC HEM 150 B 1 HETATM 28 C CBC HEM . . . H 2 -0.242 42.885 117.986 1 38.03 ? CBC HEM 150 B 1 HETATM 29 C C1D HEM . . . H 2 -1.013 43.776 112.275 1 38.03 ? C1D HEM 150 B 1 HETATM 30 C C2D HEM . . . H 2 -1.181 42.654 111.391 1 38.03 ? C2D HEM 150 B 1 HETATM 31 C C3D HEM . . . H 2 -1.19 43.163 110.141 1 38.03 ? C3D HEM 150 B 1 HETATM 32 C C4D HEM . . . H 2 -1.046 44.623 110.257 1 38.03 ? C4D HEM 150 B 1 HETATM 33 C CMD HEM . . . H 2 -1.351 41.205 111.783 1 38.03 ? CMD HEM 150 B 1 HETATM 34 C CAD HEM . . . H 2 -1.376 42.338 108.886 1 38.03 ? CAD HEM 150 B 1 HETATM 35 C CBD HEM . . . H 2 -0.026 42.058 108.273 1 38.03 ? CBD HEM 150 B 1 HETATM 36 C CGD HEM . . . H 2 -0.121 41.192 107.036 1 38.03 ? CGD HEM 150 B 1 HETATM 37 O O1D HEM . . . H 2 -0.647 40.063 107.133 1 38.03 ? O1D HEM 150 B 1 HETATM 38 O O2D HEM . . . H 2 0.334 41.637 105.964 1 38.03 ? O2D HEM 150 B 1 HETATM 39 N NA HEM . . . H 2 -0.875 47.562 110.56 1 38.03 ? NA HEM 150 B 1 HETATM 40 N NB HEM . . . H 2 -0.452 48.6 113.12 1 38.03 ? NB HEM 150 B 1 HETATM 41 N NC HEM . . . H 2 -0.582 46.021 114.155 1 38.03 ? NC HEM 150 B 1 HETATM 42 N ND HEM . . . H 2 -0.981 44.986 111.592 1 38.03 ? ND HEM 150 B 1 HETATM 43 FE FE HEM . . . H 2 -1.003 46.79 112.372 1 38.03 ? FE HEM 150 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #